FvH4_6g20381

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
14004118 .. 14004637
520 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g20381.t1

Sequence Viewer

Length: 267 bp
ATGGTGCCTCTTCCCCTAAACCCTAATGAGTTAGGGTTCTCAGTTGCTGCTGATGGCAATCTTAACATTGTGAAAACCGGAAAATCTCTAAAGAAAAGGGGCCGCCCCCGTGGTAGCAGAAACAAGAAGAAGAGTTTAATAGAGATCTTCGATTCCATGGCACCAGGAACAGTGGTGGAAGAGAAAAAGGATGCGTCCGAGACTGAGGAAGGCTTATTTCCTAGCATTGATCGTTCTACCATCATTGATTATTGGCTATATGCCTAA

Protein Analysis

89

Amino Acids

9.74

Weight (kDa)

9.0

Isoelectric Point (pI)

58.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 4, 160
AciI CCGC 1 cut(s) 103
AjnI CCWGG 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 194
AlwNI CAGNNNCTG 1 cut(s) 47
AoxI GGCC 1 cut(s) 100
ApeKI GCWGC 1 cut(s) 47
AspS9I GGNCC 1 cut(s) 100
BanI GGYRCC 2 cut(s) 4, 160
BbvI GCAGC 1 cut(s) 34
BccI CCATC 2 cut(s) 47, 248
BciT130I CCWGG 1 cut(s) 165
BcoDI GTCTC 1 cut(s) 194
BfaI CTAG 1 cut(s) 222
BglII AGATCT 1 cut(s) 144
BisI GCNGC 2 cut(s) 48, 103
BlsI GCNGC 2 cut(s) 49, 104
Bme1390I CCNGG 1 cut(s) 165
BmgT120I GGNCC 1 cut(s) 100
BmiI GGNNCC 3 cut(s) 6, 101, 162
BmrFI CCNGG 1 cut(s) 165
BmsI GCATC 1 cut(s) 181
BsaBI GATNNNNATC 1 cut(s) 57
BsaJI CCNNGG 2 cut(s) 109, 156
BsaWI WCCGGW 1 cut(s) 77
Bse8I GATNNNNATC 1 cut(s) 57
BseBI CCWGG 1 cut(s) 165
BseDI CCNNGG 2 cut(s) 109, 156
BseGI GGATG 1 cut(s) 196
BseJI GATNNNNATC 1 cut(s) 57
BseMII CTCAG 2 cut(s) 54, 195
BseXI GCAGC 1 cut(s) 34
BshFI GGCC 1 cut(s) 102
BshNI GGYRCC 2 cut(s) 4, 160
BsiSI CCGG 1 cut(s) 78
BsmAI GTCTC 1 cut(s) 194
BsnI GGCC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 144, 229
Bsp19I CCATGG 1 cut(s) 156
BspACI CCGC 1 cut(s) 103
BspANI GGCC 1 cut(s) 102
BspCNI CTCAG 2 cut(s) 53, 196
BspLI GGNNCC 3 cut(s) 6, 101, 162
BspT107I GGYRCC 2 cut(s) 4, 160
BssECI CCNNGG 2 cut(s) 109, 156
BssMI GATC 2 cut(s) 144, 229
BssT1I CCWWGG 1 cut(s) 156
Bst2UI CCWGG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 172
Bst6I CTCTTC 3 cut(s) 15, 125, 174
BstDEI CTNAG 2 cut(s) 40, 204
BstDSI CCRYGG 2 cut(s) 109, 156
BstF5I GGATG 1 cut(s) 196
BstKTI GATC 2 cut(s) 147, 232
BstMAI GTCTC 1 cut(s) 194
BstMBI GATC 2 cut(s) 144, 229
BstNI CCWGG 1 cut(s) 165
BstSCI CCNGG 1 cut(s) 163
BstV1I GCAGC 1 cut(s) 34
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 1 cut(s) 102
BtgI CCRYGG 2 cut(s) 109, 156
BtsCI GGATG 1 cut(s) 196
BtsIMutI CAGTG 1 cut(s) 177
CaiI CAGNNNCTG 1 cut(s) 47
Cfr13I GGNCC 1 cut(s) 100
CseI GACGC 1 cut(s) 183
CviAII CATG 1 cut(s) 157
CviJI RGCY 3 cut(s) 102, 213, 256
CviKI_1 RGCY 3 cut(s) 102, 213, 256
DdeI CTNAG 2 cut(s) 40, 204
DpnI GATC 2 cut(s) 146, 231
DpnII GATC 2 cut(s) 144, 229
Eam1104I CTCTTC 3 cut(s) 15, 125, 174
EarI CTCTTC 3 cut(s) 15, 125, 174
Eco130I CCWWGG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 163
EcoT14I CCWWGG 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 156
FaeI CATG 1 cut(s) 160
FaiI YATR 3 cut(s) 158, 259, 261
FatI CATG 1 cut(s) 156
Fnu4HI GCNGC 2 cut(s) 48, 103
FokI GGATG 1 cut(s) 203
Fsp4HI GCNGC 2 cut(s) 48, 103
FspBI CTAG 1 cut(s) 222
GluI GCNGC 2 cut(s) 48, 103
HaeIII GGCC 1 cut(s) 102
HapII CCGG 1 cut(s) 78
HgaI GACGC 1 cut(s) 183
Hin1II CATG 1 cut(s) 160
HinfI GANTC 1 cut(s) 152
HpaII CCGG 1 cut(s) 78
Hpy188I TCNGA 1 cut(s) 199
HpyAV CCTTC 1 cut(s) 203
HpyCH4III ACNGT 1 cut(s) 172
HpyF3I CTNAG 2 cut(s) 40, 204
Hsp92II CATG 1 cut(s) 160
Kzo9I GATC 2 cut(s) 144, 229
LpnPI CCDG 3 cut(s) 91, 150, 177
Lsp1109I GCAGC 1 cut(s) 34
LweI GCATC 1 cut(s) 181
MaeI CTAG 1 cut(s) 222
MalI GATC 2 cut(s) 146, 231
MboI GATC 2 cut(s) 144, 229
MboII GAAGA 4 cut(s) 139, 139, 142, 191
MflI RGATCY 1 cut(s) 144
MnlI CCTC 2 cut(s) 18, 199
MseI TTAA 2 cut(s) 63, 137
MspI CCGG 1 cut(s) 78
MspR9I CCNGG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 165
NcoI CCATGG 1 cut(s) 156
NdeII GATC 2 cut(s) 144, 229
NlaIII CATG 1 cut(s) 160
NlaIV GGNNCC 3 cut(s) 6, 101, 162
PfeI GAWTC 1 cut(s) 152
PkrI GCNGC 2 cut(s) 49, 104
Psp6I CCWGG 1 cut(s) 163
PspGI CCWGG 1 cut(s) 163
PspN4I GGNNCC 3 cut(s) 6, 101, 162
PspPI GGNCC 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 47
PsuI RGATCY 1 cut(s) 144
SaqAI TTAA 2 cut(s) 63, 137
SatI GCNGC 2 cut(s) 48, 103
Sau3AI GATC 2 cut(s) 144, 229
Sau96I GGNCC 1 cut(s) 100
ScrFI CCNGG 1 cut(s) 165
SfaNI GCATC 1 cut(s) 181
SgeI CNNG 9 cut(s) 90, 120, 122, 136, 169, 176, 177, 211, 234
SsiI CCGC 1 cut(s) 103
SspMI CTAG 1 cut(s) 222
StyD4I CCNGG 1 cut(s) 163
StyI CCWWGG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 172
TaqI TCGA 1 cut(s) 150
TauI GCSGC 1 cut(s) 105
TfiI GAWTC 1 cut(s) 152
Tru1I TTAA 2 cut(s) 63, 137
Tru9I TTAA 2 cut(s) 63, 137
TscAI CASTG 1 cut(s) 177
TseI GCWGC 1 cut(s) 47
TspRI CASTG 1 cut(s) 177
XspI CTAG 1 cut(s) 222
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.