Rroxscaffold_6G00393540

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000214
Physical Location & Seq
Reverse (-)
13706424 .. 13708621
2198 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00393540.1

Sequence Viewer

Length: 597 bp
ATGGCACCCAAGAAGCCATTCTTTATAGATCGTGCAGATGAAATCACCGAGAAAGCCGCATTCACCGGCGGACTAACATGGGTGTTCGATGCGAAGTCGACCGGAGAAGAGAGAAATCGACCGATGGGCTTTGGTGGAGTGGCCCTTTCGGATCCTCGCCTTTTGGATGCGATTTATTTCCCTCGCTTCCGTGGCGGTGATATTCCAAAGGATCCTCCGTCGATTGTCTTTTGGGGAATTGGCTTTGCCGCAACCAAAAACTACCGGAGGACAGCCTCTGTTCATGCTAGGAAACAAAAGGCAATAGCAGAGGAGACTCTGAGGGAGAGTCTTCTCATGATGAAGATCCCGCCGAGTGCCACCGTTGTCTTGGCTTGCAAACACGATCGTGCTCAATTCGTCGAAGAGAGTTTTGAAGATGACGAACCTCCGAGAATGCGATTGAGGACCACCGATCTCTCTCGCCCGAGCGAGGCTCGATCCTCAACCTCTGCAGAAGAGCCAATTCTCTCGCTAGCTCAAGCACCAACTAGCCCCGTGGCACCTCTTCCCTCTCACACATCTACAGAGCATCCGCAAGGTCCTAACATTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

198

Amino Acids

21.9

Weight (kDa)

7.9

Isoelectric Point (pI)

52.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 541
AccI GTMKAC 1 cut(s) 98
AciI CCGC 6 cut(s) 57, 69, 195, 249, 350, 575
AclWI GGATC 6 cut(s) 146, 159, 206, 219, 340, 474
AfiI CCNNNNNNNGG 1 cut(s) 472
AgsI TTSAA 1 cut(s) 416
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AleI CACNNNNGTG 1 cut(s) 387
AluBI AGCT 1 cut(s) 518
AluI AGCT 1 cut(s) 518
Alw21I GWGCWC 1 cut(s) 394
Alw26I GTCTC 1 cut(s) 308
AlwI GGATC 6 cut(s) 146, 159, 206, 219, 340, 474
AlwNI CAGNNNCTG 1 cut(s) 278
Ama87I CYCGRG 1 cut(s) 466
AoxI GGCC 1 cut(s) 141
Asp700I GAANNNNTTC 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 142, 447, 581
AsuHPI GGTGA 3 cut(s) 37, 55, 209
AsuNHI GCTAGC 1 cut(s) 514
AvaI CYCGRG 1 cut(s) 466
AvaII GGWCC 2 cut(s) 447, 581
BamHI GGATCC 2 cut(s) 151, 211
BanI GGYRCC 2 cut(s) 4, 541
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 394
BccI CCATC 1 cut(s) 118
BcoDI GTCTC 1 cut(s) 308
BfaI CTAG 3 cut(s) 288, 515, 531
BfmI CTRYAG 2 cut(s) 492, 564
BisI GCNGC 2 cut(s) 57, 249
BlsI GCNGC 2 cut(s) 58, 250
Bme18I GGWCC 2 cut(s) 447, 581
BmeT110I CYCGRG 1 cut(s) 466
BmgT120I GGNCC 3 cut(s) 142, 447, 581
BmiI GGNNCC 4 cut(s) 6, 153, 213, 543
BmsI GCATC 3 cut(s) 79, 157, 580
BmtI GCTAGC 1 cut(s) 518
BpiI GAAGAC 1 cut(s) 323
BplI GAGNNNNNCTC 2 cut(s) 460, 492
BpuEI CTTGAG 1 cut(s) 504
BsaBI GATNNNNATC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 190, 537
BsaWI WCCGGW 2 cut(s) 101, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 472
Bse118I RCCGGY 1 cut(s) 65
Bse8I GATNNNNATC 1 cut(s) 344
BseDI CCNNGG 2 cut(s) 190, 537
BseGI GGATG 2 cut(s) 172, 571
BseJI GATNNNNATC 1 cut(s) 344
BseLI CCNNNNNNNGG 1 cut(s) 472
BseMII CTCAG 1 cut(s) 311
BseRI GAGGAG 1 cut(s) 326
BsgI GTGCAG 1 cut(s) 54
Bsh1285I CGRYCG 3 cut(s) 102, 122, 388
BshFI GGCC 1 cut(s) 143
BshNI GGYRCC 2 cut(s) 4, 541
BsiEI CGRYCG 3 cut(s) 102, 122, 388
BsiHKAI GWGCWC 1 cut(s) 394
BsiHKCI CYCGRG 1 cut(s) 466
BsiSI CCGG 3 cut(s) 66, 102, 265
BslI CCNNNNNNNGG 1 cut(s) 472
BsmAI GTCTC 1 cut(s) 308
BsmI GAATGC 2 cut(s) 59, 441
BsnI GGCC 1 cut(s) 143
BsoBI CYCGRG 1 cut(s) 466
Bsp1286I GDGCHC 1 cut(s) 394
Bsp143I GATC 7 cut(s) 28, 151, 211, 345, 385, 454, 479
BspACI CCGC 6 cut(s) 57, 69, 195, 249, 350, 575
BspANI GGCC 1 cut(s) 143
BspCNI CTCAG 1 cut(s) 312
BspHI TCATGA 1 cut(s) 336
BspLI GGNNCC 4 cut(s) 6, 153, 213, 543
BspMAI CTGCAG 1 cut(s) 496
BspOI GCTAGC 1 cut(s) 518
BspPI GGATC 6 cut(s) 146, 159, 206, 219, 340, 474
BspQI GCTCTTC 1 cut(s) 492
BspT107I GGYRCC 2 cut(s) 4, 541
BsrFI RCCGGY 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 2 cut(s) 190, 537
BssMI GATC 7 cut(s) 28, 151, 211, 345, 385, 454, 479
Bst4CI ACNGT 1 cut(s) 364
Bst6I CTCTTC 4 cut(s) 102, 399, 492, 552
BstC8I GCNNGC 2 cut(s) 376, 516
BstDEI CTNAG 1 cut(s) 320
BstDSI CCRYGG 2 cut(s) 190, 537
BstF5I GGATG 2 cut(s) 172, 571
BstKTI GATC 7 cut(s) 31, 154, 214, 348, 388, 457, 482
BstMAI GTCTC 1 cut(s) 308
BstMBI GATC 7 cut(s) 28, 151, 211, 345, 385, 454, 479
BstMCI CGRYCG 3 cut(s) 102, 122, 388
BstMWI GCNNNNNNNGC 1 cut(s) 192
BstSFI CTRYAG 2 cut(s) 492, 564
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 3 cut(s) 151, 211, 345
BstYI RGATCY 3 cut(s) 151, 211, 345
BsuRI GGCC 1 cut(s) 143
BtgI CCRYGG 2 cut(s) 190, 537
BtsCI GGATG 2 cut(s) 172, 571
Cac8I GCNNGC 2 cut(s) 376, 516
CaiI CAGNNNCTG 1 cut(s) 278
CciI TCATGA 1 cut(s) 336
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 3 cut(s) 142, 447, 581
CviAII CATG 3 cut(s) 78, 284, 337
DdeI CTNAG 1 cut(s) 320
DpnI GATC 7 cut(s) 30, 153, 213, 347, 387, 456, 481
DpnII GATC 7 cut(s) 28, 151, 211, 345, 385, 454, 479
Eam1104I CTCTTC 4 cut(s) 102, 399, 492, 552
EarI CTCTTC 4 cut(s) 102, 399, 492, 552
EciI GGCGGA 1 cut(s) 84
Eco47I GGWCC 2 cut(s) 447, 581
Eco88I CYCGRG 1 cut(s) 466
EcoO109I RGGNCCY 1 cut(s) 581
FaeI CATG 3 cut(s) 81, 287, 340
FaiI YATR 4 cut(s) 26, 79, 285, 338
FalI AAGNNNNNCTT 1 cut(s) 37
FatI CATG 3 cut(s) 77, 283, 336
FauI CCCGC 1 cut(s) 357
FblI GTMKAC 1 cut(s) 98
Fnu4HI GCNGC 2 cut(s) 57, 249
FokI GGATG 2 cut(s) 179, 558
Fsp4HI GCNGC 2 cut(s) 57, 249
FspBI CTAG 3 cut(s) 288, 515, 531
GluI GCNGC 2 cut(s) 57, 249
HaeIII GGCC 1 cut(s) 143
HapII CCGG 3 cut(s) 66, 102, 265
Hin1II CATG 3 cut(s) 81, 287, 340
HincII GTYRAC 1 cut(s) 99
HindII GTYRAC 1 cut(s) 99
HinfI GANTC 2 cut(s) 316, 328
HpaII CCGG 3 cut(s) 66, 102, 265
HphI GGTGA 3 cut(s) 37, 55, 209
Hpy166II GTNNAC 1 cut(s) 99
Hpy188I TCNGA 3 cut(s) 151, 321, 432
Hpy188III TCNNGA 1 cut(s) 337
Hpy8I GTNNAC 1 cut(s) 99
Hpy99I CGWCG 2 cut(s) 223, 404
HpyCH4III ACNGT 1 cut(s) 364
HpyCH4V TGCA 3 cut(s) 35, 378, 494
HpyF10VI GCNNNNNNNGC 1 cut(s) 192
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 3 cut(s) 81, 287, 340
Kzo9I GATC 7 cut(s) 28, 151, 211, 345, 385, 454, 479
LguI GCTCTTC 1 cut(s) 492
LpnPI CCDG 3 cut(s) 79, 115, 278
LweI GCATC 3 cut(s) 79, 157, 580
MaeI CTAG 3 cut(s) 288, 515, 531
MalI GATC 7 cut(s) 30, 153, 213, 347, 387, 456, 481
MboI GATC 7 cut(s) 28, 151, 211, 345, 385, 454, 479
MboII GAAGA 7 cut(s) 119, 323, 355, 416, 428, 509, 539
MflI RGATCY 3 cut(s) 151, 211, 345
MhlI GDGCHC 1 cut(s) 394
MluCI AATT 3 cut(s) 237, 395, 504
MlyI GAGTC 2 cut(s) 310, 337
MroXI GAANNNNTTC 1 cut(s) 17
MslI CAYNNNNRTG 1 cut(s) 387
MspI CCGG 3 cut(s) 66, 102, 265
Mva1269I GAATGC 2 cut(s) 59, 441
MwoI GCNNNNNNNGC 1 cut(s) 192
NdeII GATC 7 cut(s) 28, 151, 211, 345, 385, 454, 479
NheI GCTAGC 1 cut(s) 514
NlaIII CATG 3 cut(s) 81, 287, 340
NlaIV GGNNCC 4 cut(s) 6, 153, 213, 543
NmeAIII GCCGAG 1 cut(s) 378
OliI CACNNNNGTG 1 cut(s) 387
PagI TCATGA 1 cut(s) 336
PciSI GCTCTTC 1 cut(s) 492
PctI GAATGC 2 cut(s) 59, 441
PdmI GAANNNNTTC 1 cut(s) 17
PkrI GCNGC 2 cut(s) 58, 250
Ple19I CGATCG 1 cut(s) 388
PleI GAGTC 2 cut(s) 310, 336
PpsI GAGTC 2 cut(s) 310, 336
PpuMI RGGWCCY 1 cut(s) 581
Psp5II RGGWCCY 1 cut(s) 581
PspN4I GGNNCC 4 cut(s) 6, 153, 213, 543
PspPI GGNCC 3 cut(s) 142, 447, 581
PspPPI RGGWCCY 1 cut(s) 581
PstI CTGCAG 1 cut(s) 496
PstNI CAGNNNCTG 1 cut(s) 278
PsuI RGATCY 3 cut(s) 151, 211, 345
PvuI CGATCG 1 cut(s) 388
RseI CAYNNNNRTG 1 cut(s) 387
SalI GTCGAC 1 cut(s) 97
SapI GCTCTTC 1 cut(s) 492
SatI GCNGC 2 cut(s) 57, 249
Sau3AI GATC 7 cut(s) 28, 151, 211, 345, 385, 454, 479
Sau96I GGNCC 3 cut(s) 142, 447, 581
SchI GAGTC 2 cut(s) 310, 337
SduI GDGCHC 1 cut(s) 394
SetI ASST 5 cut(s) 430, 491, 520, 547, 583
SfaNI GCATC 3 cut(s) 79, 157, 580
SfcI CTRYAG 2 cut(s) 492, 564
SgrAI CRCCGGYG 1 cut(s) 65
SinI GGWCC 2 cut(s) 447, 581
SmiMI CAYNNNNRTG 1 cut(s) 387
SmlI CTYRAG 1 cut(s) 519
SmoI CTYRAG 1 cut(s) 519
Sse9I AATT 3 cut(s) 237, 395, 504
SsiI CCGC 6 cut(s) 57, 69, 195, 249, 350, 575
SspMI CTAG 3 cut(s) 288, 515, 531
TaaI ACNGT 1 cut(s) 364
TaqI TCGA 7 cut(s) 87, 98, 118, 221, 402, 478, 592
TaqII GACCGA 1 cut(s) 136
TasI AATT 3 cut(s) 237, 395, 504
TauI GCSGC 2 cut(s) 59, 251
TspDTI ATGAA 3 cut(s) 54, 272, 356
TspGWI ACGGA 2 cut(s) 179, 207
VpaK11BI GGWCC 2 cut(s) 447, 581
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XmiI GTMKAC 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 3 cut(s) 288, 515, 531
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.