Rmu_sc0001533.1_g000006

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001533.1
OG0000172
Physical Location & Seq
Reverse (-)
22042 .. 23150
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001533.1_g000006.1.cds

Sequence Viewer

Length: 1044 bp
atgattgccagactggcgaccaagttttcgctcaaggaaggagaagaaccggttaacttggggaatctcagggtttcggggaaagagtttttggctcaaaatttctatttggttgggaggcttaatacctgcagggggttggtgttggattcattccggagcgctgtgaggtcgatgtggaggttgtctggtaccgtggaagtccaaccacggggagaacattttctgtttacgttcacccatgaaagggatgttgctcgagtgaagaagagtggtcgtgggctggattttgtttggatttgggtgacgttggaaggcatacctcctggcattttgaaggaacctactgtccagttagttggtgggacgattggcgaggtgctggaggtggatcgtacggcgctgcgtcggggagatgctcgggtccagctttttctcgctatccatgacccggtgcgttttgaccgtcgagttagggtttctcctgtggatgttctaactctaaggttcaagtatgtaaggcttctagggtgctgtcacttctgcgccatgttgaatcatggtggccagcgttgccctagggtggaggactcagagactgattatgtgatggaggcaggctcgcagcaagcaatgggaccgatcgctccagccctagtctttagggcaaacgttcagccctctatttcttctccgctactatcttccttcaaggtcccaaagctgaagaggaaagctgtgcagatccgtgaactgccagcgtttgagtctcccgggactgaagatacttcgactcaaactccgggggtggggatgcgtcgtcccagagatgaggacggccctgaagatggtaagcgtgccaaacatggtttggatttggttccgggcactctcaagccggaaaacctcgacctccaggtttctgatgcaggtttggttggtgggaagtggtctccagcttcgaaggtaagtgtacaagaagaagggtcagcctcgtggctccagaaacaaggccaaagcgacaccggcggcgtcctccggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

347

Amino Acids

38.31

Weight (kDa)

9.33

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 137, 920
Acc65I GGTACC 1 cut(s) 191
AccB1I GGYRCC 1 cut(s) 191
AccIII TCCGGA 1 cut(s) 156
AciI CCGC 2 cut(s) 695, 1029
AclI AACGTT 1 cut(s) 672
AclWI GGATC 2 cut(s) 399, 739
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 3 cut(s) 746, 801, 864
AcyI GRCGYC 1 cut(s) 1032
AfaI GTAC 3 cut(s) 193, 397, 975
AfeI AGCGCT 1 cut(s) 163
AfiI CCNNNNNNNGG 8 cut(s) 135, 211, 246, 247, 451, 583, 809, 848
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 4 cut(s) 337, 511, 556, 712
AjnI CCWGG 2 cut(s) 325, 915
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 4 cut(s) 430, 724, 737, 959
AluI AGCT 4 cut(s) 430, 724, 737, 959
Alw26I GTCTC 3 cut(s) 590, 774, 957
AlwI GGATC 2 cut(s) 399, 739
AlwNI CAGNNNCTG 1 cut(s) 599
Ama87I CYCGRG 3 cut(s) 258, 420, 773
Aor13HI TCCGGA 1 cut(s) 156
Aor51HI AGCGCT 1 cut(s) 163
AoxI GGCC 3 cut(s) 565, 838, 1012
ApeKI GCWGC 2 cut(s) 403, 625
ApoI RAATTY 1 cut(s) 100
ArsI GACNNNNNNTTYG 2 cut(s) 10, 42
AsiGI ACCGGT 1 cut(s) 49
Asp700I GAANNNNTTC 1 cut(s) 222
Asp718I GGTACC 1 cut(s) 191
AspA2I CCTAGG 1 cut(s) 578
AspLEI GCGC 3 cut(s) 164, 403, 548
AspS9I GGNCC 4 cut(s) 424, 638, 715, 839
AsuC2I CCSGG 5 cut(s) 452, 774, 775, 804, 885
AsuHPI GGTGA 2 cut(s) 229, 316
AsuII TTCGAA 1 cut(s) 962
AvaI CYCGRG 3 cut(s) 258, 420, 773
AvaII GGWCC 3 cut(s) 424, 638, 715
AvrII CCTAGG 1 cut(s) 578
BaeGI GKGCMC 1 cut(s) 890
BalI TGGCCA 1 cut(s) 567
BanI GGYRCC 1 cut(s) 191
BauI CACGAG 1 cut(s) 994
BbvI GCAGC 2 cut(s) 390, 637
BccI CCATC 2 cut(s) 604, 842
BceAI ACGGC 2 cut(s) 414, 853
BciT130I CCWGG 2 cut(s) 327, 917
BcnI CCSGG 5 cut(s) 452, 774, 775, 804, 885
BcoDI GTCTC 3 cut(s) 590, 774, 957
BfaI CTAG 3 cut(s) 527, 579, 656
BfmI CTRYAG 1 cut(s) 130
BfoI RGCGCY 2 cut(s) 165, 404
BfuAI ACCTGC 2 cut(s) 137, 920
BglI GCCNNNNNGGC 1 cut(s) 14
BisI GCNGC 3 cut(s) 404, 626, 1030
BlnI CCTAGG 1 cut(s) 578
BlsI GCNGC 3 cut(s) 405, 627, 1031
Bme1390I CCNGG 7 cut(s) 327, 452, 774, 775, 804, 885, 917
Bme18I GGWCC 3 cut(s) 424, 638, 715
BmeT110I CYCGRG 3 cut(s) 258, 420, 773
BmgT120I GGNCC 4 cut(s) 424, 638, 715, 839
BmiI GGNNCC 7 cut(s) 193, 342, 425, 639, 717, 882, 1001
BmrFI CCNGG 7 cut(s) 327, 452, 774, 775, 804, 885, 917
BmsI GCATC 3 cut(s) 406, 804, 916
BplI GAGNNNNNCTC 2 cut(s) 605, 637
BpmI CTGGAG 5 cut(s) 404, 633, 899, 939, 986
Bpu14I TTCGAA 1 cut(s) 962
BpuEI CTTGAG 2 cut(s) 17, 878
BpuMI CCSGG 5 cut(s) 452, 774, 775, 804, 885
BsaHI GRCGYC 1 cut(s) 1032
BsaI GGTCTC 1 cut(s) 957
BsaJI CCNNGG 5 cut(s) 195, 209, 578, 773, 803
BsaWI WCCGGW 3 cut(s) 49, 156, 1038
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 8 cut(s) 135, 211, 246, 247, 451, 583, 809, 848
Bse118I RCCGGY 2 cut(s) 49, 1025
Bse1I ACTGG 2 cut(s) 18, 352
Bse3DI GCAATG 1 cut(s) 639
BseAI TCCGGA 1 cut(s) 156
BseBI CCWGG 2 cut(s) 327, 917
BseDI CCNNGG 5 cut(s) 195, 209, 578, 773, 803
BseGI GGATG 3 cut(s) 256, 496, 819
BseLI CCNNNNNNNGG 8 cut(s) 135, 211, 246, 247, 451, 583, 809, 848
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 2 cut(s) 82, 606
BseNI ACTGG 2 cut(s) 18, 352
BseSI GKGCMC 1 cut(s) 890
BseXI GCAGC 2 cut(s) 390, 637
BsgI GTGCAG 1 cut(s) 761
Bsh1285I CGRYCG 1 cut(s) 645
BshFI GGCC 3 cut(s) 567, 840, 1014
BshNI GGYRCC 1 cut(s) 191
BshTI ACCGGT 1 cut(s) 49
BsiEI CGRYCG 1 cut(s) 645
BsiHKCI CYCGRG 3 cut(s) 258, 420, 773
BsiSI CCGG 9 cut(s) 50, 157, 452, 774, 803, 884, 899, 1026, 1039
BsiWI CGTACG 1 cut(s) 395
BslFI GGGAC 5 cut(s) 379, 651, 701, 790, 807
BslI CCNNNNNNNGG 8 cut(s) 135, 211, 246, 247, 451, 583, 809, 848
BsmAI GTCTC 3 cut(s) 590, 774, 957
BsmFI GGGAC 5 cut(s) 379, 651, 701, 790, 807
BsnI GGCC 3 cut(s) 567, 840, 1014
Bso31I GGTCTC 1 cut(s) 957
BsoBI CYCGRG 3 cut(s) 258, 420, 773
Bsp119I TTCGAA 1 cut(s) 962
Bsp1286I GDGCHC 1 cut(s) 890
Bsp13I TCCGGA 1 cut(s) 156
Bsp1407I TGTACA 1 cut(s) 973
Bsp143I GATC 3 cut(s) 391, 642, 744
BspACI CCGC 2 cut(s) 695, 1029
BspANI GGCC 3 cut(s) 567, 840, 1014
BspCNI CTCAG 2 cut(s) 81, 605
BspEI TCCGGA 1 cut(s) 156
BspLI GGNNCC 7 cut(s) 193, 342, 425, 639, 717, 882, 1001
BspMAI CTGCAG 1 cut(s) 134
BspMI ACCTGC 2 cut(s) 137, 920
BspPI GGATC 2 cut(s) 399, 739
BspT104I TTCGAA 1 cut(s) 962
BspT107I GGYRCC 1 cut(s) 191
BspTNI GGTCTC 1 cut(s) 957
BsrDI GCAATG 1 cut(s) 639
BsrFI RCCGGY 2 cut(s) 49, 1025
BsrGI TGTACA 1 cut(s) 973
BsrI ACTGG 2 cut(s) 18, 352
BssAI RCCGGY 2 cut(s) 49, 1025
BssECI CCNNGG 5 cut(s) 195, 209, 578, 773, 803
BssMI GATC 3 cut(s) 391, 642, 744
BssNI GRCGYC 1 cut(s) 1032
BssSI CACGAG 1 cut(s) 994
BssT1I CCWWGG 1 cut(s) 578
Bst2BI CACGAG 1 cut(s) 994
Bst2UI CCWGG 2 cut(s) 327, 917
Bst4CI ACNGT 3 cut(s) 196, 349, 467
Bst6I CTCTTC 2 cut(s) 263, 722
BstACI GRCGYC 1 cut(s) 1032
BstAUI TGTACA 1 cut(s) 973
BstBI TTCGAA 1 cut(s) 962
BstC8I GCNNGC 6 cut(s) 569, 619, 623, 630, 759, 858
BstDEI CTNAG 3 cut(s) 68, 503, 592
BstDSI CCRYGG 2 cut(s) 195, 209
BstF5I GGATG 3 cut(s) 256, 496, 819
BstH2I RGCGCY 2 cut(s) 165, 404
BstHHI GCGC 3 cut(s) 164, 403, 548
BstKTI GATC 3 cut(s) 394, 645, 747
BstMAI GTCTC 3 cut(s) 590, 774, 957
BstMBI GATC 3 cut(s) 391, 642, 744
BstMCI CGRYCG 1 cut(s) 645
BstMWI GCNNNNNNNGC 3 cut(s) 14, 573, 1026
BstNI CCWGG 2 cut(s) 327, 917
BstSCI CCNGG 7 cut(s) 325, 450, 772, 773, 802, 883, 915
BstSFI CTRYAG 1 cut(s) 130
BstSLI GKGCMC 1 cut(s) 890
BstV1I GCAGC 2 cut(s) 390, 637
BstX2I RGATCY 1 cut(s) 744
BstXI CCANNNNNNTGG 1 cut(s) 359
BstYI RGATCY 1 cut(s) 744
BsuRI GGCC 3 cut(s) 567, 840, 1014
BtgI CCRYGG 2 cut(s) 195, 209
BtsCI GGATG 3 cut(s) 256, 496, 819
BveI ACCTGC 2 cut(s) 137, 920
Cac8I GCNNGC 6 cut(s) 569, 619, 623, 630, 759, 858
CaiI CAGNNNCTG 1 cut(s) 599
CfoI GCGC 3 cut(s) 164, 403, 548
Cfr10I RCCGGY 2 cut(s) 49, 1025
Cfr13I GGNCC 4 cut(s) 424, 638, 715, 839
Cfr9I CCCGGG 1 cut(s) 773
CseI GACGC 3 cut(s) 395, 806, 1021
Csp6I GTAC 3 cut(s) 192, 396, 974
CspAI ACCGGT 1 cut(s) 49
CviAII CATG 5 cut(s) 242, 446, 550, 560, 866
CviQI GTAC 3 cut(s) 192, 396, 974
DdeI CTNAG 3 cut(s) 68, 503, 592
DpnI GATC 3 cut(s) 393, 644, 746
DpnII GATC 3 cut(s) 391, 642, 744
EaeI YGGCCR 1 cut(s) 565
Eam1104I CTCTTC 2 cut(s) 263, 722
EarI CTCTTC 2 cut(s) 263, 722
Eco130I CCWWGG 1 cut(s) 578
Eco31I GGTCTC 1 cut(s) 957
Eco47I GGWCC 3 cut(s) 424, 638, 715
Eco47III AGCGCT 1 cut(s) 163
Eco57I CTGAAG 3 cut(s) 746, 801, 864
Eco88I CYCGRG 3 cut(s) 258, 420, 773
EcoO109I RGGNCCY 1 cut(s) 715
EcoRII CCWGG 2 cut(s) 325, 915
EcoT14I CCWWGG 1 cut(s) 578
ErhI CCWWGG 1 cut(s) 578
FaeI CATG 5 cut(s) 245, 449, 553, 563, 869
FaiI YATR 8 cut(s) 243, 320, 447, 516, 551, 561, 606, 867
FaqI GGGAC 5 cut(s) 379, 651, 701, 790, 807
FatI CATG 5 cut(s) 241, 445, 549, 559, 865
Fnu4HI GCNGC 3 cut(s) 404, 626, 1030
FokI GGATG 3 cut(s) 263, 503, 826
Fsp4HI GCNGC 3 cut(s) 404, 626, 1030
FspBI CTAG 3 cut(s) 527, 579, 656
GlaI GCGC 3 cut(s) 163, 402, 547
GluI GCNGC 3 cut(s) 404, 626, 1030
GsuI CTGGAG 5 cut(s) 404, 633, 899, 939, 986
HaeII RGCGCY 2 cut(s) 165, 404
HaeIII GGCC 3 cut(s) 567, 840, 1014
HapII CCGG 9 cut(s) 50, 157, 452, 774, 803, 884, 899, 1026, 1039
HgaI GACGC 3 cut(s) 395, 806, 1021
HhaI GCGC 3 cut(s) 164, 403, 548
Hin1I GRCGYC 1 cut(s) 1032
Hin1II CATG 5 cut(s) 245, 449, 553, 563, 869
Hin6I GCGC 3 cut(s) 162, 401, 546
HinP1I GCGC 3 cut(s) 162, 401, 546
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HinfI GANTC 6 cut(s) 64, 149, 556, 590, 767, 793
HpaI GTTAAC 1 cut(s) 55
HpaII CCGG 9 cut(s) 50, 157, 452, 774, 803, 884, 899, 1026, 1039
HphI GGTGA 2 cut(s) 229, 316
Hpy166II GTNNAC 5 cut(s) 55, 231, 237, 752, 974
Hpy188I TCNGA 2 cut(s) 595, 925
Hpy188III TCNNGA 2 cut(s) 157, 1003
Hpy8I GTNNAC 5 cut(s) 55, 231, 237, 752, 974
Hpy99I CGWCG 3 cut(s) 411, 471, 822
HpyAV CCTTC 6 cut(s) 32, 308, 331, 718, 958, 977
HpyCH4III ACNGT 3 cut(s) 196, 349, 467
HpyCH4IV ACGT 3 cut(s) 233, 308, 672
HpyCH4V TGCA 3 cut(s) 132, 742, 929
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 573, 1026
HpyF3I CTNAG 3 cut(s) 68, 503, 592
HpySE526I ACGT 3 cut(s) 233, 308, 672
Hsp92I GRCGYC 1 cut(s) 1032
Hsp92II CATG 5 cut(s) 245, 449, 553, 563, 869
HspAI GCGC 3 cut(s) 162, 401, 546
Kpn2I TCCGGA 1 cut(s) 156
KpnI GGTACC 1 cut(s) 195
KspAI GTTAAC 1 cut(s) 55
Kzo9I GATC 3 cut(s) 391, 642, 744
LmnI GCTCC 3 cut(s) 159, 652, 1005
Lsp1109I GCAGC 2 cut(s) 390, 637
LweI GCATC 3 cut(s) 406, 804, 916
MaeI CTAG 3 cut(s) 527, 579, 656
MaeII ACGT 3 cut(s) 233, 308, 672
MaeIII GTNAC 2 cut(s) 304, 536
MalI GATC 3 cut(s) 393, 644, 746
MboI GATC 3 cut(s) 391, 642, 744
MboII GAAGA 9 cut(s) 56, 277, 280, 681, 696, 739, 794, 857, 992
MflI RGATCY 1 cut(s) 744
MhlI GDGCHC 1 cut(s) 890
MlsI TGGCCA 1 cut(s) 567
MluCI AATT 1 cut(s) 100
MluNI TGGCCA 1 cut(s) 567
MlyI GAGTC 3 cut(s) 584, 776, 787
MmeI TCCRAC 3 cut(s) 126, 229, 291
Mox20I TGGCCA 1 cut(s) 567
MroI TCCGGA 1 cut(s) 156
MroXI GAANNNNTTC 1 cut(s) 222
MscI TGGCCA 1 cut(s) 567
MseI TTAA 2 cut(s) 54, 123
Msp20I TGGCCA 1 cut(s) 567
MspI CCGG 9 cut(s) 50, 157, 452, 774, 803, 884, 899, 1026, 1039
MspR9I CCNGG 7 cut(s) 327, 452, 774, 775, 804, 885, 917
MvaI CCWGG 2 cut(s) 327, 917
MwoI GCNNNNNNNGC 3 cut(s) 14, 573, 1026
NciI CCSGG 5 cut(s) 452, 774, 775, 804, 885
NdeII GATC 3 cut(s) 391, 642, 744
NlaIII CATG 5 cut(s) 245, 449, 553, 563, 869
NlaIV GGNNCC 7 cut(s) 193, 342, 425, 639, 717, 882, 1001
NmuCI GTSAC 2 cut(s) 304, 536
NspV TTCGAA 1 cut(s) 962
PaeR7I CTCGAG 1 cut(s) 258
PdmI GAANNNNTTC 1 cut(s) 222
PfeI GAWTC 3 cut(s) 64, 149, 556
Pfl23II CGTACG 1 cut(s) 395
PinAI ACCGGT 1 cut(s) 49
PkrI GCNGC 3 cut(s) 405, 627, 1031
Ple19I CGATCG 1 cut(s) 645
PleI GAGTC 3 cut(s) 584, 775, 787
PpsI GAGTC 3 cut(s) 584, 775, 787
PpuMI RGGWCCY 1 cut(s) 715
Psp1406I AACGTT 1 cut(s) 672
Psp5II RGGWCCY 1 cut(s) 715
Psp6I CCWGG 2 cut(s) 325, 915
PspGI CCWGG 2 cut(s) 325, 915
PspLI CGTACG 1 cut(s) 395
PspN4I GGNNCC 7 cut(s) 193, 342, 425, 639, 717, 882, 1001
PspPI GGNCC 4 cut(s) 424, 638, 715, 839
PspPPI RGGWCCY 1 cut(s) 715
PspXI VCTCGAGB 1 cut(s) 258
PstI CTGCAG 1 cut(s) 134
PstNI CAGNNNCTG 1 cut(s) 599
PsuI RGATCY 1 cut(s) 744
PvuI CGATCG 1 cut(s) 645
RsaI GTAC 3 cut(s) 193, 397, 975
RsaNI GTAC 3 cut(s) 192, 396, 974
SaqAI TTAA 2 cut(s) 54, 123
SatI GCNGC 3 cut(s) 404, 626, 1030
Sau3AI GATC 3 cut(s) 391, 642, 744
Sau96I GGNCC 4 cut(s) 424, 638, 715, 839
SbfI CCTGCAGG 1 cut(s) 134
SchI GAGTC 3 cut(s) 584, 776, 787
ScrFI CCNGG 7 cut(s) 327, 452, 774, 775, 804, 885, 917
SdaI CCTGCAGG 1 cut(s) 134
SduI GDGCHC 1 cut(s) 890
SfaNI GCATC 3 cut(s) 406, 804, 916
SfcI CTRYAG 1 cut(s) 130
Sfr274I CTCGAG 1 cut(s) 258
SfuI TTCGAA 1 cut(s) 962
SgrAI CRCCGGYG 1 cut(s) 1025
SinI GGWCC 3 cut(s) 424, 638, 715
SlaI CTCGAG 1 cut(s) 258
SmaI CCCGGG 1 cut(s) 775
SmlI CTYRAG 3 cut(s) 32, 258, 893
SmoI CTYRAG 3 cut(s) 32, 258, 893
Sse8387I CCTGCAGG 1 cut(s) 134
Sse9I AATT 1 cut(s) 100
SsiI CCGC 2 cut(s) 695, 1029
SspMI CTAG 3 cut(s) 527, 579, 656
StyD4I CCNGG 7 cut(s) 325, 450, 772, 773, 802, 883, 915
StyI CCWWGG 1 cut(s) 578
TaaI ACNGT 3 cut(s) 196, 349, 467
TaiI ACGT 3 cut(s) 236, 311, 675
TaqI TCGA 6 cut(s) 173, 259, 469, 791, 909, 962
TaqII GACCGA 1 cut(s) 655
TasI AATT 1 cut(s) 100
TatI WGTACW 1 cut(s) 973
TauI GCSGC 1 cut(s) 1032
TfiI GAWTC 3 cut(s) 64, 149, 556
Tru1I TTAA 2 cut(s) 54, 123
Tru9I TTAA 2 cut(s) 54, 123
TseFI GTSAC 2 cut(s) 304, 536
TseI GCWGC 2 cut(s) 403, 625
Tsp45I GTSAC 2 cut(s) 304, 536
TspDTI ATGAA 2 cut(s) 141, 258
TspGWI ACGGA 1 cut(s) 737
TspMI CCCGGG 1 cut(s) 773
VpaK11BI GGWCC 3 cut(s) 424, 638, 715
XapI RAATTY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 2 cut(s) 359, 868
XhoI CTCGAG 1 cut(s) 258
XmaI CCCGGG 1 cut(s) 773
XmaJI CCTAGG 1 cut(s) 578
XmnI GAANNNNTTC 1 cut(s) 222
XspI CTAG 3 cut(s) 527, 579, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.