Ribonuclease H protein
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| N_Asn_amidohyd | PF14736 | 53 - 342 | 1.1e-86 | Protein N-terminal asparagine amidohydrolase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 305 |
| AccB1I | GGYRCC | 2 cut(s) | 151, 901 |
| AccII | CGCG | 1 cut(s) | 993 |
| AclWI | GGATC | 5 cut(s) | 96, 212, 584, 597, 655 |
| AcyI | GRCGYC | 2 cut(s) | 69, 302 |
| AfaI | GTAC | 1 cut(s) | 118 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 100, 286, 293, 440 |
| AflIII | ACRYGT | 1 cut(s) | 991 |
| AgsI | TTSAA | 5 cut(s) | 124, 374, 422, 518, 790 |
| AhlI | ACTAGT | 1 cut(s) | 367 |
| AjiI | CACGTC | 1 cut(s) | 388 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 128, 160 |
| AluBI | AGCT | 4 cut(s) | 80, 503, 666, 797 |
| AluI | AGCT | 4 cut(s) | 80, 503, 666, 797 |
| Alw26I | GTCTC | 1 cut(s) | 350 |
| AlwI | GGATC | 5 cut(s) | 96, 212, 584, 597, 655 |
| Ama87I | CYCGRG | 1 cut(s) | 593 |
| AoxI | GGCC | 1 cut(s) | 126 |
| ApeKI | GCWGC | 3 cut(s) | 503, 804, 985 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 972 |
| AsuC2I | CCSGG | 3 cut(s) | 134, 287, 536 |
| AsuHPI | GGTGA | 3 cut(s) | 83, 423, 879 |
| AsuII | TTCGAA | 1 cut(s) | 553 |
| AvaI | CYCGRG | 1 cut(s) | 593 |
| AxyI | CCTNAGG | 1 cut(s) | 57 |
| BaeGI | GKGCMC | 1 cut(s) | 156 |
| BamHI | GGATCC | 1 cut(s) | 589 |
| BanI | GGYRCC | 2 cut(s) | 151, 901 |
| BarI | GAAGNNNNNNTAC | 1 cut(s) | 35 |
| BbvCI | CCTCAGC | 3 cut(s) | 51, 897, 1011 |
| BbvI | GCAGC | 3 cut(s) | 490, 791, 997 |
| BccI | CCATC | 8 cut(s) | 52, 57, 137, 174, 284, 349, 476, 735 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 543, 577, 584, 618 |
| BciVI | GTATCC | 1 cut(s) | 963 |
| BcnI | CCSGG | 3 cut(s) | 134, 287, 536 |
| BcoDI | GTCTC | 1 cut(s) | 350 |
| BcuI | ACTAGT | 1 cut(s) | 367 |
| BfaI | CTAG | 3 cut(s) | 368, 407, 456 |
| BfuI | GTATCC | 1 cut(s) | 963 |
| BisI | GCNGC | 3 cut(s) | 504, 805, 986 |
| BlsI | GCNGC | 3 cut(s) | 505, 806, 987 |
| Bme1390I | CCNGG | 3 cut(s) | 134, 287, 536 |
| BmeT110I | CYCGRG | 1 cut(s) | 593 |
| BmgBI | CACGTC | 1 cut(s) | 388 |
| BmiI | GGNNCC | 4 cut(s) | 153, 591, 812, 903 |
| BmrFI | CCNGG | 3 cut(s) | 134, 287, 536 |
| BmsI | GCATC | 2 cut(s) | 412, 731 |
| BpmI | CTGGAG | 3 cut(s) | 97, 721, 829 |
| Bpu10I | CCTNAGC | 3 cut(s) | 51, 897, 1011 |
| Bpu14I | TTCGAA | 1 cut(s) | 553 |
| BpuEI | CTTGAG | 1 cut(s) | 664 |
| BpuMI | CCSGG | 3 cut(s) | 134, 287, 536 |
| BsaBI | GATNNNNATC | 1 cut(s) | 402 |
| BsaHI | GRCGYC | 2 cut(s) | 69, 302 |
| BsaI | GGTCTC | 1 cut(s) | 350 |
| BsaJI | CCNNGG | 2 cut(s) | 594, 642 |
| BsaWI | WCCGGW | 1 cut(s) | 904 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 128, 158 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 100, 286, 293, 440 |
| Bse1I | ACTGG | 2 cut(s) | 114, 298 |
| Bse21I | CCTNAGG | 1 cut(s) | 57 |
| Bse8I | GATNNNNATC | 1 cut(s) | 402 |
| BseDI | CCNNGG | 2 cut(s) | 594, 642 |
| BseGI | GGATG | 5 cut(s) | 68, 129, 276, 403, 487 |
| BseJI | GATNNNNATC | 1 cut(s) | 402 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 100, 286, 293, 440 |
| BseMII | CTCAG | 4 cut(s) | 65, 71, 888, 1002 |
| BseNI | ACTGG | 2 cut(s) | 114, 298 |
| BseRI | GAGGAG | 1 cut(s) | 190 |
| BseSI | GKGCMC | 1 cut(s) | 156 |
| BseXI | GCAGC | 3 cut(s) | 490, 791, 997 |
| Bsh1236I | CGCG | 1 cut(s) | 993 |
| BshFI | GGCC | 1 cut(s) | 128 |
| BshNI | GGYRCC | 2 cut(s) | 151, 901 |
| BsiHKCI | CYCGRG | 1 cut(s) | 593 |
| BsiSI | CCGG | 4 cut(s) | 134, 287, 535, 905 |
| BslFI | GGGAC | 3 cut(s) | 80, 823, 950 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 100, 286, 293, 440 |
| BsmAI | GTCTC | 1 cut(s) | 350 |
| BsmFI | GGGAC | 3 cut(s) | 80, 823, 950 |
| BsmI | GAATGC | 1 cut(s) | 564 |
| BsnI | GGCC | 1 cut(s) | 128 |
| Bso31I | GGTCTC | 1 cut(s) | 350 |
| BsoBI | CYCGRG | 1 cut(s) | 593 |
| Bsp119I | TTCGAA | 1 cut(s) | 553 |
| Bsp1286I | GDGCHC | 1 cut(s) | 156 |
| Bsp143I | GATC | 7 cut(s) | 3, 88, 217, 458, 589, 647, 781 |
| BspANI | GGCC | 1 cut(s) | 128 |
| BspCNI | CTCAG | 4 cut(s) | 64, 70, 889, 1003 |
| BspFNI | CGCG | 1 cut(s) | 993 |
| BspLI | GGNNCC | 4 cut(s) | 153, 591, 812, 903 |
| BspPI | GGATC | 5 cut(s) | 96, 212, 584, 597, 655 |
| BspT104I | TTCGAA | 1 cut(s) | 553 |
| BspT107I | GGYRCC | 2 cut(s) | 151, 901 |
| BspTNI | GGTCTC | 1 cut(s) | 350 |
| BsrI | ACTGG | 2 cut(s) | 114, 298 |
| BssECI | CCNNGG | 2 cut(s) | 594, 642 |
| BssMI | GATC | 7 cut(s) | 3, 88, 217, 458, 589, 647, 781 |
| BssNI | GRCGYC | 2 cut(s) | 69, 302 |
| Bst4CI | ACNGT | 2 cut(s) | 214, 449 |
| Bst6I | CTCTTC | 1 cut(s) | 197 |
| BstACI | GRCGYC | 2 cut(s) | 69, 302 |
| BstBI | TTCGAA | 1 cut(s) | 553 |
| BstC8I | GCNNGC | 1 cut(s) | 664 |
| BstDEI | CTNAG | 5 cut(s) | 51, 57, 897, 923, 1011 |
| BstDSI | CCRYGG | 1 cut(s) | 642 |
| BstF5I | GGATG | 5 cut(s) | 68, 129, 276, 403, 487 |
| BstFNI | CGCG | 1 cut(s) | 993 |
| BstKTI | GATC | 7 cut(s) | 6, 91, 220, 461, 592, 650, 784 |
| BstMAI | GTCTC | 1 cut(s) | 350 |
| BstMBI | GATC | 7 cut(s) | 3, 88, 217, 458, 589, 647, 781 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 77, 810 |
| BstSCI | CCNGG | 3 cut(s) | 132, 285, 534 |
| BstSLI | GKGCMC | 1 cut(s) | 156 |
| BstUI | CGCG | 1 cut(s) | 993 |
| BstV1I | GCAGC | 3 cut(s) | 490, 791, 997 |
| BstX2I | RGATCY | 2 cut(s) | 589, 647 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 807 |
| BstYI | RGATCY | 2 cut(s) | 589, 647 |
| Bsu36I | CCTNAGG | 1 cut(s) | 57 |
| BsuI | GTATCC | 1 cut(s) | 963 |
| BsuRI | GGCC | 1 cut(s) | 128 |
| BtgI | CCRYGG | 1 cut(s) | 642 |
| BtgZI | GCGATG | 1 cut(s) | 30 |
| BtrI | CACGTC | 1 cut(s) | 388 |
| BtsCI | GGATG | 5 cut(s) | 68, 129, 276, 403, 487 |
| BtsIMutI | CAGTG | 1 cut(s) | 243 |
| Cac8I | GCNNGC | 1 cut(s) | 664 |
| CseI | GACGC | 1 cut(s) | 77 |
| Csp6I | GTAC | 1 cut(s) | 117 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 315, 350 |
| CviAII | CATG | 3 cut(s) | 440, 628, 801 |
| CviQI | GTAC | 1 cut(s) | 117 |
| DdeI | CTNAG | 5 cut(s) | 51, 57, 897, 923, 1011 |
| DpnI | GATC | 7 cut(s) | 5, 90, 219, 460, 591, 649, 783 |
| DpnII | GATC | 7 cut(s) | 3, 88, 217, 458, 589, 647, 781 |
| Eam1104I | CTCTTC | 1 cut(s) | 197 |
| EarI | CTCTTC | 1 cut(s) | 197 |
| Eco31I | GGTCTC | 1 cut(s) | 350 |
| Eco81I | CCTNAGG | 1 cut(s) | 57 |
| Eco88I | CYCGRG | 1 cut(s) | 593 |
| EcoT22I | ATGCAT | 2 cut(s) | 566, 607 |
| FaeI | CATG | 3 cut(s) | 443, 631, 804 |
| FaqI | GGGAC | 3 cut(s) | 80, 823, 950 |
| FatI | CATG | 3 cut(s) | 439, 627, 800 |
| FauNDI | CATATG | 1 cut(s) | 766 |
| Fnu4HI | GCNGC | 3 cut(s) | 504, 805, 986 |
| FokI | GGATG | 5 cut(s) | 75, 116, 263, 410, 494 |
| Fsp4HI | GCNGC | 3 cut(s) | 504, 805, 986 |
| FspBI | CTAG | 3 cut(s) | 368, 407, 456 |
| GluI | GCNGC | 3 cut(s) | 504, 805, 986 |
| GsuI | CTGGAG | 3 cut(s) | 97, 721, 829 |
| HaeIII | GGCC | 1 cut(s) | 128 |
| HapII | CCGG | 4 cut(s) | 134, 287, 535, 905 |
| HgaI | GACGC | 1 cut(s) | 77 |
| Hin1I | GRCGYC | 2 cut(s) | 69, 302 |
| Hin1II | CATG | 3 cut(s) | 443, 631, 804 |
| HindIII | AAGCTT | 1 cut(s) | 78 |
| HinfI | GANTC | 7 cut(s) | 35, 104, 161, 167, 320, 734, 857 |
| HpaII | CCGG | 4 cut(s) | 134, 287, 535, 905 |
| HphI | GGTGA | 3 cut(s) | 83, 423, 879 |
| Hpy166II | GTNNAC | 2 cut(s) | 17, 391 |
| Hpy188I | TCNGA | 6 cut(s) | 34, 166, 172, 856, 862, 1002 |
| Hpy188III | TCNNGA | 7 cut(s) | 462, 593, 681, 689, 703, 738, 956 |
| Hpy8I | GTNNAC | 2 cut(s) | 17, 391 |
| Hpy99I | CGWCG | 2 cut(s) | 233, 307 |
| HpyAV | CCTTC | 4 cut(s) | 39, 579, 744, 921 |
| HpyCH4III | ACNGT | 2 cut(s) | 214, 449 |
| HpyCH4IV | ACGT | 3 cut(s) | 228, 302, 387 |
| HpyCH4V | TGCA | 8 cut(s) | 209, 224, 403, 528, 564, 605, 722, 826 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 77, 810 |
| HpyF3I | CTNAG | 5 cut(s) | 51, 57, 897, 923, 1011 |
| HpySE526I | ACGT | 3 cut(s) | 228, 302, 387 |
| Hsp92I | GRCGYC | 2 cut(s) | 69, 302 |
| Hsp92II | CATG | 3 cut(s) | 443, 631, 804 |
| Kzo9I | GATC | 7 cut(s) | 3, 88, 217, 458, 589, 647, 781 |
| LmnI | GCTCC | 3 cut(s) | 802, 810, 982 |
| Lsp1109I | GCAGC | 3 cut(s) | 490, 791, 997 |
| LweI | GCATC | 2 cut(s) | 412, 731 |
| MaeI | CTAG | 3 cut(s) | 368, 407, 456 |
| MaeII | ACGT | 3 cut(s) | 228, 302, 387 |
| MaeIII | GTNAC | 3 cut(s) | 281, 360, 443 |
| MalI | GATC | 7 cut(s) | 5, 90, 219, 460, 591, 649, 783 |
| MboI | GATC | 7 cut(s) | 3, 88, 217, 458, 589, 647, 781 |
| MboII | GAAGA | 3 cut(s) | 184, 434, 560 |
| MflI | RGATCY | 2 cut(s) | 589, 647 |
| MhlI | GDGCHC | 1 cut(s) | 156 |
| MluCI | AATT | 5 cut(s) | 510, 612, 696, 708, 847 |
| MluI | ACGCGT | 1 cut(s) | 991 |
| MlyI | GAGTC | 2 cut(s) | 314, 728 |
| MmeI | TCCRAC | 2 cut(s) | 66, 459 |
| Mph1103I | ATGCAT | 2 cut(s) | 566, 607 |
| MroXI | GAANNNNTTC | 1 cut(s) | 972 |
| MseI | TTAA | 1 cut(s) | 618 |
| MspI | CCGG | 4 cut(s) | 134, 287, 535, 905 |
| MspR9I | CCNGG | 3 cut(s) | 134, 287, 536 |
| Mva1269I | GAATGC | 1 cut(s) | 564 |
| MvnI | CGCG | 1 cut(s) | 993 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 77, 810 |
| NciI | CCSGG | 3 cut(s) | 134, 287, 536 |
| NdeI | CATATG | 1 cut(s) | 766 |
| NdeII | GATC | 7 cut(s) | 3, 88, 217, 458, 589, 647, 781 |
| NlaIII | CATG | 3 cut(s) | 443, 631, 804 |
| NlaIV | GGNNCC | 4 cut(s) | 153, 591, 812, 903 |
| NmuCI | GTSAC | 1 cut(s) | 360 |
| NsiI | ATGCAT | 2 cut(s) | 566, 607 |
| NspV | TTCGAA | 1 cut(s) | 553 |
| PctI | GAATGC | 1 cut(s) | 564 |
| PdmI | GAANNNNTTC | 1 cut(s) | 972 |
| PfeI | GAWTC | 5 cut(s) | 35, 104, 161, 167, 857 |
| PfoI | TCCNGGA | 1 cut(s) | 132 |
| PkrI | GCNGC | 3 cut(s) | 505, 806, 987 |
| PleI | GAGTC | 2 cut(s) | 314, 728 |
| PpsI | GAGTC | 2 cut(s) | 314, 728 |
| PspN4I | GGNNCC | 4 cut(s) | 153, 591, 812, 903 |
| PsuI | RGATCY | 2 cut(s) | 589, 647 |
| RsaI | GTAC | 1 cut(s) | 118 |
| RsaNI | GTAC | 1 cut(s) | 117 |
| SaqAI | TTAA | 1 cut(s) | 618 |
| SatI | GCNGC | 3 cut(s) | 504, 805, 986 |
| Sau3AI | GATC | 7 cut(s) | 3, 88, 217, 458, 589, 647, 781 |
| SchI | GAGTC | 2 cut(s) | 314, 728 |
| ScrFI | CCNGG | 3 cut(s) | 134, 287, 536 |
| SduI | GDGCHC | 1 cut(s) | 156 |
| SfaNI | GCATC | 2 cut(s) | 412, 731 |
| SfuI | TTCGAA | 1 cut(s) | 553 |
| SmlI | CTYRAG | 1 cut(s) | 679 |
| SmoI | CTYRAG | 1 cut(s) | 679 |
| SpeI | ACTAGT | 1 cut(s) | 367 |
| Sse9I | AATT | 5 cut(s) | 510, 612, 696, 708, 847 |
| SspMI | CTAG | 3 cut(s) | 368, 407, 456 |
| StyD4I | CCNGG | 3 cut(s) | 132, 285, 534 |
| TaaI | ACNGT | 2 cut(s) | 214, 449 |
| TaiI | ACGT | 3 cut(s) | 231, 305, 390 |
| TaqI | TCGA | 2 cut(s) | 231, 553 |
| TasI | AATT | 5 cut(s) | 510, 612, 696, 708, 847 |
| TatI | WGTACW | 1 cut(s) | 116 |
| TfiI | GAWTC | 5 cut(s) | 35, 104, 161, 167, 857 |
| Tru1I | TTAA | 1 cut(s) | 618 |
| Tru9I | TTAA | 1 cut(s) | 618 |
| TscAI | CASTG | 1 cut(s) | 250 |
| TseFI | GTSAC | 1 cut(s) | 360 |
| TseI | GCWGC | 3 cut(s) | 503, 804, 985 |
| Tsp45I | GTSAC | 1 cut(s) | 360 |
| TspDTI | ATGAA | 4 cut(s) | 264, 616, 708, 783 |
| TspGWI | ACGGA | 1 cut(s) | 269 |
| TspRI | CASTG | 1 cut(s) | 250 |
| XmnI | GAANNNNTTC | 1 cut(s) | 972 |
| XspI | CTAG | 3 cut(s) | 368, 407, 456 |
| ZraI | GACGTC | 1 cut(s) | 303 |
| Zsp2I | ATGCAT | 2 cut(s) | 566, 607 |