AT3G59650

Mitochondrial ribosomal protein L51 S25 CI-B8 family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0000172
Physical Location & Seq
Forward (+)
22033129 .. 22034228
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G59650.2

Sequence Viewer

Length: 360 bp
ATGGCGCTTAGAGGAGTTTGGCAGCTCAAGAAACTCGTTGTGAGCTACTGTAATTGGGGTGGTAGCAGTAGAGGCATCAGAGCCTTTATGGAATCAGAATTGCCTGCTCTAAAGGAGAAAAACCCGCAGCTCGAAGTAATTACCGAGCTTTCACGGGGACAACATCCTTATTTGAAGGGCATTTACAGGAATAGAAATGAAAGGGTAGTGTGTGTGAAGAACATGGATCCTGAAGAAGTGCTTTTGAATGCAACGAGGCTGAGGAACTCGCTTGGACGGAAAGTGGTTAAACTGAGGACCAGACATGTCACCAAACACCCCAGTGTTCAAGGCACCTGGACAACTGCTGTCAAATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
L51_S25_CI-B8

Protein Analysis

119

Amino Acids

13.7

Weight (kDa)

10.47

Isoelectric Point (pI)

24.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
L51_S25_CI-B8 PF05047 26 - 104 8e-12 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 332
AciI CCGC 1 cut(s) 125
AclWI GGATC 2 cut(s) 221, 234
AcsI RAATTY 1 cut(s) 353
AcuI CTGAAG 1 cut(s) 252
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 3 cut(s) 175, 247, 329
AjnI CCWGG 1 cut(s) 335
AleI CACNNNNGTG 1 cut(s) 321
AluBI AGCT 4 cut(s) 25, 45, 130, 148
AluI AGCT 4 cut(s) 25, 45, 130, 148
AlwI GGATC 2 cut(s) 221, 234
ApeKI GCWGC 2 cut(s) 22, 127
ApoI RAATTY 1 cut(s) 353
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 1 cut(s) 297
AsuHPI GGTGA 1 cut(s) 301
AvaII GGWCC 1 cut(s) 297
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BbvCI CCTCAGC 1 cut(s) 260
BbvI GCAGC 2 cut(s) 34, 139
BciT130I CCWGG 1 cut(s) 337
BfoI RGCGCY 1 cut(s) 8
BisI GCNGC 2 cut(s) 23, 128
BlsI GCNGC 2 cut(s) 24, 129
Bme1390I CCNGG 1 cut(s) 337
Bme18I GGWCC 1 cut(s) 297
BmgT120I GGNCC 1 cut(s) 297
BmiI GGNNCC 2 cut(s) 228, 334
BmrFI CCNGG 1 cut(s) 337
BmrI ACTGGG 1 cut(s) 315
BmsI GCATC 1 cut(s) 84
BmuI ACTGGG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 260
BpuEI CTTGAG 1 cut(s) 11
Bse1I ACTGG 1 cut(s) 321
BseBI CCWGG 1 cut(s) 337
BseGI GGATG 1 cut(s) 163
BseMII CTCAG 2 cut(s) 251, 284
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 27
BseXI GCAGC 2 cut(s) 34, 139
BshNI GGYRCC 1 cut(s) 332
BslFI GGGAC 1 cut(s) 171
BsmFI GGGAC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 253
Bsp143I GATC 1 cut(s) 226
BspACI CCGC 1 cut(s) 125
BspCNI CTCAG 2 cut(s) 252, 285
BspLI GGNNCC 2 cut(s) 228, 334
BspPI GGATC 2 cut(s) 221, 234
BspT107I GGYRCC 1 cut(s) 332
BsrI ACTGG 1 cut(s) 321
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 337
Bst4CI ACNGT 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 105
BstDEI CTNAG 3 cut(s) 8, 260, 293
BstF5I GGATG 1 cut(s) 163
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstMWI GCNNNNNNNGC 1 cut(s) 72
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 34, 139
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BtsCI GGATG 1 cut(s) 163
BtsIMutI CAGTG 1 cut(s) 328
Cac8I GCNNGC 1 cut(s) 105
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 297
CviAII CATG 2 cut(s) 223, 305
CviJI RGCY 6 cut(s) 25, 45, 83, 130, 148, 259
CviKI_1 RGCY 6 cut(s) 25, 45, 83, 130, 148, 259
DdeI CTNAG 3 cut(s) 8, 260, 293
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 297
Eco57I CTGAAG 1 cut(s) 252
EcoRII CCWGG 1 cut(s) 335
FaeI CATG 2 cut(s) 226, 308
FaiI YATR 3 cut(s) 89, 224, 306
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FaqI GGGAC 1 cut(s) 171
FatI CATG 2 cut(s) 222, 304
FauI CCCGC 1 cut(s) 132
Fnu4HI GCNGC 2 cut(s) 23, 128
FokI GGATG 1 cut(s) 150
Fsp4HI GCNGC 2 cut(s) 23, 128
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 23, 128
HaeII RGCGCY 1 cut(s) 8
HhaI GCGC 1 cut(s) 7
Hin1II CATG 2 cut(s) 226, 308
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HinfI GANTC 1 cut(s) 92
HphI GGTGA 1 cut(s) 301
Hpy188I TCNGA 3 cut(s) 80, 97, 359
Hpy188III TCNNGA 2 cut(s) 28, 230
HpyAV CCTTC 1 cut(s) 169
HpyCH4III ACNGT 1 cut(s) 50
HpyCH4V TGCA 1 cut(s) 251
HpyF10VI GCNNNNNNNGC 1 cut(s) 72
HpyF3I CTNAG 3 cut(s) 8, 260, 293
Hsp92II CATG 2 cut(s) 226, 308
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 7 cut(s) 117, 172, 243, 313, 322, 334, 349
Lsp1109I GCAGC 2 cut(s) 34, 139
LweI GCATC 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 307
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 2 cut(s) 229, 245
MflI RGATCY 1 cut(s) 226
MluCI AATT 4 cut(s) 52, 98, 138, 353
MnlI CCTC 5 cut(s) 5, 65, 249, 255, 288
MseI TTAA 1 cut(s) 288
MslI CAYNNNNRTG 1 cut(s) 321
MspR9I CCNGG 1 cut(s) 337
Mva1269I GAATGC 1 cut(s) 253
MvaI CCWGG 1 cut(s) 337
MwoI GCNNNNNNNGC 1 cut(s) 72
NdeII GATC 1 cut(s) 226
NlaIII CATG 2 cut(s) 226, 308
NlaIV GGNNCC 2 cut(s) 228, 334
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 1 cut(s) 308
OliI CACNNNNGTG 1 cut(s) 321
PciI ACATGT 1 cut(s) 304
PctI GAATGC 1 cut(s) 253
PfeI GAWTC 1 cut(s) 92
PkrI GCNGC 2 cut(s) 24, 129
PscI ACATGT 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 335
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 2 cut(s) 228, 334
PspPI GGNCC 1 cut(s) 297
PsuI RGATCY 1 cut(s) 226
RseI CAYNNNNRTG 1 cut(s) 321
SaqAI TTAA 1 cut(s) 288
SatI GCNGC 2 cut(s) 23, 128
Sau3AI GATC 1 cut(s) 226
Sau96I GGNCC 1 cut(s) 297
ScrFI CCNGG 1 cut(s) 337
SetI ASST 5 cut(s) 27, 47, 132, 150, 338
SfaNI GCATC 1 cut(s) 84
SinI GGWCC 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 321
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 4 cut(s) 52, 98, 138, 353
SsiI CCGC 1 cut(s) 125
StyD4I CCNGG 1 cut(s) 335
TaaI ACNGT 1 cut(s) 50
TaqI TCGA 1 cut(s) 132
TasI AATT 4 cut(s) 52, 98, 138, 353
TfiI GAWTC 1 cut(s) 92
Tru1I TTAA 1 cut(s) 288
Tru9I TTAA 1 cut(s) 288
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 2 cut(s) 22, 127
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 1 cut(s) 213
TspGWI ACGGA 1 cut(s) 292
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 1 cut(s) 353
XceI RCATGY 1 cut(s) 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.