Rmu_sc0005497.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005497.1
OG0000172
Physical Location & Seq
Reverse (-)
13060 .. 14291
1232 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005497.1_g000003.1.cds

Sequence Viewer

Length: 1086 bp
atggctgctgctattgcatccatgacggccaggctagcgaccaaactgtcgctcagagaaggagaagaaccagtggacttggggaatctcagggttccggggaaggaatttttggctcgcaacttttacttggtgggcagattgaacacttgtagggcagtggtgatggagtctttcaggagtgctgtgcggtcgatgtggaggttgtcagggacagtggaggtccaaccacggggtgaacggtttctgtttacgttcactcatgaaagggatgttgctcgtgtgaagaagggtgagatctctgcattgaagctggattttgtttggatatgggttacactgcagggcatccctccgggtattttgactgaacctaccgtccggttggttggggggacaattggagaggttccggaggtggaccggttggcgctacgcaggagtgaagctcgtgtccggcttgttctctccatcaacgatccggtaaggctggatcgtagggttagggtttctcctattgacgtcctaatcattcgttttaagtatgaaaggctcctaggtcggtgtcactcttgttctctgctcaatcatggcgggcagcgatgccctagggaggaggaatcggagactgatactgtggtggagacaagggttcctagcatgatgaagaagaaatccgtgcatattcgatcgcttccggaacttgttacgagctctgggactgagggcacttctgcttctacaccggtggtaggggtacgtcgtcccagggaggaggaggcttcagaggaaggcaaacgcgtaaaacatagcttggatcttgttccggctaacctgcagccagaaaatctgggtttcgaactttctccagaaggtctggttgaagtgacggtgactcaggctcccaaggtctacaagaagaagggtaggcctcggggacagcgcaacaaggtaaaaactttgaaggcagcgtccatttgtggtggttctgtggccatgatgtcagggtctgttgcagaaggggttgatggtatacatggggtgcaggatgggcaggattcagtgcctatttcccagtctgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

361

Amino Acids

39.75

Weight (kDa)

9.67

Isoelectric Point (pI)

48.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AatII GACGTC 1 cut(s) 525
Acc36I ACCTGC 1 cut(s) 843
AccI GTMKAC 2 cut(s) 912, 1033
AccII CGCG 1 cut(s) 801
AccIII TCCGGA 2 cut(s) 412, 697
AciI CCGC 2 cut(s) 190, 594
AclWI GGATC 3 cut(s) 473, 501, 825
AcoI YGGCCR 2 cut(s) 27, 993
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 768
AcyI GRCGYC 1 cut(s) 522
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 1 cut(s) 759
AfiI CCNNNNNNNGG 4 cut(s) 232, 613, 752, 1080
AflIII ACRYGT 1 cut(s) 799
AgeI ACCGGT 2 cut(s) 423, 745
AgsI TTSAA 4 cut(s) 145, 310, 884, 964
AjnI CCWGG 2 cut(s) 29, 767
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AloI GAACNNNNNNTCC 2 cut(s) 363, 395
AluBI AGCT 4 cut(s) 313, 449, 714, 813
AluI AGCT 4 cut(s) 313, 449, 714, 813
Alw21I GWGCWC 1 cut(s) 716
Alw26I GTCTC 2 cut(s) 620, 638
AlwI GGATC 3 cut(s) 473, 501, 825
AlwNI CAGNNNCTG 1 cut(s) 1010
Ama87I CYCGRG 1 cut(s) 933
Aor13HI TCCGGA 2 cut(s) 412, 697
AoxI GGCC 3 cut(s) 27, 929, 993
ApeKI GCWGC 5 cut(s) 5, 8, 598, 838, 968
ApoI RAATTY 1 cut(s) 107
AsiGI ACCGGT 2 cut(s) 423, 745
Asp700I GAANNNNTTC 1 cut(s) 243
AspA2I CCTAGG 2 cut(s) 556, 608
AspLEI GCGC 2 cut(s) 433, 945
AspS9I GGNCC 2 cut(s) 223, 421
AsuC2I CCSGG 2 cut(s) 99, 357
AsuHPI GGTGA 4 cut(s) 175, 248, 305, 904
AsuII TTCGAA 1 cut(s) 858
AsuNHI GCTAGC 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 933
AvaII GGWCC 2 cut(s) 223, 421
AvrII CCTAGG 2 cut(s) 556, 608
BaeGI GKGCMC 1 cut(s) 731
BaeI ACNNNNGTAYC 2 cut(s) 624, 657
BalI TGGCCA 1 cut(s) 995
BanII GRGCYC 1 cut(s) 716
BauI CACGAG 2 cut(s) 279, 450
Bbv12I GWGCWC 1 cut(s) 716
BbvI GCAGC 3 cut(s) 610, 850, 980
BccI CCATC 4 cut(s) 160, 479, 1022, 1043
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 2 cut(s) 31, 769
BcnI CCSGG 2 cut(s) 99, 357
BcoDI GTCTC 2 cut(s) 620, 638
BfaI CTAG 4 cut(s) 35, 557, 609, 657
BfmI CTRYAG 2 cut(s) 341, 836
BfoI RGCGCY 1 cut(s) 434
BfuAI ACCTGC 1 cut(s) 843
BglII AGATCT 1 cut(s) 297
BisI GCNGC 5 cut(s) 6, 9, 599, 839, 969
BlnI CCTAGG 2 cut(s) 556, 608
BlsI GCNGC 5 cut(s) 7, 10, 600, 840, 970
Bme1390I CCNGG 4 cut(s) 31, 99, 357, 769
Bme18I GGWCC 2 cut(s) 223, 421
BmeT110I CYCGRG 1 cut(s) 933
BmgT120I GGNCC 2 cut(s) 223, 421
BmiI GGNNCC 5 cut(s) 96, 411, 554, 654, 903
BmrFI CCNGG 4 cut(s) 31, 99, 357, 769
BmrI ACTGGG 1 cut(s) 1069
BmsI GCATC 3 cut(s) 26, 357, 593
BmtI GCTAGC 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 1069
BplI GAGNNNNNCTC 2 cut(s) 433, 465
BpmI CTGGAG 1 cut(s) 852
Bpu14I TTCGAA 1 cut(s) 858
BpuMI CCSGG 2 cut(s) 99, 357
BsaHI GRCGYC 1 cut(s) 522
BsaJI CCNNGG 8 cut(s) 98, 230, 556, 608, 767, 768, 906, 932
BsaWI WCCGGW 6 cut(s) 381, 412, 423, 481, 697, 745
BsaXI ACNNNNNCTCC 2 cut(s) 886, 916
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 613, 752, 1080
Bse118I RCCGGY 2 cut(s) 423, 745
Bse1I ACTGG 2 cut(s) 71, 1075
BseAI TCCGGA 2 cut(s) 412, 697
BseBI CCWGG 2 cut(s) 31, 769
BseDI CCNNGG 8 cut(s) 98, 230, 556, 608, 767, 768, 906, 932
BseGI GGATG 4 cut(s) 17, 277, 348, 1054
BseLI CCNNNNNNNGG 4 cut(s) 232, 613, 752, 1080
BseMII CTCAG 4 cut(s) 67, 103, 714, 911
BseNI ACTGG 2 cut(s) 71, 1075
BseRI GAGGAG 3 cut(s) 629, 788, 791
BseSI GKGCMC 1 cut(s) 731
BseXI GCAGC 3 cut(s) 610, 850, 980
BsgI GTGCAG 1 cut(s) 1064
Bsh1236I CGCG 1 cut(s) 801
Bsh1285I CGRYCG 2 cut(s) 194, 692
BshFI GGCC 3 cut(s) 29, 931, 995
BshTI ACCGGT 2 cut(s) 423, 745
BsiEI CGRYCG 2 cut(s) 194, 692
BsiHKAI GWGCWC 1 cut(s) 716
BsiHKCI CYCGRG 1 cut(s) 933
BslFI GGGAC 5 cut(s) 226, 409, 733, 750, 951
BslI CCNNNNNNNGG 4 cut(s) 232, 613, 752, 1080
BsmAI GTCTC 2 cut(s) 620, 638
BsmFI GGGAC 5 cut(s) 226, 409, 733, 750, 951
BsnI GGCC 3 cut(s) 29, 931, 995
BsoBI CYCGRG 1 cut(s) 933
Bsp119I TTCGAA 1 cut(s) 858
Bsp1286I GDGCHC 2 cut(s) 716, 731
Bsp13I TCCGGA 2 cut(s) 412, 697
Bsp143I GATC 5 cut(s) 297, 478, 493, 689, 817
BspACI CCGC 2 cut(s) 190, 594
BspANI GGCC 3 cut(s) 29, 931, 995
BspCNI CTCAG 4 cut(s) 66, 102, 715, 910
BspEI TCCGGA 2 cut(s) 412, 697
BspFNI CGCG 1 cut(s) 801
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 5 cut(s) 96, 411, 554, 654, 903
BspMAI CTGCAG 2 cut(s) 345, 840
BspMI ACCTGC 1 cut(s) 843
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 3 cut(s) 473, 501, 825
BspT104I TTCGAA 1 cut(s) 858
BsrFI RCCGGY 2 cut(s) 423, 745
BsrI ACTGG 2 cut(s) 71, 1075
BssAI RCCGGY 2 cut(s) 423, 745
BssECI CCNNGG 8 cut(s) 98, 230, 556, 608, 767, 768, 906, 932
BssMI GATC 5 cut(s) 297, 478, 493, 689, 817
BssNAI GTATAC 1 cut(s) 1034
BssNI GRCGYC 1 cut(s) 522
BssSI CACGAG 2 cut(s) 279, 450
BssT1I CCWWGG 3 cut(s) 556, 608, 906
Bst1107I GTATAC 1 cut(s) 1034
Bst2BI CACGAG 2 cut(s) 279, 450
Bst2UI CCWGG 2 cut(s) 31, 769
Bst4CI ACNGT 6 cut(s) 48, 217, 243, 379, 637, 892
BstACI GRCGYC 1 cut(s) 522
BstBI TTCGAA 1 cut(s) 858
BstC8I GCNNGC 3 cut(s) 36, 118, 596
BstDEI CTNAG 4 cut(s) 53, 89, 723, 897
BstDSI CCRYGG 1 cut(s) 230
BstF5I GGATG 4 cut(s) 17, 277, 348, 1054
BstFNI CGCG 1 cut(s) 801
BstH2I RGCGCY 1 cut(s) 434
BstHHI GCGC 2 cut(s) 433, 945
BstKTI GATC 5 cut(s) 300, 481, 496, 692, 820
BstMAI GTCTC 2 cut(s) 620, 638
BstMBI GATC 5 cut(s) 297, 478, 493, 689, 817
BstMCI CGRYCG 2 cut(s) 194, 692
BstMWI GCNNNNNNNGC 3 cut(s) 14, 35, 1051
BstNI CCWGG 2 cut(s) 31, 769
BstSCI CCNGG 4 cut(s) 29, 97, 355, 767
BstSFI CTRYAG 2 cut(s) 341, 836
BstSLI GKGCMC 1 cut(s) 731
BstUI CGCG 1 cut(s) 801
BstV1I GCAGC 3 cut(s) 610, 850, 980
BstX2I RGATCY 2 cut(s) 297, 817
BstYI RGATCY 2 cut(s) 297, 817
BstZ17I GTATAC 1 cut(s) 1034
BsuRI GGCC 3 cut(s) 29, 931, 995
BtgI CCRYGG 1 cut(s) 230
BtgZI GCGATG 1 cut(s) 616
BtsCI GGATG 4 cut(s) 17, 277, 348, 1054
BtsI GCAGTG 2 cut(s) 165, 338
BtsIMutI CAGTG 5 cut(s) 78, 165, 222, 338, 1068
BveI ACCTGC 1 cut(s) 843
Cac8I GCNNGC 3 cut(s) 36, 118, 596
CaiI CAGNNNCTG 1 cut(s) 1010
CciI TCATGA 1 cut(s) 262
CfoI GCGC 2 cut(s) 433, 945
Cfr10I RCCGGY 2 cut(s) 423, 745
Cfr13I GGNCC 2 cut(s) 223, 421
CseI GACGC 1 cut(s) 960
Csp6I GTAC 1 cut(s) 758
CspAI ACCGGT 2 cut(s) 423, 745
CviAII CATG 6 cut(s) 22, 263, 590, 661, 997, 1037
CviQI GTAC 1 cut(s) 758
DdeI CTNAG 4 cut(s) 53, 89, 723, 897
DpnI GATC 5 cut(s) 299, 480, 495, 691, 819
DpnII GATC 5 cut(s) 297, 478, 493, 689, 817
DraIII CACNNNGTG 1 cut(s) 236
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 27, 993
Ecl136II GAGCTC 1 cut(s) 714
Eco130I CCWWGG 3 cut(s) 556, 608, 906
Eco147I AGGCCT 1 cut(s) 931
Eco24I GRGCYC 1 cut(s) 716
Eco47I GGWCC 2 cut(s) 223, 421
Eco53kI GAGCTC 1 cut(s) 714
Eco57I CTGAAG 1 cut(s) 768
Eco88I CYCGRG 1 cut(s) 933
EcoICRI GAGCTC 1 cut(s) 714
EcoRII CCWGG 2 cut(s) 29, 767
EcoT14I CCWWGG 3 cut(s) 556, 608, 906
EcoT38I GRGCYC 1 cut(s) 716
ErhI CCWWGG 3 cut(s) 556, 608, 906
FaeI CATG 6 cut(s) 25, 266, 593, 664, 1000, 1040
FaqI GGGAC 5 cut(s) 226, 409, 733, 750, 951
FatI CATG 6 cut(s) 21, 262, 589, 660, 996, 1036
FauI CCCGC 1 cut(s) 587
FblI GTMKAC 2 cut(s) 912, 1033
Fnu4HI GCNGC 5 cut(s) 6, 9, 599, 839, 969
FokI GGATG 4 cut(s) 4, 284, 335, 1061
FriOI GRGCYC 1 cut(s) 716
Fsp4HI GCNGC 5 cut(s) 6, 9, 599, 839, 969
FspBI CTAG 4 cut(s) 35, 557, 609, 657
GlaI GCGC 2 cut(s) 432, 944
GluI GCNGC 5 cut(s) 6, 9, 599, 839, 969
GsuI CTGGAG 1 cut(s) 852
HaeII RGCGCY 1 cut(s) 434
HaeIII GGCC 3 cut(s) 29, 931, 995
HgaI GACGC 1 cut(s) 960
HhaI GCGC 2 cut(s) 433, 945
Hin1I GRCGYC 1 cut(s) 522
Hin1II CATG 6 cut(s) 25, 266, 593, 664, 1000, 1040
Hin6I GCGC 2 cut(s) 431, 943
HinP1I GCGC 2 cut(s) 431, 943
HinfI GANTC 5 cut(s) 85, 170, 620, 895, 1058
HphI GGTGA 4 cut(s) 175, 248, 305, 904
Hpy166II GTNNAC 7 cut(s) 76, 239, 252, 258, 421, 913, 1034
Hpy188I TCNGA 3 cut(s) 56, 625, 787
Hpy188III TCNNGA 5 cut(s) 178, 263, 413, 698, 869
Hpy8I GTNNAC 7 cut(s) 76, 239, 252, 258, 421, 913, 1034
Hpy99I CGWCG 1 cut(s) 765
HpyAV CCTTC 8 cut(s) 53, 97, 283, 785, 866, 916, 958, 1013
HpyCH4III ACNGT 6 cut(s) 48, 217, 243, 379, 637, 892
HpyCH4IV ACGT 3 cut(s) 254, 522, 760
HpyCH4V TGCA 7 cut(s) 17, 305, 343, 682, 838, 1016, 1045
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 35, 1051
HpyF3I CTNAG 4 cut(s) 53, 89, 723, 897
HpySE526I ACGT 3 cut(s) 254, 522, 760
Hsp92I GRCGYC 1 cut(s) 522
Hsp92II CATG 6 cut(s) 25, 266, 593, 664, 1000, 1040
HspAI GCGC 2 cut(s) 431, 943
Kpn2I TCCGGA 2 cut(s) 412, 697
Kzo9I GATC 5 cut(s) 297, 478, 493, 689, 817
LmnI GCTCC 2 cut(s) 558, 907
Lsp1109I GCAGC 3 cut(s) 610, 850, 980
LweI GCATC 3 cut(s) 26, 357, 593
MaeI CTAG 4 cut(s) 35, 557, 609, 657
MaeII ACGT 3 cut(s) 254, 522, 760
MaeIII GTNAC 5 cut(s) 334, 566, 706, 886, 892
MalI GATC 5 cut(s) 299, 480, 495, 691, 819
MboI GATC 5 cut(s) 297, 478, 493, 689, 817
MboII GAAGA 5 cut(s) 77, 298, 679, 682, 931
MfeI CAATTG 1 cut(s) 399
MflI RGATCY 2 cut(s) 297, 817
MhlI GDGCHC 2 cut(s) 716, 731
MlsI TGGCCA 1 cut(s) 995
MluCI AATT 2 cut(s) 107, 399
MluI ACGCGT 1 cut(s) 799
MluNI TGGCCA 1 cut(s) 995
MlyI GAGTC 2 cut(s) 179, 889
MmeI TCCRAC 1 cut(s) 250
Mox20I TGGCCA 1 cut(s) 995
MroI TCCGGA 2 cut(s) 412, 697
MroXI GAANNNNTTC 1 cut(s) 243
MscI TGGCCA 1 cut(s) 995
MseI TTAA 1 cut(s) 540
Msp20I TGGCCA 1 cut(s) 995
MspR9I CCNGG 4 cut(s) 31, 99, 357, 769
MunI CAATTG 1 cut(s) 399
MvaI CCWGG 2 cut(s) 31, 769
MvnI CGCG 1 cut(s) 801
MwoI GCNNNNNNNGC 3 cut(s) 14, 35, 1051
NciI CCSGG 2 cut(s) 99, 357
NdeII GATC 5 cut(s) 297, 478, 493, 689, 817
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 6 cut(s) 25, 266, 593, 664, 1000, 1040
NlaIV GGNNCC 5 cut(s) 96, 411, 554, 654, 903
NmuCI GTSAC 3 cut(s) 566, 886, 892
NspV TTCGAA 1 cut(s) 858
PagI TCATGA 1 cut(s) 262
PasI CCCWGGG 1 cut(s) 768
PceI AGGCCT 1 cut(s) 931
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 3 cut(s) 85, 620, 1058
PinAI ACCGGT 2 cut(s) 423, 745
PkrI GCNGC 5 cut(s) 7, 10, 600, 840, 970
Ple19I CGATCG 1 cut(s) 692
PleI GAGTC 2 cut(s) 178, 889
PpsI GAGTC 2 cut(s) 178, 889
Psp124BI GAGCTC 1 cut(s) 716
Psp6I CCWGG 2 cut(s) 29, 767
PspGI CCWGG 2 cut(s) 29, 767
PspN4I GGNNCC 5 cut(s) 96, 411, 554, 654, 903
PspPI GGNCC 2 cut(s) 223, 421
PstI CTGCAG 2 cut(s) 345, 840
PstNI CAGNNNCTG 1 cut(s) 1010
PsuI RGATCY 2 cut(s) 297, 817
PvuI CGATCG 1 cut(s) 692
RsaI GTAC 1 cut(s) 759
RsaNI GTAC 1 cut(s) 758
SacI GAGCTC 1 cut(s) 716
SaqAI TTAA 1 cut(s) 540
SatI GCNGC 5 cut(s) 6, 9, 599, 839, 969
Sau3AI GATC 5 cut(s) 297, 478, 493, 689, 817
Sau96I GGNCC 2 cut(s) 223, 421
SchI GAGTC 2 cut(s) 179, 889
ScrFI CCNGG 4 cut(s) 31, 99, 357, 769
SduI GDGCHC 2 cut(s) 716, 731
SfaNI GCATC 3 cut(s) 26, 357, 593
SfcI CTRYAG 2 cut(s) 341, 836
SfuI TTCGAA 1 cut(s) 858
SgrAI CRCCGGYG 1 cut(s) 745
SinI GGWCC 2 cut(s) 223, 421
Sse9I AATT 2 cut(s) 107, 399
SseBI AGGCCT 1 cut(s) 931
SsiI CCGC 2 cut(s) 190, 594
SspMI CTAG 4 cut(s) 35, 557, 609, 657
SstI GAGCTC 1 cut(s) 716
StuI AGGCCT 1 cut(s) 931
StyD4I CCNGG 4 cut(s) 29, 97, 355, 767
StyI CCWWGG 3 cut(s) 556, 608, 906
TaaI ACNGT 6 cut(s) 48, 217, 243, 379, 637, 892
TaiI ACGT 3 cut(s) 257, 525, 763
TaqI TCGA 3 cut(s) 194, 688, 858
TasI AATT 2 cut(s) 107, 399
TfiI GAWTC 3 cut(s) 85, 620, 1058
Tru1I TTAA 1 cut(s) 540
Tru9I TTAA 1 cut(s) 540
TscAI CASTG 5 cut(s) 78, 165, 222, 345, 1068
TseFI GTSAC 3 cut(s) 566, 886, 892
TseI GCWGC 5 cut(s) 5, 8, 598, 838, 968
Tsp45I GTSAC 3 cut(s) 566, 886, 892
TspDTI ATGAA 3 cut(s) 279, 561, 680
TspGWI ACGGA 1 cut(s) 667
TspRI CASTG 5 cut(s) 78, 165, 222, 345, 1068
VpaK11BI GGWCC 2 cut(s) 223, 421
XapI RAATTY 1 cut(s) 107
XmaJI CCTAGG 2 cut(s) 556, 608
XmiI GTMKAC 2 cut(s) 912, 1033
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 4 cut(s) 35, 557, 609, 657
ZraI GACGTC 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.