Rmu_sc0001097.1_g000032

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001097.1
OG0000214
Physical Location & Seq
Reverse (-)
114624 .. 115742
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001097.1_g000032.1.cds

Sequence Viewer

Length: 900 bp
atggcacccaagaagccattcgttatcgatcaggcagatgaaatcaccgagaaagttgcattcacctggcggactaacatgggtgttcgatgcagaagtcagaccagagaggagataagaggtccgagcgagagatttggccctttgagatgcggtgggtatcacccaaaccatcgatctatgcttctgtcttctccacaataccagccctgcaccactagccgccgctcatttcttatggaacacctccagcaatacattcgatttccggtttgggcagatgagcataactctgctagatgttcttaccatcacgggttgcccattgactttgacccctatgtgcatgatcagtttggtggcattcaatttcctttgagaatggatatggttggtcgggggcatcacagcaaatcctacccattccagcgtgactattattgcacccagcgtgaccacacaggatgtatcacattcctagaattctggctttgcaaatttatcttttgcacttcttccaacaaacctactaggccttggaattctctggccactgctctttataatggtatttgcgttggccttgggcaacctatattgggtgcgttatatcgctccctttataaagccgtaatgcgccccttcgatactgacattagtggccctttctggatcctcaccttttggctgcatatttattttcctcgcttcctatgcggtgatattccaaaggatcctccagtcgattcccttttggggaattggctttgctgcaatgtaaggtatcgagctctaccctactccgagtgttttatttacttgtacttgctggaagagatgtcggacccaaaaatagtcctttctaggcgattccctcctccagtctgggaagggatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMD

Protein Analysis

299

Amino Acids

34.99

Weight (kDa)

8.64

Isoelectric Point (pI)

51.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000214)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0079611
rosa_multiflora Rmu_co8150358.1_g000001 Rmu_co8306601.1_g000001 Rmu_sc0000032.1_g000018 Rmu_sc0000110.1_g000025 Rmu_sc0000110.1_g000026 Rmu_sc0000126.1_g000018 Rmu_sc0000147.1_g000058 Rmu_sc0000187.1_g000010 Rmu_sc0000240.1_g000061 Rmu_sc0000240.1_g000062 Rmu_sc0000258.1_g000018 Rmu_sc0000258.1_g000020 Rmu_sc0000276.1_g000075 Rmu_sc0000276.1_g000076 Rmu_sc0000356.1_g000007 Rmu_sc0000360.1_g000033 Rmu_sc0000368.1_g000014 Rmu_sc0000368.1_g000026 Rmu_sc0000389.1_g000011 Rmu_sc0000588.1_g000024 Rmu_sc0000595.1_g000060 Rmu_sc0000744.1_g000144 Rmu_sc0000744.1_g000145 Rmu_sc0000770.1_g000053 Rmu_sc0000795.1_g000096 Rmu_sc0000810.1_g000011 Rmu_sc0000935.1_g000066 Rmu_sc0000945.1_g000014 Rmu_sc0000962.1_g000011 Rmu_sc0000962.1_g000023 Rmu_sc0000962.1_g000024 Rmu_sc0001047.1_g000012 Rmu_sc0001094.1_g000015 Rmu_sc0001097.1_g000032 Rmu_sc0001254.1_g000006 Rmu_sc0001264.1_g000026 Rmu_sc0001322.1_g000013 Rmu_sc0001373.1_g000001 Rmu_sc0001424.1_g000002 Rmu_sc0001455.1_g000009 Rmu_sc0001461.1_g000008 Rmu_sc0001461.1_g000058 Rmu_sc0001563.1_g000014 Rmu_sc0001793.1_g000012 Rmu_sc0001793.1_g000013 Rmu_sc0001796.1_g000010 Rmu_sc0001817.1_g000004 Rmu_sc0002141.1_g000011 Rmu_sc0002141.1_g000012 Rmu_sc0002183.1_g000010 Rmu_sc0002183.1_g000015 Rmu_sc0002212.1_g000033 Rmu_sc0002212.1_g000034 Rmu_sc0002263.1_g000049 Rmu_sc0002263.1_g000050 Rmu_sc0002263.1_g000055 Rmu_sc0002263.1_g000056 Rmu_sc0002489.1_g000039 Rmu_sc0002654.1_g000003 Rmu_sc0002680.1_g000036 Rmu_sc0002745.1_g000013 Rmu_sc0002751.1_g000001 Rmu_sc0002769.1_g000013 Rmu_sc0002972.1_g000004 Rmu_sc0002985.1_g000011 Rmu_sc0003199.1_g000002 Rmu_sc0003207.1_g000020 Rmu_sc0003402.1_g000005 Rmu_sc0003500.1_g000009 Rmu_sc0003500.1_g000010 Rmu_sc0003600.1_g000051 Rmu_sc0003809.1_g000025 Rmu_sc0003859.1_g000029 Rmu_sc0003859.1_g000030 Rmu_sc0003994.1_g000025 Rmu_sc0004085.1_g000010 Rmu_sc0004085.1_g000015 Rmu_sc0004165.1_g000061 Rmu_sc0004525.1_g000006 Rmu_sc0004549.1_g000012 Rmu_sc0004598.1_g000035 Rmu_sc0004835.1_g000007 Rmu_sc0004881.1_g000008 Rmu_sc0005325.1_g000004 Rmu_sc0005325.1_g000006 Rmu_sc0005608.1_g000003 Rmu_sc0005747.1_g000026 Rmu_sc0006153.1_g000059 Rmu_sc0006273.1_g000010 Rmu_sc0006737.1_g000002 Rmu_sc0006737.1_g000003 Rmu_sc0006984.1_g000006 Rmu_sc0006984.1_g000007 Rmu_sc0007170.1_g000001 Rmu_sc0007801.1_g000002 Rmu_sc0007992.1_g000008 Rmu_sc0008698.1_g000003 Rmu_sc0010817.1_g000001 Rmu_sc0010817.1_g000021 Rmu_sc0011207.1_g000001 Rmu_sc0012533.1_g000007 Rmu_sc0012742.1_g000008 Rmu_sc0014075.1_g000001 Rmu_sc0017009.1_g000004 Rmu_sc0018430.1_g000002 Rmu_sc0020146.1_g000003 Rmu_sc0021186.1_g000001 Rmu_sc0023004.1_g000001 Rmu_sc0024933.1_g000001 Rmu_sc0026002.1_g000001 Rmu_sc0026989.1_g000005 Rmu_sc0028107.1_g000001 Rmu_sc0028108.1_g000001 Rmu_sc0032899.1_g000001 Rmu_sc0039686.1_g000001 Rmu_ssc0000134.1_g000054 Rmu_ssc0000213.1_g000089 Rmu_ssc0000295.1_g000043 Rmu_ssc0000295.1_g000045 Rmu_ssc0000309.1_g000024 Rmu_ssc0000309.1_g000025 Rmu_ssc0000438.1_g000003 Rmu_ssc0000438.1_g000017 Rmu_ssc0000438.1_g000018
rosa_roxburghii Rroxscaffold_1G00020710 Rroxscaffold_2G00077350 Rroxscaffold_2G00077360 Rroxscaffold_2G00137810 Rroxscaffold_2G00142810 Rroxscaffold_2G00143580 Rroxscaffold_2G00152890 Rroxscaffold_3G00248850 Rroxscaffold_4G00324400 Rroxscaffold_4G00329960 Rroxscaffold_4G00329970 Rroxscaffold_5G00339350 Rroxscaffold_5G00343640 Rroxscaffold_6G00393540 Rroxscaffold_6G00400820 Rroxscaffold_6G00408530 Rroxscaffold_6G00408540 Rroxscaffold_6G00414590 Rroxscaffold_6G00414600 Rroxscaffold_7G00180540 Rroxscaffold_7G00199530 Rroxscaffold_7G00203170 Rroxscaffold_7G00217520
rosa_samantha Rh3DG208400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 564, 624
AccB1I GGYRCC 1 cut(s) 4
AccBSI CCGCTC 1 cut(s) 228
AciI CCGC 5 cut(s) 70, 153, 223, 226, 717
AclWI GGATC 4 cut(s) 667, 680, 728, 741
AcoI YGGCCR 1 cut(s) 549
AcsI RAATTY 3 cut(s) 482, 497, 541
AfaI GTAC 1 cut(s) 824
AfiI CCNNNNNNNGG 2 cut(s) 599, 756
AgsI TTSAA 1 cut(s) 368
AjnI CCWGG 1 cut(s) 65
AjuI GAANNNNNNNTTGG 1 cut(s) 34
AluBI AGCT 1 cut(s) 791
AluI AGCT 1 cut(s) 791
Alw21I GWGCWC 1 cut(s) 793
AlwI GGATC 4 cut(s) 667, 680, 728, 741
AoxI GGCC 5 cut(s) 139, 533, 549, 580, 661
ApeKI GCWGC 2 cut(s) 688, 771
ApoI RAATTY 3 cut(s) 482, 497, 541
Asp700I GAANNNNTTC 1 cut(s) 17
AspLEI GCGC 1 cut(s) 639
AspS9I GGNCC 4 cut(s) 122, 140, 662, 844
AsuHPI GGTGA 5 cut(s) 37, 55, 155, 670, 731
AvaII GGWCC 2 cut(s) 122, 844
BalI TGGCCA 1 cut(s) 551
BamHI GGATCC 2 cut(s) 672, 733
BanI GGYRCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 793
BbsI GAAGAC 1 cut(s) 183
Bbv12I GWGCWC 1 cut(s) 793
BbvI GCAGC 2 cut(s) 675, 758
BccI CCATC 2 cut(s) 180, 318
BceAI ACGGC 1 cut(s) 614
BcgI CGANNNNNNTGC 4 cut(s) 38, 72, 242, 276
BciT130I CCWGG 1 cut(s) 67
BclI TGATCA 1 cut(s) 349
BfaI CTAG 5 cut(s) 219, 297, 479, 531, 864
BisI GCNGC 4 cut(s) 223, 226, 689, 772
BlsI GCNGC 4 cut(s) 224, 227, 690, 773
Bme1390I CCNGG 1 cut(s) 67
Bme18I GGWCC 2 cut(s) 122, 844
BmgT120I GGNCC 4 cut(s) 122, 140, 662, 844
BmiI GGNNCC 4 cut(s) 6, 674, 735, 846
BmrFI CCNGG 1 cut(s) 67
BmsI GCATC 3 cut(s) 80, 140, 412
BpiI GAAGAC 1 cut(s) 183
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpmI CTGGAG 3 cut(s) 233, 723, 864
Bsa29I ATCGAT 2 cut(s) 27, 175
BsaJI CCNNGG 2 cut(s) 536, 583
BsaWI WCCGGW 1 cut(s) 268
Bsc4I CCNNNNNNNGG 2 cut(s) 599, 756
Bse1I ACTGG 2 cut(s) 740, 881
Bse3DI GCAATG 1 cut(s) 781
BseBI CCWGG 1 cut(s) 67
BseCI ATCGAT 2 cut(s) 27, 175
BseDI CCNNGG 2 cut(s) 536, 583
BseGI GGATG 1 cut(s) 470
BseLI CCNNNNNNNGG 2 cut(s) 599, 756
BseMI GCAATG 1 cut(s) 781
BseNI ACTGG 2 cut(s) 740, 881
BseRI GAGGAG 2 cut(s) 125, 867
BseXI GCAGC 2 cut(s) 675, 758
BseYI CCCAGC 1 cut(s) 447
BsgI GTGCAG 1 cut(s) 196
BshFI GGCC 5 cut(s) 141, 535, 551, 582, 663
BshNI GGYRCC 1 cut(s) 4
BshVI ATCGAT 2 cut(s) 27, 175
BsiHKAI GWGCWC 1 cut(s) 793
BsiSI CCGG 1 cut(s) 269
BslI CCNNNNNNNGG 2 cut(s) 599, 756
BsmI GAATGC 2 cut(s) 59, 363
BsnI GGCC 5 cut(s) 141, 535, 551, 582, 663
Bsp1286I GDGCHC 1 cut(s) 793
Bsp143I GATC 6 cut(s) 28, 176, 349, 672, 733, 894
BspACI CCGC 5 cut(s) 70, 153, 223, 226, 717
BspANI GGCC 5 cut(s) 141, 535, 551, 582, 663
BspDI ATCGAT 2 cut(s) 27, 175
BspLI GGNNCC 4 cut(s) 6, 674, 735, 846
BspPI GGATC 4 cut(s) 667, 680, 728, 741
BspT107I GGYRCC 1 cut(s) 4
BsrBI CCGCTC 1 cut(s) 228
BsrDI GCAATG 1 cut(s) 781
BsrI ACTGG 2 cut(s) 740, 881
BssECI CCNNGG 2 cut(s) 536, 583
BssMI GATC 6 cut(s) 28, 176, 349, 672, 733, 894
BssT1I CCWWGG 2 cut(s) 536, 583
Bst2UI CCWGG 1 cut(s) 67
Bst6I CTCTTC 1 cut(s) 828
BstF5I GGATG 1 cut(s) 470
BstHHI GCGC 1 cut(s) 639
BstKTI GATC 6 cut(s) 31, 179, 352, 675, 736, 897
BstMBI GATC 6 cut(s) 28, 176, 349, 672, 733, 894
BstMWI GCNNNNNNNGC 2 cut(s) 219, 714
BstNI CCWGG 1 cut(s) 67
BstSCI CCNGG 1 cut(s) 65
BstV1I GCAGC 2 cut(s) 675, 758
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 3 cut(s) 672, 733, 894
BstYI RGATCY 3 cut(s) 672, 733, 894
Bsu15I ATCGAT 2 cut(s) 27, 175
BsuRI GGCC 5 cut(s) 141, 535, 551, 582, 663
BsuTUI ATCGAT 2 cut(s) 27, 175
BtsCI GGATG 1 cut(s) 470
BtsI GCAGTG 1 cut(s) 552
BtsIMutI CAGTG 1 cut(s) 552
CfoI GCGC 1 cut(s) 639
Cfr13I GGNCC 4 cut(s) 122, 140, 662, 844
ClaI ATCGAT 2 cut(s) 27, 175
Csp6I GTAC 1 cut(s) 823
CviAII CATG 2 cut(s) 79, 347
CviQI GTAC 1 cut(s) 823
DpnI GATC 6 cut(s) 30, 178, 351, 674, 735, 896
DpnII GATC 6 cut(s) 28, 176, 349, 672, 733, 894
EaeI YGGCCR 1 cut(s) 549
Eam1104I CTCTTC 1 cut(s) 828
EarI CTCTTC 1 cut(s) 828
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 791
Eco130I CCWWGG 2 cut(s) 536, 583
Eco147I AGGCCT 1 cut(s) 535
Eco24I GRGCYC 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 122, 844
Eco53kI GAGCTC 1 cut(s) 791
EcoICRI GAGCTC 1 cut(s) 791
EcoRI GAATTC 2 cut(s) 482, 541
EcoRII CCWGG 1 cut(s) 65
EcoT14I CCWWGG 2 cut(s) 536, 583
EcoT38I GRGCYC 1 cut(s) 793
ErhI CCWWGG 2 cut(s) 536, 583
FaeI CATG 2 cut(s) 82, 350
FatI CATG 2 cut(s) 78, 346
FbaI TGATCA 1 cut(s) 349
Fnu4HI GCNGC 4 cut(s) 223, 226, 689, 772
FokI GGATG 1 cut(s) 477
FriOI GRGCYC 1 cut(s) 793
Fsp4HI GCNGC 4 cut(s) 223, 226, 689, 772
FspBI CTAG 5 cut(s) 219, 297, 479, 531, 864
GlaI GCGC 1 cut(s) 638
GluI GCNGC 4 cut(s) 223, 226, 689, 772
GsaI CCCAGC 1 cut(s) 451
GsuI CTGGAG 3 cut(s) 233, 723, 864
HaeIII GGCC 5 cut(s) 141, 535, 551, 582, 663
HapII CCGG 1 cut(s) 269
HhaI GCGC 1 cut(s) 639
Hin1II CATG 2 cut(s) 82, 350
Hin6I GCGC 1 cut(s) 637
HinP1I GCGC 1 cut(s) 637
HinfI GANTC 2 cut(s) 746, 870
HpaII CCGG 1 cut(s) 269
HphI GGTGA 5 cut(s) 37, 55, 155, 670, 731
Hpy188I TCNGA 4 cut(s) 102, 126, 805, 844
Hpy188III TCNNGA 1 cut(s) 670
HpyAV CCTTC 2 cut(s) 652, 884
HpyCH4V TGCA 9 cut(s) 59, 93, 213, 346, 444, 495, 510, 691, 774
HpyF10VI GCNNNNNNNGC 2 cut(s) 219, 714
Hsp92II CATG 2 cut(s) 82, 350
HspAI GCGC 1 cut(s) 637
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 6 cut(s) 28, 176, 349, 672, 733, 894
LmnI GCTCC 1 cut(s) 620
Lsp1109I GCAGC 2 cut(s) 675, 758
LweI GCATC 3 cut(s) 80, 140, 412
MaeI CTAG 5 cut(s) 219, 297, 479, 531, 864
MaeIII GTNAC 2 cut(s) 431, 452
MalI GATC 6 cut(s) 30, 178, 351, 674, 735, 896
MbiI CCGCTC 1 cut(s) 228
MboI GATC 6 cut(s) 28, 176, 349, 672, 733, 894
MboII GAAGA 3 cut(s) 183, 507, 845
MflI RGATCY 3 cut(s) 672, 733, 894
MhlI GDGCHC 1 cut(s) 793
MlsI TGGCCA 1 cut(s) 551
MluCI AATT 5 cut(s) 368, 482, 497, 541, 760
MluNI TGGCCA 1 cut(s) 551
MmeI TCCRAC 2 cut(s) 543, 822
MnlI CCTC 8 cut(s) 103, 113, 257, 686, 714, 747, 885, 888
Mox20I TGGCCA 1 cut(s) 551
MroXI GAANNNNTTC 1 cut(s) 17
MscI TGGCCA 1 cut(s) 551
Msp20I TGGCCA 1 cut(s) 551
MspI CCGG 1 cut(s) 269
MspR9I CCNGG 1 cut(s) 67
Mva1269I GAATGC 2 cut(s) 59, 363
MvaI CCWGG 1 cut(s) 67
MwoI GCNNNNNNNGC 2 cut(s) 219, 714
NdeII GATC 6 cut(s) 28, 176, 349, 672, 733, 894
NlaIII CATG 2 cut(s) 82, 350
NlaIV GGNNCC 4 cut(s) 6, 674, 735, 846
NmuCI GTSAC 2 cut(s) 431, 452
PceI AGGCCT 1 cut(s) 535
PctI GAATGC 2 cut(s) 59, 363
PdmI GAANNNNTTC 1 cut(s) 17
PfeI GAWTC 2 cut(s) 746, 870
PkrI GCNGC 4 cut(s) 224, 227, 690, 773
PsiI TTATAA 2 cut(s) 564, 624
Psp124BI GAGCTC 1 cut(s) 793
Psp6I CCWGG 1 cut(s) 65
PspFI CCCAGC 1 cut(s) 447
PspGI CCWGG 1 cut(s) 65
PspN4I GGNNCC 4 cut(s) 6, 674, 735, 846
PspPI GGNCC 4 cut(s) 122, 140, 662, 844
PsuI RGATCY 3 cut(s) 672, 733, 894
RsaI GTAC 1 cut(s) 824
RsaNI GTAC 1 cut(s) 823
SacI GAGCTC 1 cut(s) 793
SatI GCNGC 4 cut(s) 223, 226, 689, 772
Sau3AI GATC 6 cut(s) 28, 176, 349, 672, 733, 894
Sau96I GGNCC 4 cut(s) 122, 140, 662, 844
ScrFI CCNGG 1 cut(s) 67
SduI GDGCHC 1 cut(s) 793
SetI ASST 8 cut(s) 68, 124, 249, 529, 595, 683, 785, 793
SfaNI GCATC 3 cut(s) 80, 140, 412
SinI GGWCC 2 cut(s) 122, 844
Sse9I AATT 5 cut(s) 368, 482, 497, 541, 760
SseBI AGGCCT 1 cut(s) 535
SsiI CCGC 5 cut(s) 70, 153, 223, 226, 717
SspMI CTAG 5 cut(s) 219, 297, 479, 531, 864
SstI GAGCTC 1 cut(s) 793
StuI AGGCCT 1 cut(s) 535
StyD4I CCNGG 1 cut(s) 65
StyI CCWWGG 2 cut(s) 536, 583
TaqI TCGA 7 cut(s) 27, 88, 175, 262, 645, 744, 787
TasI AATT 5 cut(s) 368, 482, 497, 541, 760
TatI WGTACW 1 cut(s) 822
TauI GCSGC 2 cut(s) 225, 228
TfiI GAWTC 2 cut(s) 746, 870
TscAI CASTG 1 cut(s) 559
TseFI GTSAC 2 cut(s) 431, 452
TseI GCWGC 2 cut(s) 688, 771
Tsp45I GTSAC 2 cut(s) 431, 452
TspDTI ATGAA 1 cut(s) 54
TspRI CASTG 1 cut(s) 559
VpaK11BI GGWCC 2 cut(s) 122, 844
XapI RAATTY 3 cut(s) 482, 497, 541
XmnI GAANNNNTTC 1 cut(s) 17
XspI CTAG 5 cut(s) 219, 297, 479, 531, 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.