Rmu_sc0003859.1_g000029

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003859.1
OG0000214
Physical Location & Seq
Forward (+)
98325 .. 103257
4933 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003859.1_g000029.1.cds

Sequence Viewer

Length: 2673 bp
atggcatccaagaaaccattcgttatcgatcaggcagatgaaatcactgtgaaagccgcattcaactggcagactaacatgagtattcgatgtagacgtcaaaccggagaggagagaagccgactgatgggctttggtggcggtgatagtcaagccagtctgggtcccacacttcgcgatcgtttgccagatgatgttatggcctattatgggcttcccatccgccgtcccatagcggctcttcgtcaggtgcctggtgattttagcagttggggaccaagaaggaaagtgggcttctggcctactgtcactcccgaggaaaaggtttggtatcaggaggtccgagagagagatttggcccgatgggacgcggtgggtatcacccaaaccatcgatctatgcttctgtcttccccataatactagctctgcacctctagccgccgttctttgcttctggaacacctccagcaatacattagatttccggtttgggcagatgagcataactctgctggatattcttaccatcacggggttgcccattgactttgacccctatgtgcatggtcaatttgatggcattcaattttctttgagaatggatatggctggtcgagggcatgccgccgttctttgcttctggaacacctccagcaatacattagatttccggtttgggcagatgagcataactctgctggatattcttaccatcacggggttgcccattgactttgacccctatgtgcatggtcaatttgatggcattcaattttctttgagaatggatatggctggtcgatggcatcacagcaaatcctacccattctggcgcgactattactgcacccagcgagaccatacaggaggtatcgcattgctggaattctggctttgtaaatttatcttttgtacttcttccaacaaacctactgggccctggaattctctggccactgctctctacaatggtatttgcgttggccttgggcaacatgtattgggtgtgttataccgttccctttatagggccgtaatgcgccccttcgataccgacattagtggccctttctggattcttgccttttggctgcagatttatttccctcgcttccgtcacgatgatattccaaaggaacctctagtcgattcccttttggggaactggctttgccgcaatttggtaccctggcctctggttgattctgccaattattacacctcttggcggagattagccccacctgggtctgccccctttcagagtcagtttactttgatagtgattcccccttgggtcagagcgctataccccctcaacgatgtcgatgacgactgtgctgattggtggaaagaagtgtcagtgaactgttgggacctgccacatgacgaactcttcgtcttgatctttcgtggcatgagtagccctggttcagaggaccgcgagattcttgaacgcttctccaaacctgcagaacaacccccgcgacctattctaccttctcactcattgcgtccagggatacaaatccacgagcctagggcaacacaaactacccggagcaggatagcctctgttcaggccgggaaacaaaaggcaatagcagaggagacttctgagggagaatcttcgcatgatgaagatcctgctgaggccaatgctgtctttgcttgcaaacgcgataggtctcaatccgtcgaagagagttttgaagatgatgaacctctgggaatgcgattggttcatcaaaggaccactgatccctctcgcctgagcgaagttggaccctcagccactgcagaagagccatttatctcgctagttcaagcatcaactaaccctgtggcacctctcccatctcccactatagagcatctccaaggtcctaccattctaataacgatctctgatgacgactcctcggaggatgaaagcgtggaaagccactctgaaacttctgccgcttatgaggaactgatgacgacagagattttcgcggcactagcggttcaagaggtgaatgaggcgccgcctcttcctcttggtgaccacgtacccgatatcgacccgacagctcgagagtcgccccagagatggaaaatgatactaacggtggtggtgccccccaagtctcgcaaacaaatgagacaaacgtcgaagctgagggttctgtgcttgaatctgctccacttgcccatggtgagccgcacagtcgccccagagatggaaaatgatactaacggtggtggtgccccccaagtctcgcaaacaaatgagacaaccgtcgaagctgagggctctgtgcttgaatctgctccactttcccatgatgaagaaactgaggaggctgtccacccttttgcattggtggttcgtgatcctgtggcgcttctgccgcctccccctcctaccagattcgagagattgatgagggtgttggaggtaactcctccttctgctgtggatgaggctaaaatggtgcttcgcgaacatcttggtcctcaggtattggagactgacattctcccgcgagtcttagaagccctaaggtatctttgccaggagaaggtattgaccctgcagcaatttagtgctattgatgatctgttgaatgaacttgatatggcccgccgtcaatcggccgcgaacaaccaggctcgggatgcttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

890

Amino Acids

100.08

Weight (kDa)

5.02

Isoelectric Point (pI)

52.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 100
Acc36I ACCTGC 2 cut(s) 1389, 1480
Acc65I GGTACC 1 cut(s) 1186
AccB1I GGYRCC 6 cut(s) 250, 1186, 1849, 2029, 2122, 2252
AccI GTMKAC 1 cut(s) 94
AclWI GGATC 3 cut(s) 1640, 1757, 2375
AcoI YGGCCR 2 cut(s) 954, 2643
AcsI RAATTY 3 cut(s) 887, 902, 946
AcyI GRCGYC 2 cut(s) 97, 2030
AfaI GTAC 3 cut(s) 916, 1188, 2058
AfeI AGCGCT 1 cut(s) 1308
AflIII ACRYGT 1 cut(s) 997
AjnI CCWGG 8 cut(s) 253, 941, 1190, 1246, 1429, 1519, 2562, 2655
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 4 cut(s) 426, 2078, 2164, 2294
AluI AGCT 4 cut(s) 426, 2078, 2164, 2294
Alw26I GTCTC 8 cut(s) 852, 1607, 1695, 2139, 2143, 2269, 2273, 2510
AlwI GGATC 3 cut(s) 1640, 1757, 2375
AlwNI CAGNNNCTG 1 cut(s) 1799
Ama87I CYCGRG 3 cut(s) 314, 2079, 2661
Aor51HI AGCGCT 1 cut(s) 1308
ApaI GGGCCC 1 cut(s) 942
ApeKI GCWGC 2 cut(s) 1093, 2584
ApoI RAATTY 3 cut(s) 887, 902, 946
ArsI GACNNNNNNTTYG 4 cut(s) 1382, 1386, 1414, 1418
Asp700I GAANNNNTTC 1 cut(s) 17
Asp718I GGTACC 1 cut(s) 1186
AspA2I CCTAGG 1 cut(s) 1541
AspLEI GCGC 5 cut(s) 837, 1044, 1309, 2032, 2392
AsuC2I CCSGG 2 cut(s) 1561, 1588
AsuHPI GGTGA 6 cut(s) 155, 269, 373, 2032, 2060, 2215
AvaI CYCGRG 3 cut(s) 314, 2079, 2661
AvaII GGWCC 9 cut(s) 164, 275, 340, 1378, 1441, 1755, 1787, 1886, 2501
AvrII CCTAGG 1 cut(s) 1541
AxyI CCTNAGG 2 cut(s) 2505, 2549
BaeGI GKGCMC 3 cut(s) 942, 2127, 2257
BalI TGGCCA 1 cut(s) 956
BanI GGYRCC 6 cut(s) 250, 1186, 1849, 2029, 2122, 2252
BanII GRGCYC 2 cut(s) 942, 2303
BauI CACGAG 1 cut(s) 1535
BbsI GAAGAC 1 cut(s) 401
BbvCI CCTCAGC 4 cut(s) 1653, 1792, 2165, 2295
BbvI GCAGC 2 cut(s) 1080, 2596
BceAI ACGGC 5 cut(s) 210, 428, 614, 1019, 2619
BciT130I CCWGG 8 cut(s) 255, 943, 1192, 1248, 1431, 1521, 2564, 2657
BciVI GTATCC 1 cut(s) 1518
BcnI CCSGG 2 cut(s) 1561, 1588
BcoDI GTCTC 8 cut(s) 852, 1607, 1695, 2139, 2143, 2269, 2273, 2510
BfaI CTAG 6 cut(s) 423, 437, 1145, 1542, 1823, 2006
BfmI CTRYAG 5 cut(s) 1094, 1473, 1800, 1869, 2582
BfoI RGCGCY 3 cut(s) 1310, 2033, 2393
BfuAI ACCTGC 2 cut(s) 1389, 1480
BfuI GTATCC 1 cut(s) 1518
BlnI CCTAGG 1 cut(s) 1541
Bme18I GGWCC 9 cut(s) 164, 275, 340, 1378, 1441, 1755, 1787, 1886, 2501
BmeT110I CYCGRG 3 cut(s) 314, 2079, 2661
BmrI ACTGGG 1 cut(s) 945
BmsI GCATC 5 cut(s) 14, 817, 1841, 1885, 2656
BmuI ACTGGG 1 cut(s) 945
BoxI GACNNNNGTC 2 cut(s) 2155, 2285
BpiI GAAGAC 1 cut(s) 401
BplI GAGNNNNNCTC 4 cut(s) 493, 525, 679, 711
BpmI CTGGAG 2 cut(s) 451, 637
Bpu10I CCTNAGC 5 cut(s) 1653, 1775, 1792, 2165, 2295
BpuMI CCSGG 2 cut(s) 1561, 1588
Bsa29I ATCGAT 2 cut(s) 27, 393
BsaAI YACGTR 1 cut(s) 2056
BsaBI GATNNNNATC 2 cut(s) 1529, 1644
BsaHI GRCGYC 2 cut(s) 97, 2030
BsaI GGTCTC 2 cut(s) 852, 1695
BsaWI WCCGGW 3 cut(s) 104, 486, 672
BsaXI ACNNNNNCTCC 2 cut(s) 295, 325
Bse1I ACTGG 4 cut(s) 71, 156, 940, 1172
Bse21I CCTNAGG 2 cut(s) 2505, 2549
Bse3DI GCAATG 2 cut(s) 878, 1511
Bse8I GATNNNNATC 2 cut(s) 1529, 1644
BseBI CCWGG 8 cut(s) 255, 943, 1192, 1248, 1431, 1521, 2564, 2657
BseCI ATCGAT 2 cut(s) 27, 393
BseGI GGATG 5 cut(s) 5, 219, 1936, 2473, 2671
BseJI GATNNNNATC 2 cut(s) 1529, 1644
BseMI GCAATG 2 cut(s) 878, 1511
BseMII CTCAG 8 cut(s) 1611, 1644, 1766, 1806, 2156, 2286, 2334, 2519
BseNI ACTGG 4 cut(s) 71, 156, 940, 1172
BseRI GAGGAG 5 cut(s) 125, 1625, 1912, 2360, 2442
BseSI GKGCMC 3 cut(s) 942, 2127, 2257
BseX3I CGGCCG 1 cut(s) 2643
BseXI GCAGC 2 cut(s) 1080, 2596
BseYI CCCAGC 1 cut(s) 852
BsgI GTGCAG 2 cut(s) 414, 832
Bsh1285I CGRYCG 2 cut(s) 181, 2646
BshNI GGYRCC 6 cut(s) 250, 1186, 1849, 2029, 2122, 2252
BshVI ATCGAT 2 cut(s) 27, 393
BsiEI CGRYCG 2 cut(s) 181, 2646
BsiHKCI CYCGRG 3 cut(s) 314, 2079, 2661
BsiSI CCGG 5 cut(s) 105, 487, 673, 1561, 1587
BslFI GGGAC 5 cut(s) 150, 213, 288, 380, 1391
BsmAI GTCTC 8 cut(s) 852, 1607, 1695, 2139, 2143, 2269, 2273, 2510
BsmFI GGGAC 5 cut(s) 150, 213, 288, 380, 1391
BsmI GAATGC 4 cut(s) 59, 582, 768, 1740
Bso31I GGTCTC 2 cut(s) 852, 1695
BsoBI CYCGRG 3 cut(s) 314, 2079, 2661
Bsp120I GGGCCC 1 cut(s) 938
Bsp1286I GDGCHC 4 cut(s) 942, 2127, 2257, 2303
Bsp143I GATC 9 cut(s) 28, 178, 394, 1407, 1645, 1762, 1905, 2380, 2605
Bsp19I CCATGG 1 cut(s) 2199
Bsp68I TCGCGA 2 cut(s) 177, 2490
BspCNI CTCAG 8 cut(s) 1612, 1645, 1767, 1805, 2157, 2287, 2335, 2518
BspDI ATCGAT 2 cut(s) 27, 393
BspMAI CTGCAG 4 cut(s) 1098, 1477, 1804, 2586
BspMI ACCTGC 2 cut(s) 1389, 1480
BspPI GGATC 3 cut(s) 1640, 1757, 2375
BspQI GCTCTTC 2 cut(s) 246, 1800
BspT107I GGYRCC 6 cut(s) 250, 1186, 1849, 2029, 2122, 2252
BspTNI GGTCTC 2 cut(s) 852, 1695
BsrDI GCAATG 2 cut(s) 878, 1511
BsrI ACTGG 4 cut(s) 71, 156, 940, 1172
BssMI GATC 9 cut(s) 28, 178, 394, 1407, 1645, 1762, 1905, 2380, 2605
BssNI GRCGYC 2 cut(s) 97, 2030
BssSI CACGAG 1 cut(s) 1535
BssT1I CCWWGG 5 cut(s) 988, 1295, 1541, 1882, 2199
Bst2BI CACGAG 1 cut(s) 1535
Bst2UI CCWGG 8 cut(s) 255, 943, 1192, 1248, 1431, 1521, 2564, 2657
Bst4CI ACNGT 9 cut(s) 49, 307, 1019, 1340, 1373, 2116, 2215, 2246, 2287
Bst6I CTCTTC 5 cut(s) 246, 1403, 1698, 1800, 2043
BstACI GRCGYC 2 cut(s) 97, 2030
BstBAI YACGTR 1 cut(s) 2056
BstC8I GCNNGC 3 cut(s) 624, 1675, 2632
BstDSI CCRYGG 1 cut(s) 2199
BstEII GGTNACC 1 cut(s) 2048
BstF5I GGATG 5 cut(s) 5, 219, 1936, 2473, 2671
BstH2I RGCGCY 3 cut(s) 1310, 2033, 2393
BstHHI GCGC 5 cut(s) 837, 1044, 1309, 2032, 2392
BstKTI GATC 9 cut(s) 31, 181, 397, 1410, 1648, 1765, 1908, 2383, 2608
BstMAI GTCTC 8 cut(s) 852, 1607, 1695, 2139, 2143, 2269, 2273, 2510
BstMBI GATC 9 cut(s) 28, 178, 394, 1407, 1645, 1762, 1905, 2380, 2605
BstMCI CGRYCG 2 cut(s) 181, 2646
BstMWI GCNNNNNNNGC 9 cut(s) 138, 437, 1425, 1670, 1944, 2006, 2194, 2398, 2666
BstNI CCWGG 8 cut(s) 255, 943, 1192, 1248, 1431, 1521, 2564, 2657
BstNSI RCATGY 2 cut(s) 626, 1001
BstPAI GACNNNNGTC 2 cut(s) 2155, 2285
BstPI GGTNACC 1 cut(s) 2048
BstSFI CTRYAG 5 cut(s) 1094, 1473, 1800, 1869, 2582
BstSLI GKGCMC 3 cut(s) 942, 2127, 2257
BstV1I GCAGC 2 cut(s) 1080, 2596
BstV2I GAAGAC 1 cut(s) 401
BstX2I RGATCY 1 cut(s) 1645
BstYI RGATCY 1 cut(s) 1645
BstZI CGGCCG 1 cut(s) 2643
Bsu15I ATCGAT 2 cut(s) 27, 393
Bsu36I CCTNAGG 2 cut(s) 2505, 2549
BsuI GTATCC 1 cut(s) 1518
BsuTUI ATCGAT 2 cut(s) 27, 393
BtgI CCRYGG 1 cut(s) 2199
BtsCI GGATG 5 cut(s) 5, 219, 1936, 2473, 2671
BtsI GCAGTG 2 cut(s) 957, 1797
BtsIMutI CAGTG 5 cut(s) 45, 957, 1371, 1758, 1797
BtuMI TCGCGA 2 cut(s) 177, 2490
BveI ACCTGC 2 cut(s) 1389, 1480
Cac8I GCNNGC 3 cut(s) 624, 1675, 2632
CaiI CAGNNNCTG 1 cut(s) 1799
CfoI GCGC 5 cut(s) 837, 1044, 1309, 2032, 2392
ClaI ATCGAT 2 cut(s) 27, 393
CseI GACGC 2 cut(s) 377, 1505
Csp6I GTAC 3 cut(s) 915, 1187, 2057
CviQI GTAC 3 cut(s) 915, 1187, 2057
DinI GGCGCC 1 cut(s) 2031
DpnI GATC 9 cut(s) 30, 180, 396, 1409, 1647, 1764, 1907, 2382, 2607
DpnII GATC 9 cut(s) 28, 178, 394, 1407, 1645, 1762, 1905, 2380, 2605
EaeI YGGCCR 2 cut(s) 954, 2643
EagI CGGCCG 1 cut(s) 2643
Eam1104I CTCTTC 5 cut(s) 246, 1403, 1698, 1800, 2043
EarI CTCTTC 5 cut(s) 246, 1403, 1698, 1800, 2043
EciI GGCGGA 2 cut(s) 212, 1246
EclXI CGGCCG 1 cut(s) 2643
Eco130I CCWWGG 5 cut(s) 988, 1295, 1541, 1882, 2199
Eco24I GRGCYC 2 cut(s) 942, 2303
Eco31I GGTCTC 2 cut(s) 852, 1695
Eco32I GATATC 1 cut(s) 2065
Eco47I GGWCC 9 cut(s) 164, 275, 340, 1378, 1441, 1755, 1787, 1886, 2501
Eco47III AGCGCT 1 cut(s) 1308
Eco52I CGGCCG 1 cut(s) 2643
Eco81I CCTNAGG 2 cut(s) 2505, 2549
Eco88I CYCGRG 3 cut(s) 314, 2079, 2661
Eco91I GGTNACC 1 cut(s) 2048
EcoO109I RGGNCCY 4 cut(s) 164, 939, 1378, 1886
EcoO65I GGTNACC 1 cut(s) 2048
EcoRI GAATTC 2 cut(s) 887, 946
EcoRII CCWGG 8 cut(s) 253, 941, 1190, 1246, 1429, 1519, 2562, 2655
EcoRV GATATC 1 cut(s) 2065
EcoT14I CCWWGG 5 cut(s) 988, 1295, 1541, 1882, 2199
EcoT38I GRGCYC 2 cut(s) 942, 2303
EgeI GGCGCC 1 cut(s) 2031
EheI GGCGCC 1 cut(s) 2031
ErhI CCWWGG 5 cut(s) 988, 1295, 1541, 1882, 2199
FaqI GGGAC 5 cut(s) 150, 213, 288, 380, 1391
FauI CCCGC 3 cut(s) 1494, 2538, 2639
FblI GTMKAC 1 cut(s) 94
FokI GGATG 3 cut(s) 206, 1943, 2480
FriOI GRGCYC 2 cut(s) 942, 2303
FspBI CTAG 6 cut(s) 423, 437, 1145, 1542, 1823, 2006
GlaI GCGC 5 cut(s) 836, 1043, 1308, 2031, 2391
GsaI CCCAGC 1 cut(s) 856
GsuI CTGGAG 2 cut(s) 451, 637
HaeII RGCGCY 3 cut(s) 1310, 2033, 2393
HapII CCGG 5 cut(s) 105, 487, 673, 1561, 1587
HgaI GACGC 2 cut(s) 377, 1505
HhaI GCGC 5 cut(s) 837, 1044, 1309, 2032, 2392
Hin1I GRCGYC 2 cut(s) 97, 2030
Hin6I GCGC 5 cut(s) 835, 1042, 1307, 2030, 2390
HinP1I GCGC 5 cut(s) 835, 1042, 1307, 2030, 2390
HpaII CCGG 5 cut(s) 105, 487, 673, 1561, 1587
HphI GGTGA 6 cut(s) 155, 269, 373, 2032, 2060, 2215
Hpy166II GTNNAC 4 cut(s) 95, 1275, 1369, 2356
Hpy188I TCNGA 8 cut(s) 344, 1266, 1304, 1438, 1621, 1912, 1927, 1954
Hpy8I GTNNAC 4 cut(s) 95, 1275, 1369, 2356
Hpy99I CGWCG 3 cut(s) 1703, 2161, 2291
HpyAV CCTTC 5 cut(s) 276, 1057, 1512, 2466, 2563
HpyCH4III ACNGT 9 cut(s) 49, 307, 1019, 1340, 1373, 2116, 2215, 2246, 2287
HpyCH4IV ACGT 3 cut(s) 97, 2055, 2156
HpyF10VI GCNNNNNNNGC 9 cut(s) 138, 437, 1425, 1670, 1944, 2006, 2194, 2398, 2666
HpySE526I ACGT 3 cut(s) 97, 2055, 2156
Hsp92I GRCGYC 2 cut(s) 97, 2030
HspAI GCGC 5 cut(s) 835, 1042, 1307, 2030, 2390
KasI GGCGCC 1 cut(s) 2029
KflI GGGWCCC 1 cut(s) 164
KpnI GGTACC 1 cut(s) 1190
Kzo9I GATC 9 cut(s) 28, 178, 394, 1407, 1645, 1762, 1905, 2380, 2605
LguI GCTCTTC 2 cut(s) 246, 1800
LmnI GCTCC 3 cut(s) 1563, 2193, 2323
Lsp1109I GCAGC 2 cut(s) 1080, 2596
LweI GCATC 5 cut(s) 14, 817, 1841, 1885, 2656
MaeI CTAG 6 cut(s) 423, 437, 1145, 1542, 1823, 2006
MaeII ACGT 3 cut(s) 97, 2055, 2156
MaeIII GTNAC 4 cut(s) 307, 1118, 2048, 2446
MalI GATC 9 cut(s) 30, 180, 396, 1409, 1647, 1764, 1907, 2382, 2607
MboI GATC 9 cut(s) 28, 178, 394, 1407, 1645, 1762, 1905, 2380, 2605
MflI RGATCY 1 cut(s) 1645
MhlI GDGCHC 4 cut(s) 942, 2127, 2257, 2303
MlsI TGGCCA 1 cut(s) 956
MluNI TGGCCA 1 cut(s) 956
Mly113I GGCGCC 1 cut(s) 2030
MlyI GAGTC 4 cut(s) 1276, 1913, 2093, 2544
MmeI TCCRAC 3 cut(s) 948, 1765, 2421
Mox20I TGGCCA 1 cut(s) 956
MroXI GAANNNNTTC 1 cut(s) 17
MscI TGGCCA 1 cut(s) 956
MseI TTAA 1 cut(s) 2671
Msp20I TGGCCA 1 cut(s) 956
MspI CCGG 5 cut(s) 105, 487, 673, 1561, 1587
Mva1269I GAATGC 4 cut(s) 59, 582, 768, 1740
MvaI CCWGG 8 cut(s) 255, 943, 1192, 1248, 1431, 1521, 2564, 2657
MwoI GCNNNNNNNGC 9 cut(s) 138, 437, 1425, 1670, 1944, 2006, 2194, 2398, 2666
NarI GGCGCC 1 cut(s) 2030
NciI CCSGG 2 cut(s) 1561, 1588
NcoI CCATGG 1 cut(s) 2199
NdeII GATC 9 cut(s) 28, 178, 394, 1407, 1645, 1762, 1905, 2380, 2605
NmuCI GTSAC 3 cut(s) 307, 1118, 2048
NruI TCGCGA 2 cut(s) 177, 2490
NspI RCATGY 2 cut(s) 626, 1001
PaeI GCATGC 1 cut(s) 626
PaeR7I CTCGAG 1 cut(s) 2079
PciI ACATGT 1 cut(s) 997
PciSI GCTCTTC 2 cut(s) 246, 1800
PcsI WCGNNNNNNNCGW 2 cut(s) 94, 1398
PctI GAATGC 4 cut(s) 59, 582, 768, 1740
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 9 cut(s) 1078, 1151, 1205, 1288, 1450, 1628, 2182, 2312, 2418
Ple19I CGATCG 1 cut(s) 181
PleI GAGTC 4 cut(s) 1275, 1913, 2092, 2543
PluTI GGCGCC 1 cut(s) 2033
PpsI GAGTC 4 cut(s) 1275, 1913, 2092, 2543
Ppu21I YACGTR 1 cut(s) 2056
PpuMI RGGWCCY 3 cut(s) 164, 1378, 1886
PscI ACATGT 1 cut(s) 997
PshAI GACNNNNGTC 2 cut(s) 2155, 2285
Psp5II RGGWCCY 3 cut(s) 164, 1378, 1886
Psp6I CCWGG 8 cut(s) 253, 941, 1190, 1246, 1429, 1519, 2562, 2655
PspEI GGTNACC 1 cut(s) 2048
PspFI CCCAGC 1 cut(s) 852
PspGI CCWGG 8 cut(s) 253, 941, 1190, 1246, 1429, 1519, 2562, 2655
PspOMI GGGCCC 1 cut(s) 938
PspPPI RGGWCCY 3 cut(s) 164, 1378, 1886
PsrI GAACNNNNNNTAC 2 cut(s) 1417, 1449
PstI CTGCAG 4 cut(s) 1098, 1477, 1804, 2586
PstNI CAGNNNCTG 1 cut(s) 1799
PsuI RGATCY 1 cut(s) 1645
PvuI CGATCG 1 cut(s) 181
RruI TCGCGA 2 cut(s) 177, 2490
RsaI GTAC 3 cut(s) 916, 1188, 2058
RsaNI GTAC 3 cut(s) 915, 1187, 2057
SapI GCTCTTC 2 cut(s) 246, 1800
SaqAI TTAA 1 cut(s) 2671
Sau3AI GATC 9 cut(s) 28, 178, 394, 1407, 1645, 1762, 1905, 2380, 2605
SchI GAGTC 4 cut(s) 1276, 1913, 2093, 2544
SduI GDGCHC 4 cut(s) 942, 2127, 2257, 2303
SfaNI GCATC 5 cut(s) 14, 817, 1841, 1885, 2656
SfcI CTRYAG 5 cut(s) 1094, 1473, 1800, 1869, 2582
SfoI GGCGCC 1 cut(s) 2031
Sfr274I CTCGAG 1 cut(s) 2079
SinI GGWCC 9 cut(s) 164, 275, 340, 1378, 1441, 1755, 1787, 1886, 2501
SlaI CTCGAG 1 cut(s) 2079
SmlI CTYRAG 1 cut(s) 2079
SmoI CTYRAG 1 cut(s) 2079
SphI GCATGC 1 cut(s) 626
SspDI GGCGCC 1 cut(s) 2029
SspMI CTAG 6 cut(s) 423, 437, 1145, 1542, 1823, 2006
StyI CCWWGG 5 cut(s) 988, 1295, 1541, 1882, 2199
TaaI ACNGT 9 cut(s) 49, 307, 1019, 1340, 1373, 2116, 2215, 2246, 2287
TaiI ACGT 3 cut(s) 100, 2058, 2159
TatI WGTACW 1 cut(s) 914
TfiI GAWTC 9 cut(s) 1078, 1151, 1205, 1288, 1450, 1628, 2182, 2312, 2418
Tru1I TTAA 1 cut(s) 2671
Tru9I TTAA 1 cut(s) 2671
TscAI CASTG 5 cut(s) 52, 964, 1371, 1765, 1804
TseFI GTSAC 3 cut(s) 307, 1118, 2048
TseI GCWGC 2 cut(s) 1093, 2584
Tsp45I GTSAC 3 cut(s) 307, 1118, 2048
TspDTI ATGAA 7 cut(s) 54, 1656, 1736, 1737, 1947, 2349, 2631
TspGWI ACGGA 2 cut(s) 1106, 1687
TspRI CASTG 5 cut(s) 52, 964, 1371, 1765, 1804
VpaK11BI GGWCC 9 cut(s) 164, 275, 340, 1378, 1441, 1755, 1787, 1886, 2501
XapI RAATTY 3 cut(s) 887, 902, 946
XceI RCATGY 2 cut(s) 626, 1001
XhoI CTCGAG 1 cut(s) 2079
XmaJI CCTAGG 1 cut(s) 1541
XmiI GTMKAC 1 cut(s) 94
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 6 cut(s) 423, 437, 1145, 1542, 1823, 2006
ZraI GACGTC 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.