Rmu_sc0000276.1_g000075

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000276.1
OG0000214
Physical Location & Seq
Reverse (-)
250756 .. 252047
1292 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000276.1_g000075.1.cds

Sequence Viewer

Length: 549 bp
atggcccaccgacgtcaatcggccgctaacacccaggctcgcaatgctcaagaggcgttgaatagtgtctctcgagaaatggacatctcccgcgatattttaaatgaacgatccatccgcctgcgggaactacaaatccaaaggtcagacttcaaacttcagatcgaggatctccaagcacatttagcctttgttgagaatgcgattattgcagaagaagctcaactcgatgagcctttggctgcttctgaagaaatgggtcgcaatctggcccgtatcagagatcgggccactcaggctgaagctggtgccattgcggcaaaacgccacgtggaggaactttggatgagaagggatggactctttgaaggaatgggttcaagctacagaatggatgttcctgtacttcacgtccagctaatggtggttaccaaggctaaagggggtgcagagactcaagctgatattcggttccttcactctctgcccctccaggagataatggcgcggctcaacctggcgttggattccatagctgcttccaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

182

Amino Acids

20.44

Weight (kDa)

5.77

Isoelectric Point (pI)

55.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 421
AccII CGCG 2 cut(s) 93, 508
AciI CCGC 6 cut(s) 24, 91, 118, 124, 317, 508
AclWI GGATC 2 cut(s) 105, 177
AcoI YGGCCR 1 cut(s) 21
AcuI CTGAAG 3 cut(s) 143, 270, 321
AcvI CACGTG 1 cut(s) 331
AcyI GRCGYC 1 cut(s) 13
AfaI GTAC 1 cut(s) 405
AfiI CCNNNNNNNGG 4 cut(s) 124, 334, 421, 523
AgsI TTSAA 4 cut(s) 61, 154, 368, 381
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 3 cut(s) 33, 492, 516
AloI GAACNNNNNNTCC 4 cut(s) 99, 120, 131, 152
AluBI AGCT 6 cut(s) 221, 305, 384, 418, 461, 536
AluI AGCT 6 cut(s) 221, 305, 384, 418, 461, 536
Alw26I GTCTC 2 cut(s) 73, 446
AlwI GGATC 2 cut(s) 105, 177
Ama87I CYCGRG 1 cut(s) 72
AoxI GGCC 4 cut(s) 3, 21, 270, 288
ApeKI GCWGC 2 cut(s) 242, 536
Asp700I GAANNNNTTC 1 cut(s) 376
AspLEI GCGC 1 cut(s) 508
AspS9I GGNCC 3 cut(s) 4, 271, 288
AvaI CYCGRG 1 cut(s) 72
BanI GGYRCC 1 cut(s) 308
BbrPI CACGTG 1 cut(s) 331
BbvI GCAGC 2 cut(s) 229, 523
BccI CCATC 2 cut(s) 122, 350
BciT130I CCWGG 3 cut(s) 35, 494, 518
BcoDI GTCTC 2 cut(s) 73, 446
BfmI CTRYAG 1 cut(s) 385
BglI GCCNNNNNGGC 2 cut(s) 296, 317
BisI GCNGC 5 cut(s) 24, 243, 318, 509, 537
BlsI GCNGC 5 cut(s) 25, 244, 319, 510, 538
Bme1390I CCNGG 3 cut(s) 35, 494, 518
BmeT110I CYCGRG 1 cut(s) 72
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 3 cut(s) 4, 271, 288
BmiI GGNNCC 2 cut(s) 310, 473
BmrFI CCNGG 3 cut(s) 35, 494, 518
BpmI CTGGAG 1 cut(s) 476
BpuEI CTTGAG 2 cut(s) 33, 441
BsaAI YACGTR 1 cut(s) 331
BsaHI GRCGYC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 33, 432
Bsc4I CCNNNNNNNGG 4 cut(s) 124, 334, 421, 523
Bse3DI GCAATG 2 cut(s) 49, 312
BseBI CCWGG 3 cut(s) 35, 494, 518
BseDI CCNNGG 2 cut(s) 33, 432
BseGI GGATG 4 cut(s) 114, 351, 361, 400
BseLI CCNNNNNNNGG 4 cut(s) 124, 334, 421, 523
BseMI GCAATG 2 cut(s) 49, 312
BseMII CTCAG 1 cut(s) 308
BseX3I CGGCCG 1 cut(s) 21
BseXI GCAGC 2 cut(s) 229, 523
BsgI GTGCAG 1 cut(s) 468
Bsh1236I CGCG 2 cut(s) 93, 508
Bsh1285I CGRYCG 1 cut(s) 24
BshFI GGCC 4 cut(s) 5, 23, 272, 290
BshNI GGYRCC 1 cut(s) 308
BsiEI CGRYCG 1 cut(s) 24
BsiHKCI CYCGRG 1 cut(s) 72
BslI CCNNNNNNNGG 4 cut(s) 124, 334, 421, 523
BsmAI GTCTC 2 cut(s) 73, 446
BsmI GAATGC 1 cut(s) 205
BsnI GGCC 4 cut(s) 5, 23, 272, 290
BsoBI CYCGRG 1 cut(s) 72
Bsp143I GATC 4 cut(s) 110, 162, 169, 283
BspACI CCGC 6 cut(s) 24, 91, 118, 124, 317, 508
BspANI GGCC 4 cut(s) 5, 23, 272, 290
BspCNI CTCAG 1 cut(s) 307
BspFNI CGCG 2 cut(s) 93, 508
BspLI GGNNCC 2 cut(s) 310, 473
BspPI GGATC 2 cut(s) 105, 177
BspT107I GGYRCC 1 cut(s) 308
BsrDI GCAATG 2 cut(s) 49, 312
BssECI CCNNGG 2 cut(s) 33, 432
BssMI GATC 4 cut(s) 110, 162, 169, 283
BssNI GRCGYC 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 432
Bst2UI CCWGG 3 cut(s) 35, 494, 518
BstACI GRCGYC 1 cut(s) 13
BstBAI YACGTR 1 cut(s) 331
BstC8I GCNNGC 2 cut(s) 40, 122
BstDEI CTNAG 1 cut(s) 294
BstEII GGTNACC 1 cut(s) 427
BstF5I GGATG 4 cut(s) 114, 351, 361, 400
BstFNI CGCG 2 cut(s) 93, 508
BstHHI GCGC 1 cut(s) 508
BstKTI GATC 4 cut(s) 113, 165, 172, 286
BstMAI GTCTC 2 cut(s) 73, 446
BstMBI GATC 4 cut(s) 110, 162, 169, 283
BstMCI CGRYCG 1 cut(s) 24
BstMWI GCNNNNNNNGC 7 cut(s) 44, 53, 185, 209, 218, 296, 317
BstNI CCWGG 3 cut(s) 35, 494, 518
BstPI GGTNACC 1 cut(s) 427
BstSCI CCNGG 3 cut(s) 33, 492, 516
BstSFI CTRYAG 1 cut(s) 385
BstUI CGCG 2 cut(s) 93, 508
BstV1I GCAGC 2 cut(s) 229, 523
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BstZI CGGCCG 1 cut(s) 21
BsuRI GGCC 4 cut(s) 5, 23, 272, 290
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 4 cut(s) 114, 351, 361, 400
Cac8I GCNNGC 2 cut(s) 40, 122
CfoI GCGC 1 cut(s) 508
Cfr13I GGNCC 3 cut(s) 4, 271, 288
Csp6I GTAC 1 cut(s) 404
CviQI GTAC 1 cut(s) 404
DdeI CTNAG 1 cut(s) 294
DpnI GATC 4 cut(s) 112, 164, 171, 285
DpnII GATC 4 cut(s) 110, 162, 169, 283
DraI TTTAAA 1 cut(s) 102
EaeI YGGCCR 1 cut(s) 21
EagI CGGCCG 1 cut(s) 21
EciI GGCGGA 1 cut(s) 107
EclXI CGGCCG 1 cut(s) 21
Eco130I CCWWGG 1 cut(s) 432
Eco52I CGGCCG 1 cut(s) 21
Eco57I CTGAAG 3 cut(s) 143, 270, 321
Eco72I CACGTG 1 cut(s) 331
Eco88I CYCGRG 1 cut(s) 72
Eco91I GGTNACC 1 cut(s) 427
EcoO65I GGTNACC 1 cut(s) 427
EcoRII CCWGG 3 cut(s) 33, 492, 516
EcoT14I CCWWGG 1 cut(s) 432
ErhI CCWWGG 1 cut(s) 432
FaiI YATR 1 cut(s) 533
FauI CCCGC 2 cut(s) 98, 117
Fnu4HI GCNGC 5 cut(s) 24, 243, 318, 509, 537
FokI GGATG 4 cut(s) 101, 358, 368, 407
Fsp4HI GCNGC 5 cut(s) 24, 243, 318, 509, 537
GlaI GCGC 1 cut(s) 507
GluI GCNGC 5 cut(s) 24, 243, 318, 509, 537
GsuI CTGGAG 1 cut(s) 476
HaeIII GGCC 4 cut(s) 5, 23, 272, 290
HhaI GCGC 1 cut(s) 508
Hin1I GRCGYC 1 cut(s) 13
Hin6I GCGC 1 cut(s) 506
HinP1I GCGC 1 cut(s) 506
HinfI GANTC 3 cut(s) 360, 454, 527
Hpy188I TCNGA 4 cut(s) 148, 162, 250, 281
Hpy188III TCNNGA 3 cut(s) 50, 72, 74
Hpy99I CGWCG 1 cut(s) 15
HpyAV CCTTC 3 cut(s) 345, 362, 485
HpyCH4IV ACGT 3 cut(s) 13, 330, 411
HpyCH4V TGCA 2 cut(s) 212, 449
HpyF10VI GCNNNNNNNGC 7 cut(s) 44, 53, 185, 209, 218, 296, 317
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 3 cut(s) 13, 330, 411
Hsp92I GRCGYC 1 cut(s) 13
HspAI GCGC 1 cut(s) 506
Kzo9I GATC 4 cut(s) 110, 162, 169, 283
Lsp1109I GCAGC 2 cut(s) 229, 523
MaeII ACGT 3 cut(s) 13, 330, 411
MaeIII GTNAC 1 cut(s) 427
MalI GATC 4 cut(s) 112, 164, 171, 285
MboI GATC 4 cut(s) 110, 162, 169, 283
MboII GAAGA 2 cut(s) 227, 263
MfeI CAATTG 1 cut(s) 544
MflI RGATCY 1 cut(s) 169
MluCI AATT 1 cut(s) 544
MlyI GAGTC 2 cut(s) 354, 448
MmeI TCCRAC 1 cut(s) 504
MnlI CCTC 4 cut(s) 46, 160, 328, 500
MroXI GAANNNNTTC 1 cut(s) 376
MseI TTAA 1 cut(s) 101
MspR9I CCNGG 3 cut(s) 35, 494, 518
MunI CAATTG 1 cut(s) 544
Mva1269I GAATGC 1 cut(s) 205
MvaI CCWGG 3 cut(s) 35, 494, 518
MvnI CGCG 2 cut(s) 93, 508
MwoI GCNNNNNNNGC 7 cut(s) 44, 53, 185, 209, 218, 296, 317
NdeII GATC 4 cut(s) 110, 162, 169, 283
NlaIV GGNNCC 2 cut(s) 310, 473
PaeR7I CTCGAG 1 cut(s) 72
PctI GAATGC 1 cut(s) 205
PdmI GAANNNNTTC 1 cut(s) 376
PfeI GAWTC 1 cut(s) 527
PflMI CCANNNNNTGG 1 cut(s) 421
PfoI TCCNGGA 1 cut(s) 492
PkrI GCNGC 5 cut(s) 25, 244, 319, 510, 538
PleI GAGTC 2 cut(s) 354, 448
PmaCI CACGTG 1 cut(s) 331
PmlI CACGTG 1 cut(s) 331
PpsI GAGTC 2 cut(s) 354, 448
Ppu21I YACGTR 1 cut(s) 331
Psp6I CCWGG 3 cut(s) 33, 492, 516
PspCI CACGTG 1 cut(s) 331
PspEI GGTNACC 1 cut(s) 427
PspGI CCWGG 3 cut(s) 33, 492, 516
PspN4I GGNNCC 2 cut(s) 310, 473
PspPI GGNCC 3 cut(s) 4, 271, 288
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 1 cut(s) 405
RsaNI GTAC 1 cut(s) 404
SaqAI TTAA 1 cut(s) 101
SatI GCNGC 5 cut(s) 24, 243, 318, 509, 537
Sau3AI GATC 4 cut(s) 110, 162, 169, 283
Sau96I GGNCC 3 cut(s) 4, 271, 288
SchI GAGTC 2 cut(s) 354, 448
ScrFI CCNGG 3 cut(s) 35, 494, 518
SfcI CTRYAG 1 cut(s) 385
Sfr274I CTCGAG 1 cut(s) 72
SlaI CTCGAG 1 cut(s) 72
SmlI CTYRAG 3 cut(s) 48, 72, 456
SmoI CTYRAG 3 cut(s) 48, 72, 456
Sse9I AATT 1 cut(s) 544
SsiI CCGC 6 cut(s) 24, 91, 118, 124, 317, 508
StyD4I CCNGG 3 cut(s) 33, 492, 516
StyI CCWWGG 1 cut(s) 432
TaiI ACGT 3 cut(s) 16, 333, 414
TaqI TCGA 3 cut(s) 73, 165, 228
TasI AATT 1 cut(s) 544
TatI WGTACW 1 cut(s) 403
TauI GCSGC 3 cut(s) 26, 320, 511
TfiI GAWTC 1 cut(s) 527
Tru1I TTAA 1 cut(s) 101
Tru9I TTAA 1 cut(s) 101
TseI GCWGC 2 cut(s) 242, 536
TspDTI ATGAA 1 cut(s) 120
Van91I CCANNNNNTGG 1 cut(s) 421
XhoI CTCGAG 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 376
ZraI GACGTC 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.