FvH4_7g06200

54S ribosomal protein L51

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000172
Physical Location & Seq
Forward (+)
6330045 .. 6332468
2424 bp
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UTR
Exon/CDS
Intron
FvH4_7g06200.t2

Sequence Viewer

Length: 360 bp
ATGGCTTTGAGAGGTGTGTGGCAGCTGCAAAAACTTGTTGTGAGCTATTCTGATTGGGGAGGAAGCAGTAGGGGAATCAGGTCATTTATGGAGTCACATCTACCGGCCTTTAAGGAAAAGAATCCTCAACTAGAGGTGGTTATTGAACACATTCGTGGACAGCATCCTCATTTGAAGGGCTTATACAATAATCAAAATGAAAGGGTGGTATGTGTGAAGAATATGGATCCAGAAGAAGTTCTTCAGTGTGCAACAAGGCTAAGGAATTCACTGGGAAGAAAAGTGGTGAAACTGAGGACTAGACATGTAACCAAACATCCAAGCGTGCAAGGTACCTGGACGACAGACATCAAATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
L51_S25_CI-B8

Protein Analysis

120

Amino Acids

13.76

Weight (kDa)

10.08

Isoelectric Point (pI)

34.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
L51_S25_CI-B8 PF05047 31 - 82 2.9e-15 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 332
AccB1I GGYRCC 1 cut(s) 332
AclWI GGATC 2 cut(s) 221, 234
AcsI RAATTY 2 cut(s) 265, 353
AcuI CTGAAG 1 cut(s) 227
AfaI GTAC 1 cut(s) 334
AflIII ACRYGT 1 cut(s) 304
AgsI TTSAA 2 cut(s) 146, 175
AjnI CCWGG 1 cut(s) 335
AleI CACNNNNGTG 1 cut(s) 153
AluBI AGCT 2 cut(s) 25, 45
AluI AGCT 2 cut(s) 25, 45
AlwI GGATC 2 cut(s) 221, 234
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 22, 25
ApoI RAATTY 2 cut(s) 265, 353
Asp700I GAANNNNTTC 3 cut(s) 150, 237, 240
Asp718I GGTACC 1 cut(s) 332
AsuHPI GGTGA 1 cut(s) 298
BamHI GGATCC 1 cut(s) 226
BanI GGYRCC 1 cut(s) 332
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BbvI GCAGC 2 cut(s) 12, 34
BciT130I CCWGG 1 cut(s) 337
BfaI CTAG 2 cut(s) 131, 300
BisI GCNGC 2 cut(s) 23, 26
BlsI GCNGC 2 cut(s) 24, 27
Bme1390I CCNGG 1 cut(s) 337
BmiI GGNNCC 2 cut(s) 228, 334
BmrFI CCNGG 1 cut(s) 337
BmrI ACTGGG 1 cut(s) 281
BmsI GCATC 1 cut(s) 172
BmuI ACTGGG 1 cut(s) 281
Bpu10I CCTNAGC 1 cut(s) 260
Bse118I RCCGGY 1 cut(s) 103
Bse1I ACTGG 1 cut(s) 276
BseBI CCWGG 1 cut(s) 337
BseGI GGATG 2 cut(s) 163, 316
BseMII CTCAG 1 cut(s) 284
BseNI ACTGG 1 cut(s) 276
BseXI GCAGC 2 cut(s) 12, 34
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 332
BsiSI CCGG 1 cut(s) 104
BsnI GGCC 1 cut(s) 107
Bsp143I GATC 1 cut(s) 226
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 228, 334
BspPI GGATC 2 cut(s) 221, 234
BspT107I GGYRCC 1 cut(s) 332
BsrFI RCCGGY 1 cut(s) 103
BsrI ACTGG 1 cut(s) 276
BssAI RCCGGY 1 cut(s) 103
BssMI GATC 1 cut(s) 226
Bst2UI CCWGG 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 326
BstDEI CTNAG 2 cut(s) 260, 293
BstF5I GGATG 2 cut(s) 163, 316
BstKTI GATC 1 cut(s) 229
BstMBI GATC 1 cut(s) 226
BstNI CCWGG 1 cut(s) 337
BstNSI RCATGY 1 cut(s) 308
BstSCI CCNGG 1 cut(s) 335
BstV1I GCAGC 2 cut(s) 12, 34
BstX2I RGATCY 1 cut(s) 226
BstYI RGATCY 1 cut(s) 226
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 163, 316
BtsIMutI CAGTG 2 cut(s) 251, 269
Cac8I GCNNGC 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 103
Csp6I GTAC 1 cut(s) 333
CviAII CATG 1 cut(s) 305
CviJI RGCY 6 cut(s) 5, 25, 45, 107, 180, 259
CviKI_1 RGCY 6 cut(s) 5, 25, 45, 107, 180, 259
CviQI GTAC 1 cut(s) 333
DdeI CTNAG 2 cut(s) 260, 293
DpnI GATC 1 cut(s) 228
DpnII GATC 1 cut(s) 226
Eco57I CTGAAG 1 cut(s) 227
EcoRI GAATTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 335
FaeI CATG 1 cut(s) 308
FaiI YATR 5 cut(s) 89, 184, 211, 224, 306
FalI AAGNNNNNCTT 2 cut(s) 225, 257
FatI CATG 1 cut(s) 304
Fnu4HI GCNGC 2 cut(s) 23, 26
FokI GGATG 2 cut(s) 150, 303
Fsp4HI GCNGC 2 cut(s) 23, 26
FspBI CTAG 2 cut(s) 131, 300
GluI GCNGC 2 cut(s) 23, 26
HaeIII GGCC 1 cut(s) 107
HapII CCGG 1 cut(s) 104
Hin1II CATG 1 cut(s) 308
HinfI GANTC 3 cut(s) 75, 92, 121
HpaII CCGG 1 cut(s) 104
HphI GGTGA 1 cut(s) 298
Hpy166II GTNNAC 1 cut(s) 158
Hpy188I TCNGA 1 cut(s) 52
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 158
HpyAV CCTTC 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 28, 251, 328
HpyF3I CTNAG 2 cut(s) 260, 293
Hsp92II CATG 1 cut(s) 308
KpnI GGTACC 1 cut(s) 336
Kzo9I GATC 1 cut(s) 226
LpnPI CCDG 6 cut(s) 64, 117, 243, 257, 322, 349
Lsp1109I GCAGC 2 cut(s) 12, 34
LweI GCATC 1 cut(s) 172
MaeI CTAG 2 cut(s) 131, 300
MaeIII GTNAC 2 cut(s) 93, 307
MalI GATC 1 cut(s) 228
MboI GATC 1 cut(s) 226
MboII GAAGA 4 cut(s) 229, 233, 245, 288
MflI RGATCY 1 cut(s) 226
MluCI AATT 2 cut(s) 265, 353
MlyI GAGTC 1 cut(s) 101
MnlI CCTC 6 cut(s) 5, 53, 127, 135, 177, 288
MroXI GAANNNNTTC 3 cut(s) 150, 237, 240
MseI TTAA 1 cut(s) 111
MslI CAYNNNNRTG 1 cut(s) 153
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 1 cut(s) 104
MspR9I CCNGG 1 cut(s) 337
MvaI CCWGG 1 cut(s) 337
NdeII GATC 1 cut(s) 226
NlaIII CATG 1 cut(s) 308
NlaIV GGNNCC 2 cut(s) 228, 334
NmuCI GTSAC 1 cut(s) 93
NspI RCATGY 1 cut(s) 308
OliI CACNNNNGTG 1 cut(s) 153
PciI ACATGT 1 cut(s) 304
PdmI GAANNNNTTC 3 cut(s) 150, 237, 240
PfeI GAWTC 2 cut(s) 75, 121
PkrI GCNGC 2 cut(s) 24, 27
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PscI ACATGT 1 cut(s) 304
Psp6I CCWGG 1 cut(s) 335
PspGI CCWGG 1 cut(s) 335
PspN4I GGNNCC 2 cut(s) 228, 334
PsuI RGATCY 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 1 cut(s) 334
RsaNI GTAC 1 cut(s) 333
RseI CAYNNNNRTG 1 cut(s) 153
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 2 cut(s) 23, 26
Sau3AI GATC 1 cut(s) 226
SchI GAGTC 1 cut(s) 101
ScrFI CCNGG 1 cut(s) 337
SetI ASST 7 cut(s) 16, 27, 47, 83, 138, 334, 338
SfaNI GCATC 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 153
Sse9I AATT 2 cut(s) 265, 353
SspMI CTAG 2 cut(s) 131, 300
StyD4I CCNGG 1 cut(s) 335
TasI AATT 2 cut(s) 265, 353
TfiI GAWTC 2 cut(s) 75, 121
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 2 cut(s) 251, 276
TseFI GTSAC 1 cut(s) 93
TseI GCWGC 2 cut(s) 22, 25
Tsp45I GTSAC 1 cut(s) 93
TspDTI ATGAA 1 cut(s) 213
TspRI CASTG 2 cut(s) 251, 276
XapI RAATTY 2 cut(s) 265, 353
XceI RCATGY 1 cut(s) 308
XmnI GAANNNNTTC 3 cut(s) 150, 237, 240
XspI CTAG 2 cut(s) 131, 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.