Rroxscaffold_2G00137810

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000214
Physical Location & Seq
Reverse (-)
75810801 .. 75816122
5322 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00137810.1

Sequence Viewer

Length: 561 bp
ATGAAAGTAAACTTAGAAGCATGGTTTTTATCATTGCAGGCTCTTCTTCGCGAAGGATCAAGGCCACCACCAATTGATAATGTTAGTAATCTGTATATCTGGGTTACTGTGAAGCTCCCCGATGGGTCTGATGAAATTGAGTTAGCAAGGTATATGCTTGAGCATGCTCGATATTTGAAAAAAAATGATTTATTTCCTCGCTTCCATCGCAGTGATATTCTAAAGGATCCTCCGGTCAATTCCCTTTTGGGGAATTGGCTTTGCCGCAACGTAAGGTATGGAGTTCCACCCTACTCCGAGTGTTTTATTTACTTGTACTTGTTGGAAGAGATGCCGGACCCAAAAATAGTTCTTGCTAGGCGATTCCCTCATCCCATTGATGATGGCTTTTTGCCCGCAGACGGGATCATAGAGAAAGAGCCCTCTCGGCCTTTCGTCACGCCATCTCCTCGCTTGGATATTCATCTTGCCACCGACAGCGCAAGCTACGAGCTCTATGCCCTTAACCACTTTGCTAGCCAATTTGGGTTGGCCCGCTTGGTACCCCGGCCTCTCGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

21.42

Weight (kDa)

6.2

Isoelectric Point (pI)

52.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 541
AccB1I GGYRCC 1 cut(s) 541
AccII CGCG 1 cut(s) 51
AciI CCGC 3 cut(s) 265, 396, 535
AclWI GGATC 4 cut(s) 64, 221, 234, 413
AfaI GTAC 2 cut(s) 317, 543
AfiI CCNNNNNNNGG 3 cut(s) 249, 401, 402
AgsI TTSAA 1 cut(s) 178
AluBI AGCT 3 cut(s) 115, 486, 493
AluI AGCT 3 cut(s) 115, 486, 493
Alw21I GWGCWC 1 cut(s) 495
AlwI GGATC 4 cut(s) 64, 221, 234, 413
AoxI GGCC 4 cut(s) 62, 428, 531, 548
Asp718I GGTACC 1 cut(s) 541
AspLEI GCGC 1 cut(s) 482
AspS9I GGNCC 2 cut(s) 337, 532
AsuC2I CCSGG 1 cut(s) 547
AsuNHI GCTAGC 1 cut(s) 515
AvaII GGWCC 1 cut(s) 337
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 541
BanII GRGCYC 2 cut(s) 423, 495
Bbv12I GWGCWC 1 cut(s) 495
BccI CCATC 4 cut(s) 116, 213, 377, 451
BcgI CGANNNNNNTGC 2 cut(s) 479, 513
BcnI CCSGG 1 cut(s) 547
BfaI CTAG 2 cut(s) 357, 516
BglI GCCNNNNNGGC 1 cut(s) 427
BisI GCNGC 1 cut(s) 265
BlsI GCNGC 1 cut(s) 266
Bme1390I CCNGG 1 cut(s) 547
Bme18I GGWCC 1 cut(s) 337
BmgT120I GGNCC 2 cut(s) 337, 532
BmiI GGNNCC 3 cut(s) 228, 339, 543
BmrFI CCNGG 1 cut(s) 547
BmsI GCATC 1 cut(s) 321
BmtI GCTAGC 1 cut(s) 519
BpuEI CTTGAG 1 cut(s) 179
BpuMI CCSGG 1 cut(s) 547
BsaBI GATNNNNATC 1 cut(s) 462
BsaJI CCNNGG 1 cut(s) 545
BsaWI WCCGGW 1 cut(s) 232
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bsc4I CCNNNNNNNGG 3 cut(s) 249, 401, 402
Bse3DI GCAATG 1 cut(s) 32
Bse8I GATNNNNATC 1 cut(s) 462
BseDI CCNNGG 1 cut(s) 545
BseGI GGATG 1 cut(s) 370
BseJI GATNNNNATC 1 cut(s) 462
BseLI CCNNNNNNNGG 3 cut(s) 249, 401, 402
BseMI GCAATG 1 cut(s) 32
BseRI GAGGAG 1 cut(s) 438
Bsh1236I CGCG 1 cut(s) 51
BshFI GGCC 4 cut(s) 64, 430, 533, 550
BshNI GGYRCC 1 cut(s) 541
BsiHKAI GWGCWC 1 cut(s) 495
BsiSI CCGG 3 cut(s) 233, 335, 547
BslI CCNNNNNNNGG 3 cut(s) 249, 401, 402
BsnI GGCC 4 cut(s) 64, 430, 533, 550
Bsp1286I GDGCHC 2 cut(s) 423, 495
Bsp143I GATC 3 cut(s) 56, 226, 405
Bsp68I TCGCGA 1 cut(s) 51
BspACI CCGC 3 cut(s) 265, 396, 535
BspANI GGCC 4 cut(s) 64, 430, 533, 550
BspFNI CGCG 1 cut(s) 51
BspLI GGNNCC 3 cut(s) 228, 339, 543
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 4 cut(s) 64, 221, 234, 413
BspQI GCTCTTC 1 cut(s) 48
BspT107I GGYRCC 1 cut(s) 541
BsrDI GCAATG 1 cut(s) 32
BssECI CCNNGG 1 cut(s) 545
BssMI GATC 3 cut(s) 56, 226, 405
Bst4CI ACNGT 1 cut(s) 109
Bst6I CTCTTC 2 cut(s) 48, 321
BstC8I GCNNGC 6 cut(s) 39, 165, 396, 484, 517, 535
BstDEI CTNAG 1 cut(s) 13
BstF5I GGATG 1 cut(s) 370
BstFNI CGCG 1 cut(s) 51
BstHHI GCGC 1 cut(s) 482
BstKTI GATC 3 cut(s) 59, 229, 408
BstMBI GATC 3 cut(s) 56, 226, 405
BstMWI GCNNNNNNNGC 2 cut(s) 207, 427
BstNSI RCATGY 1 cut(s) 167
BstSCI CCNGG 1 cut(s) 545
BstUI CGCG 1 cut(s) 51
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 4 cut(s) 64, 430, 533, 550
BtgZI GCGATG 1 cut(s) 191
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 217
BtuMI TCGCGA 1 cut(s) 51
Cac8I GCNNGC 6 cut(s) 39, 165, 396, 484, 517, 535
CfoI GCGC 1 cut(s) 482
Cfr13I GGNCC 2 cut(s) 337, 532
Csp6I GTAC 2 cut(s) 316, 542
CviAII CATG 2 cut(s) 21, 164
CviQI GTAC 2 cut(s) 316, 542
DdeI CTNAG 1 cut(s) 13
DpnI GATC 3 cut(s) 58, 228, 407
DpnII GATC 3 cut(s) 56, 226, 405
Eam1104I CTCTTC 2 cut(s) 48, 321
EarI CTCTTC 2 cut(s) 48, 321
Ecl136II GAGCTC 1 cut(s) 493
Eco24I GRGCYC 2 cut(s) 423, 495
Eco47I GGWCC 1 cut(s) 337
Eco53kI GAGCTC 1 cut(s) 493
EcoICRI GAGCTC 1 cut(s) 493
EcoT38I GRGCYC 2 cut(s) 423, 495
FaeI CATG 2 cut(s) 24, 167
FaiI YATR 8 cut(s) 22, 96, 153, 155, 165, 279, 410, 498
FatI CATG 2 cut(s) 20, 163
FauI CCCGC 2 cut(s) 403, 542
Fnu4HI GCNGC 1 cut(s) 265
FokI GGATG 1 cut(s) 357
FriOI GRGCYC 2 cut(s) 423, 495
Fsp4HI GCNGC 1 cut(s) 265
FspBI CTAG 2 cut(s) 357, 516
GlaI GCGC 1 cut(s) 481
GluI GCNGC 1 cut(s) 265
HaeIII GGCC 4 cut(s) 64, 430, 533, 550
HapII CCGG 3 cut(s) 233, 335, 547
HhaI GCGC 1 cut(s) 482
Hin1II CATG 2 cut(s) 24, 167
Hin6I GCGC 1 cut(s) 480
HinP1I GCGC 1 cut(s) 480
HinfI GANTC 1 cut(s) 363
HpaII CCGG 3 cut(s) 233, 335, 547
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 130, 298
Hpy188III TCNNGA 1 cut(s) 50
Hpy8I GTNNAC 1 cut(s) 10
HpyAV CCTTC 1 cut(s) 47
HpyCH4III ACNGT 1 cut(s) 109
HpyCH4IV ACGT 1 cut(s) 270
HpyCH4V TGCA 1 cut(s) 37
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 427
HpyF3I CTNAG 1 cut(s) 13
HpySE526I ACGT 1 cut(s) 270
Hsp92II CATG 2 cut(s) 24, 167
HspAI GCGC 1 cut(s) 480
KpnI GGTACC 1 cut(s) 545
Kzo9I GATC 3 cut(s) 56, 226, 405
LguI GCTCTTC 1 cut(s) 48
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 4 cut(s) 23, 85, 246, 348
LweI GCATC 1 cut(s) 321
MaeI CTAG 2 cut(s) 357, 516
MaeII ACGT 1 cut(s) 270
MaeIII GTNAC 2 cut(s) 103, 436
MalI GATC 3 cut(s) 58, 228, 407
MboI GATC 3 cut(s) 56, 226, 405
MboII GAAGA 3 cut(s) 35, 38, 338
MfeI CAATTG 1 cut(s) 72
MflI RGATCY 1 cut(s) 226
MhlI GDGCHC 2 cut(s) 423, 495
MluCI AATT 5 cut(s) 72, 135, 238, 253, 521
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 6 cut(s) 207, 240, 378, 433, 459, 561
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 210
MspI CCGG 3 cut(s) 233, 335, 547
MspR9I CCNGG 1 cut(s) 547
MunI CAATTG 1 cut(s) 72
MvnI CGCG 1 cut(s) 51
MwoI GCNNNNNNNGC 2 cut(s) 207, 427
NciI CCSGG 1 cut(s) 547
NdeII GATC 3 cut(s) 56, 226, 405
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 2 cut(s) 24, 167
NlaIV GGNNCC 3 cut(s) 228, 339, 543
NmeAIII GCCGAG 1 cut(s) 406
NmuCI GTSAC 1 cut(s) 436
NruI TCGCGA 1 cut(s) 51
NspI RCATGY 1 cut(s) 167
PaeI GCATGC 1 cut(s) 167
PciSI GCTCTTC 1 cut(s) 48
PfeI GAWTC 1 cut(s) 363
PkrI GCNGC 1 cut(s) 266
Psp124BI GAGCTC 1 cut(s) 495
PspN4I GGNNCC 3 cut(s) 228, 339, 543
PspPI GGNCC 2 cut(s) 337, 532
PsuI RGATCY 1 cut(s) 226
RruI TCGCGA 1 cut(s) 51
RsaI GTAC 2 cut(s) 317, 543
RsaNI GTAC 2 cut(s) 316, 542
RseI CAYNNNNRTG 1 cut(s) 210
SacI GAGCTC 1 cut(s) 495
SapI GCTCTTC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 1 cut(s) 265
Sau3AI GATC 3 cut(s) 56, 226, 405
Sau96I GGNCC 2 cut(s) 337, 532
ScrFI CCNGG 1 cut(s) 547
SduI GDGCHC 2 cut(s) 423, 495
SetI ASST 6 cut(s) 117, 152, 273, 278, 488, 495
SfaNI GCATC 1 cut(s) 321
SinI GGWCC 1 cut(s) 337
SmiMI CAYNNNNRTG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
SphI GCATGC 1 cut(s) 167
Sse9I AATT 5 cut(s) 72, 135, 238, 253, 521
SsiI CCGC 3 cut(s) 265, 396, 535
SspMI CTAG 2 cut(s) 357, 516
SstI GAGCTC 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 545
TaaI ACNGT 1 cut(s) 109
TaiI ACGT 1 cut(s) 273
TaqI TCGA 1 cut(s) 169
TasI AATT 5 cut(s) 72, 135, 238, 253, 521
TatI WGTACW 1 cut(s) 315
TauI GCSGC 1 cut(s) 267
TfiI GAWTC 1 cut(s) 363
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 1 cut(s) 436
Tsp45I GTSAC 1 cut(s) 436
TspDTI ATGAA 3 cut(s) 17, 147, 452
TspRI CASTG 1 cut(s) 217
VpaK11BI GGWCC 1 cut(s) 337
XceI RCATGY 1 cut(s) 167
XspI CTAG 2 cut(s) 357, 516
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.