Rmu_sc0000889.1_g000005

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000889.1
OG0000172
Physical Location & Seq
Forward (+)
35751 .. 41443
5693 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000889.1_g000005.1.cds

Sequence Viewer

Length: 630 bp
atggagatggtgatgaagaacttgaatgatgaacaaatgaaacttgaaagcaagcttcaaaacctcacggcctcaaggtggaatggtggagatgagcacggcttgttcttgcttcttccttccttgcttgaaaacgcagaagatgaactagagaatggagagagctttcgcgtcccaagcccagttttaccctctcccttcgcccgccgatttcttcaccgtccggcctccaatcggcgggattccaaagggaatcctgctcgcctcagtcccctctacacgtctgctgtggtgattcgtcgtgggaagcaccgtagacggcgctacaaggccgggaagtttggcggcggcgatgcttcgaacccagatcagaacttctcattccggccacctcaggcggtgattcttggaggcccagaggacatagatgcttccctccaagcggcttgcaacgattcaacctgtggagctcgaatttggaagattggaaatctggggttcatcggttttcaaaacttgcgaggtagatttcagccaaatggctttgattctgactttgtgctagttatgaaagttttaattggagttgagatgaagaactttggtgttggaagttttgccaaattctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

209

Amino Acids

23.26

Weight (kDa)

9.69

Isoelectric Point (pI)

57.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 316
AccII CGCG 1 cut(s) 171
AciI CCGC 6 cut(s) 205, 238, 345, 348, 398, 443
AcoI YGGCCR 1 cut(s) 386
AcsI RAATTY 2 cut(s) 474, 623
AfiI CCNNNNNNNGG 4 cut(s) 78, 234, 237, 442
AflIII ACRYGT 1 cut(s) 279
AgsI TTSAA 6 cut(s) 25, 47, 59, 131, 459, 512
AjiI CACGTC 1 cut(s) 282
AluBI AGCT 3 cut(s) 55, 165, 470
AluI AGCT 3 cut(s) 55, 165, 470
Alw21I GWGCWC 2 cut(s) 99, 472
AoxI GGCC 5 cut(s) 69, 225, 330, 386, 412
ApoI RAATTY 2 cut(s) 474, 623
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 1 cut(s) 413
AsuC2I CCSGG 1 cut(s) 334
AsuHPI GGTGA 4 cut(s) 22, 209, 304, 412
AsuII TTCGAA 1 cut(s) 359
AxyI CCTNAGG 1 cut(s) 393
BanII GRGCYC 1 cut(s) 472
Bbv12I GWGCWC 2 cut(s) 99, 472
BceAI ACGGC 3 cut(s) 84, 115, 335
BcnI CCSGG 1 cut(s) 334
BfaI CTAG 2 cut(s) 149, 563
BfoI RGCGCY 1 cut(s) 325
BisI GCNGC 3 cut(s) 346, 349, 444
BlsI GCNGC 3 cut(s) 347, 350, 445
Bme1390I CCNGG 1 cut(s) 334
BmgBI CACGTC 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 413
BmrFI CCNGG 1 cut(s) 334
BmrI ACTGGG 1 cut(s) 176
BmsI GCATC 2 cut(s) 343, 418
BmuI ACTGGG 1 cut(s) 176
Bpu14I TTCGAA 1 cut(s) 359
BpuEI CTTGAG 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 334
Bsc4I CCNNNNNNNGG 4 cut(s) 78, 234, 237, 442
Bse1I ACTGG 1 cut(s) 182
Bse21I CCTNAGG 1 cut(s) 393
BseLI CCNNNNNNNGG 4 cut(s) 78, 234, 237, 442
BseMII CTCAG 2 cut(s) 280, 407
BseNI ACTGG 1 cut(s) 182
Bsh1236I CGCG 1 cut(s) 171
BshFI GGCC 5 cut(s) 71, 227, 332, 388, 414
BsiHKAI GWGCWC 2 cut(s) 99, 472
BsiSI CCGG 3 cut(s) 224, 333, 385
BslFI GGGAC 2 cut(s) 158, 255
BslI CCNNNNNNNGG 4 cut(s) 78, 234, 237, 442
BsmFI GGGAC 2 cut(s) 158, 255
BsnI GGCC 5 cut(s) 71, 227, 332, 388, 414
Bsp119I TTCGAA 1 cut(s) 359
Bsp1286I GDGCHC 2 cut(s) 99, 472
Bsp143I GATC 1 cut(s) 367
BspACI CCGC 6 cut(s) 205, 238, 345, 348, 398, 443
BspANI GGCC 5 cut(s) 71, 227, 332, 388, 414
BspCNI CTCAG 2 cut(s) 279, 406
BspFNI CGCG 1 cut(s) 171
BspT104I TTCGAA 1 cut(s) 359
BsrI ACTGG 1 cut(s) 182
BssMI GATC 1 cut(s) 367
Bst4CI ACNGT 2 cut(s) 221, 314
BstBI TTCGAA 1 cut(s) 359
BstC8I GCNNGC 4 cut(s) 53, 205, 262, 448
BstDEI CTNAG 2 cut(s) 266, 393
BstFNI CGCG 1 cut(s) 171
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 177
BstSCI CCNGG 1 cut(s) 332
BstUI CGCG 1 cut(s) 171
Bsu36I CCTNAGG 1 cut(s) 393
BsuRI GGCC 5 cut(s) 71, 227, 332, 388, 414
BtgZI GCGATG 1 cut(s) 366
BtrI CACGTC 1 cut(s) 282
Cac8I GCNNGC 4 cut(s) 53, 205, 262, 448
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 1 cut(s) 413
CseI GACGC 1 cut(s) 160
DdeI CTNAG 2 cut(s) 266, 393
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
EaeI YGGCCR 1 cut(s) 386
Ecl136II GAGCTC 1 cut(s) 470
Eco24I GRGCYC 1 cut(s) 472
Eco53kI GAGCTC 1 cut(s) 470
Eco81I CCTNAGG 1 cut(s) 393
EcoICRI GAGCTC 1 cut(s) 470
EcoT38I GRGCYC 1 cut(s) 472
FaiI YATR 2 cut(s) 425, 569
FaqI GGGAC 2 cut(s) 158, 255
FauI CCCGC 2 cut(s) 212, 231
FblI GTMKAC 1 cut(s) 316
Fnu4HI GCNGC 3 cut(s) 346, 349, 444
FriOI GRGCYC 1 cut(s) 472
Fsp4HI GCNGC 3 cut(s) 346, 349, 444
FspBI CTAG 2 cut(s) 149, 563
GlaI GCGC 1 cut(s) 323
GluI GCNGC 3 cut(s) 346, 349, 444
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 5 cut(s) 71, 227, 332, 388, 414
HapII CCGG 3 cut(s) 224, 333, 385
HgaI GACGC 1 cut(s) 160
HhaI GCGC 1 cut(s) 324
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 6 cut(s) 242, 253, 295, 403, 455, 548
HpaII CCGG 3 cut(s) 224, 333, 385
HphI GGTGA 4 cut(s) 22, 209, 304, 412
Hpy166II GTNNAC 1 cut(s) 317
Hpy188I TCNGA 3 cut(s) 372, 553, 629
Hpy8I GTNNAC 1 cut(s) 317
Hpy99I CGWCG 1 cut(s) 303
HpyAV CCTTC 2 cut(s) 129, 208
HpyCH4III ACNGT 2 cut(s) 221, 314
HpyCH4IV ACGT 1 cut(s) 281
HpyCH4V TGCA 1 cut(s) 450
HpyF10VI GCNNNNNNNGC 1 cut(s) 177
HpyF3I CTNAG 2 cut(s) 266, 393
HpySE526I ACGT 1 cut(s) 281
HspAI GCGC 1 cut(s) 322
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 1 cut(s) 467
LweI GCATC 2 cut(s) 343, 418
MaeI CTAG 2 cut(s) 149, 563
MaeII ACGT 1 cut(s) 281
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 6 cut(s) 28, 107, 152, 206, 493, 607
MhlI GDGCHC 2 cut(s) 99, 472
MluCI AATT 3 cut(s) 474, 579, 623
MmeI TCCRAC 1 cut(s) 589
MseI TTAA 1 cut(s) 578
MspI CCGG 3 cut(s) 224, 333, 385
MspR9I CCNGG 1 cut(s) 334
MvnI CGCG 1 cut(s) 171
MwoI GCNNNNNNNGC 1 cut(s) 177
NciI CCSGG 1 cut(s) 334
NdeII GATC 1 cut(s) 367
NspV TTCGAA 1 cut(s) 359
PfeI GAWTC 6 cut(s) 242, 253, 295, 403, 455, 548
PkrI GCNGC 3 cut(s) 347, 350, 445
Psp124BI GAGCTC 1 cut(s) 472
PspPI GGNCC 1 cut(s) 413
SacI GAGCTC 1 cut(s) 472
SaqAI TTAA 1 cut(s) 578
SatI GCNGC 3 cut(s) 346, 349, 444
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 1 cut(s) 413
ScrFI CCNGG 1 cut(s) 334
SduI GDGCHC 2 cut(s) 99, 472
SetI ASST 9 cut(s) 57, 66, 80, 167, 284, 394, 464, 472, 526
SfaNI GCATC 2 cut(s) 343, 418
SfuI TTCGAA 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 3 cut(s) 474, 579, 623
SsiI CCGC 6 cut(s) 205, 238, 345, 348, 398, 443
SspMI CTAG 2 cut(s) 149, 563
SstI GAGCTC 1 cut(s) 472
StyD4I CCNGG 1 cut(s) 332
TaaI ACNGT 2 cut(s) 221, 314
TaiI ACGT 1 cut(s) 284
TaqI TCGA 2 cut(s) 359, 472
TasI AATT 3 cut(s) 474, 579, 623
TauI GCSGC 3 cut(s) 348, 351, 446
TfiI GAWTC 6 cut(s) 242, 253, 295, 403, 455, 548
Tru1I TTAA 1 cut(s) 578
Tru9I TTAA 1 cut(s) 578
TspDTI ATGAA 7 cut(s) 29, 45, 53, 159, 490, 584, 608
XapI RAATTY 2 cut(s) 474, 623
XmiI GTMKAC 1 cut(s) 316
XspI CTAG 2 cut(s) 149, 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.