Rroxscaffold_1G00048570

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000172
Physical Location & Seq
Reverse (-)
68637565 .. 68638228
664 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00048570.1

Sequence Viewer

Length: 255 bp
ATGGATGCATCGATTTGGTTTTTGGGTGAACTCATTTCGGGTTTGCTTAGTTTCCAGTTTGGGACTCATGGGTGGTTAGAAGTGCTCCGTTGTCGGCATCCACGACCGGCAACAACATGTCTAGAGAAGCTGGTTCGGGCGGCGGTGCCTGGAATGTGTGGGCTGCCGTACGAAGGAATGGGCCGCGACCGAGTTGGGTCAGCCTATTGGACTTTGAGCCCACCGTTCTTTGGGCTATTCTCTCGACTTGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.33

Weight (kDa)

8.63

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 145
AccII CGCG 1 cut(s) 186
AciI CCGC 3 cut(s) 140, 143, 184
AfaI GTAC 1 cut(s) 170
AfiI CCNNNNNNNGG 2 cut(s) 173, 230
AflIII ACRYGT 1 cut(s) 116
AjnI CCWGG 1 cut(s) 148
AluBI AGCT 1 cut(s) 130
AluI AGCT 1 cut(s) 130
Alw21I GWGCWC 1 cut(s) 87
AoxI GGCC 1 cut(s) 181
ApeKI GCWGC 1 cut(s) 163
AspS9I GGNCC 1 cut(s) 181
AsuHPI GGTGA 1 cut(s) 38
BanI GGYRCC 1 cut(s) 145
BanII GRGCYC 1 cut(s) 221
Bbv12I GWGCWC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 150
BceAI ACGGC 1 cut(s) 151
BciT130I CCWGG 1 cut(s) 150
BfaI CTAG 1 cut(s) 122
BisI GCNGC 3 cut(s) 141, 164, 184
BlsI GCNGC 3 cut(s) 142, 165, 185
Bme1390I CCNGG 1 cut(s) 150
BmgT120I GGNCC 1 cut(s) 181
BmiI GGNNCC 1 cut(s) 147
BmrFI CCNGG 1 cut(s) 150
BmsI GCATC 2 cut(s) 17, 106
Bsa29I ATCGAT 1 cut(s) 11
Bsc4I CCNNNNNNNGG 2 cut(s) 173, 230
Bse118I RCCGGY 1 cut(s) 106
Bse1I ACTGG 1 cut(s) 55
BseBI CCWGG 1 cut(s) 150
BseCI ATCGAT 1 cut(s) 11
BseGI GGATG 2 cut(s) 10, 97
BseLI CCNNNNNNNGG 2 cut(s) 173, 230
BseNI ACTGG 1 cut(s) 55
BseXI GCAGC 1 cut(s) 150
Bsh1236I CGCG 1 cut(s) 186
Bsh1285I CGRYCG 2 cut(s) 107, 190
BshFI GGCC 1 cut(s) 183
BshNI GGYRCC 1 cut(s) 145
BshVI ATCGAT 1 cut(s) 11
BsiEI CGRYCG 2 cut(s) 107, 190
BsiHKAI GWGCWC 1 cut(s) 87
BsiSI CCGG 1 cut(s) 107
BsiWI CGTACG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 76
BslI CCNNNNNNNGG 2 cut(s) 173, 230
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 87, 221
BspACI CCGC 3 cut(s) 140, 143, 184
BspANI GGCC 1 cut(s) 183
BspDI ATCGAT 1 cut(s) 11
BspFNI CGCG 1 cut(s) 186
BspLI GGNNCC 1 cut(s) 147
BspT107I GGYRCC 1 cut(s) 145
BsrFI RCCGGY 1 cut(s) 106
BsrI ACTGG 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 106
Bst2UI CCWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 225
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 2 cut(s) 10, 97
BstFNI CGCG 1 cut(s) 186
BstMCI CGRYCG 2 cut(s) 107, 190
BstNI CCWGG 1 cut(s) 150
BstNSI RCATGY 1 cut(s) 120
BstSCI CCNGG 1 cut(s) 148
BstUI CGCG 1 cut(s) 186
BstV1I GCAGC 1 cut(s) 150
Bsu15I ATCGAT 1 cut(s) 11
BsuRI GGCC 1 cut(s) 183
BsuTUI ATCGAT 1 cut(s) 11
BtsCI GGATG 2 cut(s) 10, 97
Cfr10I RCCGGY 1 cut(s) 106
Cfr13I GGNCC 1 cut(s) 181
ClaI ATCGAT 1 cut(s) 11
Csp6I GTAC 1 cut(s) 169
CviAII CATG 2 cut(s) 68, 117
CviJI RGCY 6 cut(s) 130, 163, 183, 203, 219, 235
CviKI_1 RGCY 6 cut(s) 130, 163, 183, 203, 219, 235
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 47
Eco24I GRGCYC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 148
EcoT22I ATGCAT 1 cut(s) 10
EcoT38I GRGCYC 1 cut(s) 221
FaeI CATG 2 cut(s) 71, 120
FaiI YATR 2 cut(s) 69, 118
FaqI GGGAC 1 cut(s) 76
FatI CATG 2 cut(s) 67, 116
Fnu4HI GCNGC 3 cut(s) 141, 164, 184
FokI GGATG 2 cut(s) 17, 84
FriOI GRGCYC 1 cut(s) 221
Fsp4HI GCNGC 3 cut(s) 141, 164, 184
FspBI CTAG 1 cut(s) 122
GluI GCNGC 3 cut(s) 141, 164, 184
HaeIII GGCC 1 cut(s) 183
HapII CCGG 1 cut(s) 107
Hin1II CATG 2 cut(s) 71, 120
HinfI GANTC 1 cut(s) 64
HpaII CCGG 1 cut(s) 107
HphI GGTGA 1 cut(s) 38
Hpy166II GTNNAC 1 cut(s) 29
Hpy188III TCNNGA 2 cut(s) 122, 243
Hpy8I GTNNAC 1 cut(s) 29
HpyAV CCTTC 1 cut(s) 167
HpyCH4III ACNGT 1 cut(s) 225
HpyCH4V TGCA 1 cut(s) 8
HpyF3I CTNAG 1 cut(s) 47
Hsp92II CATG 2 cut(s) 71, 120
LmnI GCTCC 1 cut(s) 90
LpnPI CCDG 5 cut(s) 68, 116, 120, 135, 162
Lsp1109I GCAGC 1 cut(s) 150
LweI GCATC 2 cut(s) 17, 106
MaeI CTAG 1 cut(s) 122
MhlI GDGCHC 2 cut(s) 87, 221
MlyI GAGTC 1 cut(s) 58
Mph1103I ATGCAT 1 cut(s) 10
MspI CCGG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 150
MvaI CCWGG 1 cut(s) 150
MvnI CGCG 1 cut(s) 186
NlaIII CATG 2 cut(s) 71, 120
NlaIV GGNNCC 1 cut(s) 147
NsiI ATGCAT 1 cut(s) 10
NspI RCATGY 1 cut(s) 120
PciI ACATGT 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 100
Pfl23II CGTACG 1 cut(s) 168
PkrI GCNGC 3 cut(s) 142, 165, 185
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PscI ACATGT 1 cut(s) 116
Psp6I CCWGG 1 cut(s) 148
PspGI CCWGG 1 cut(s) 148
PspLI CGTACG 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 147
PspPI GGNCC 1 cut(s) 181
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SatI GCNGC 3 cut(s) 141, 164, 184
Sau96I GGNCC 1 cut(s) 181
SchI GAGTC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 150
SduI GDGCHC 2 cut(s) 87, 221
SetI ASST 1 cut(s) 132
SfaNI GCATC 2 cut(s) 17, 106
SsiI CCGC 3 cut(s) 140, 143, 184
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 148
TaaI ACNGT 1 cut(s) 225
TaqI TCGA 2 cut(s) 11, 244
TaqII GACCGA 1 cut(s) 204
TauI GCSGC 2 cut(s) 143, 186
TseI GCWGC 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 77
XbaI TCTAGA 1 cut(s) 121
XceI RCATGY 1 cut(s) 120
XspI CTAG 1 cut(s) 122
Zsp2I ATGCAT 1 cut(s) 10
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.