Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

22369811 .. 22371401

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g18531.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCCGCGGTCATGGCTTCCACTACTGCTTCAGTAACAGCTAGTCTCATCTCAAAGCTCTCTCTCACCAACGAGGAGGAACCAGTAGATCTAGGAAACCTTCGATGCCCTAAAAAGGAGCGCTATTCACTCCATGTGGAGGCTCTCCAGGACGGTGGACGTCCAAGCAAGGGGCGACAGAGCTTGTCGATAGCTCTCTCCAGCGTTGTAATTGCATGTCTCGTGGCGGAGACTATTGGGAATATTATGGAGGTCAATCATGGTGGTTTCCAACGCGGCATTGCAAGAGTGCAGATCCAGGATGTACCTGCTTTCCCATCCCCAACAAAGATTACTGGTACTCGAAAAGAACGTGAGGAGGAAGAGCAGGAGAATGGTAAGCGCCCAAAGCACGCTTTGGCATTGTTCCCTCTGCCACTGAATCCACAGGAGCTAGGGTTTAAGCAGACCGTTGAAGGTGGTTTAAGGCCTTTCGGCATTGCAAAGAATGCTGCAAGCTCCATTATGGAAGAGCCTAGCCTCAATTCTGAGGCCGGGGAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

182

Amino Acids

19.45

Weight (kDa)

6.33

Isoelectric Point (pI)

59.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	163
Acc36I	ACCTGC	1 cut(s)	316
AccII	CGCG	2 cut(s)	8, 276
AciI	CCGC	4 cut(s)	6, 8, 227, 276
AclWI	GGATC	1 cut(s)	289
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	15
AcyI	GRCGYC	1 cut(s)	160
AfaI	GTAC	2 cut(s)	306, 340
AfeI	AGCGCT	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	115, 139, 170
AgsI	TTSAA	1 cut(s)	455
AjnI	CCWGG	2 cut(s)	147, 297
AluBI	AGCT	6 cut(s)	41, 58, 183, 194, 433, 498
AluI	AGCT	6 cut(s)	41, 58, 183, 194, 433, 498
Alw26I	GTCTC	3 cut(s)	50, 224, 224
AlwI	GGATC	1 cut(s)	289
Aor51HI	AGCGCT	1 cut(s)	122
AoxI	GGCC	3 cut(s)	3, 467, 531
ApeKI	GCWGC	1 cut(s)	491
AspLEI	GCGC	2 cut(s)	123, 384
AsuC2I	CCSGG	1 cut(s)	535
AsuHPI	GGTGA	1 cut(s)	58
BauI	CACGAG	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	478
BccI	CCATC	1 cut(s)	325
BciT130I	CCWGG	2 cut(s)	149, 299
BcnI	CCSGG	1 cut(s)	535
BcoDI	GTCTC	3 cut(s)	50, 224, 224
BfaI	CTAG	4 cut(s)	42, 92, 434, 516
BfoI	RGCGCY	2 cut(s)	124, 385
BfuAI	ACCTGC	1 cut(s)	316
BglII	AGATCT	1 cut(s)	88
BisI	GCNGC	3 cut(s)	6, 277, 492
BlsI	GCNGC	3 cut(s)	7, 278, 493
Bme1390I	CCNGG	3 cut(s)	149, 299, 535
BmiI	GGNNCC	1 cut(s)	81
BmrFI	CCNGG	3 cut(s)	149, 299, 535
BmsI	GCATC	1 cut(s)	95
BpmI	CTGGAG	2 cut(s)	131, 184
BpuMI	CCSGG	1 cut(s)	535
BsaHI	GRCGYC	1 cut(s)	160
BsaJI	CCNNGG	2 cut(s)	6, 534
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	115, 139, 170
Bse1I	ACTGG	2 cut(s)	83, 340
Bse3DI	GCAATG	2 cut(s)	279, 477
BseBI	CCWGG	2 cut(s)	149, 299
BseDI	CCNNGG	2 cut(s)	6, 534
BseGI	GGATG	2 cut(s)	307, 317
BseLI	CCNNNNNNNGG	3 cut(s)	115, 139, 170
BseMI	GCAATG	2 cut(s)	279, 477
BseMII	CTCAG	1 cut(s)	519
BseNI	ACTGG	2 cut(s)	83, 340
BseRI	GAGGAG	2 cut(s)	89, 371
BseXI	GCAGC	1 cut(s)	478
BsgI	GTGCAG	1 cut(s)	311
Bsh1236I	CGCG	2 cut(s)	8, 276
BshFI	GGCC	3 cut(s)	5, 469, 533
BsiSI	CCGG	1 cut(s)	534
BslI	CCNNNNNNNGG	3 cut(s)	115, 139, 170
BsmAI	GTCTC	3 cut(s)	50, 224, 224
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	5, 469, 533
Bsp143I	GATC	2 cut(s)	88, 294
BspACI	CCGC	4 cut(s)	6, 8, 227, 276
BspANI	GGCC	3 cut(s)	5, 469, 533
BspCNI	CTCAG	1 cut(s)	520
BspFNI	CGCG	2 cut(s)	8, 276
BspLI	GGNNCC	1 cut(s)	81
BspMI	ACCTGC	1 cut(s)	316
BspPI	GGATC	1 cut(s)	289
BspQI	GCTCTTC	2 cut(s)	357, 504
BsrDI	GCAATG	2 cut(s)	279, 477
BsrI	ACTGG	2 cut(s)	83, 340
BssECI	CCNNGG	2 cut(s)	6, 534
BssMI	GATC	2 cut(s)	88, 294
BssNI	GRCGYC	1 cut(s)	160
BssSI	CACGAG	1 cut(s)	221
Bst2BI	CACGAG	1 cut(s)	221
Bst2UI	CCWGG	2 cut(s)	149, 299
Bst4CI	ACNGT	2 cut(s)	155, 451
Bst6I	CTCTTC	2 cut(s)	357, 504
BstACI	GRCGYC	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	488
BstC8I	GCNNGC	2 cut(s)	393, 496
BstDEI	CTNAG	1 cut(s)	528
BstDSI	CCRYGG	1 cut(s)	6
BstF5I	GGATG	2 cut(s)	307, 317
BstFNI	CGCG	2 cut(s)	8, 276
BstH2I	RGCGCY	2 cut(s)	124, 385
BstHHI	GCGC	2 cut(s)	123, 384
BstKTI	GATC	2 cut(s)	91, 297
BstMAI	GTCTC	3 cut(s)	50, 224, 224
BstMBI	GATC	2 cut(s)	88, 294
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 388, 488
BstNI	CCWGG	2 cut(s)	149, 299
BstNSI	RCATGY	1 cut(s)	219
BstSCI	CCNGG	3 cut(s)	147, 297, 533
BstUI	CGCG	2 cut(s)	8, 276
BstV1I	GCAGC	1 cut(s)	478
BstX2I	RGATCY	2 cut(s)	88, 294
BstXI	CCANNNNNNTGG	1 cut(s)	155
BstYI	RGATCY	2 cut(s)	88, 294
BsuRI	GGCC	3 cut(s)	5, 469, 533
BtgI	CCRYGG	1 cut(s)	6
BtsCI	GGATG	2 cut(s)	307, 317
BtsIMutI	CAGTG	1 cut(s)	416
BveI	ACCTGC	1 cut(s)	316
Cac8I	GCNNGC	2 cut(s)	393, 496
CfoI	GCGC	2 cut(s)	123, 384
Cfr42I	CCGCGG	1 cut(s)	9
Csp6I	GTAC	2 cut(s)	305, 339
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	4 cut(s)	13, 134, 216, 260
CviQI	GTAC	2 cut(s)	305, 339
DdeI	CTNAG	1 cut(s)	528
DpnI	GATC	2 cut(s)	90, 296
DpnII	GATC	2 cut(s)	88, 294
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	357, 504
EarI	CTCTTC	2 cut(s)	357, 504
EciI	GGCGGA	1 cut(s)	242
Eco147I	AGGCCT	1 cut(s)	469
Eco47III	AGCGCT	1 cut(s)	122
Eco57I	CTGAAG	1 cut(s)	15
EcoRII	CCWGG	2 cut(s)	147, 297
FaeI	CATG	4 cut(s)	16, 137, 219, 263
FaiI	YATR	6 cut(s)	14, 135, 217, 248, 261, 506
FatI	CATG	4 cut(s)	12, 133, 215, 259
Fnu4HI	GCNGC	3 cut(s)	6, 277, 492
FokI	GGATG	2 cut(s)	304, 314
Fsp4HI	GCNGC	3 cut(s)	6, 277, 492
FspBI	CTAG	4 cut(s)	42, 92, 434, 516
GlaI	GCGC	2 cut(s)	122, 383
GluI	GCNGC	3 cut(s)	6, 277, 492
GsuI	CTGGAG	2 cut(s)	131, 184
HaeII	RGCGCY	2 cut(s)	124, 385
HaeIII	GGCC	3 cut(s)	5, 469, 533
HapII	CCGG	1 cut(s)	534
HhaI	GCGC	2 cut(s)	123, 384
Hin1I	GRCGYC	1 cut(s)	160
Hin1II	CATG	4 cut(s)	16, 137, 219, 263
Hin6I	GCGC	2 cut(s)	121, 382
HinP1I	GCGC	2 cut(s)	121, 382
HinfI	GANTC	1 cut(s)	421
HpaII	CCGG	1 cut(s)	534
HphI	GGTGA	1 cut(s)	58
Hpy166II	GTNNAC	1 cut(s)	158
Hpy188I	TCNGA	1 cut(s)	529
Hpy8I	GTNNAC	1 cut(s)	158
HpyAV	CCTTC	2 cut(s)	110, 449
HpyCH4III	ACNGT	2 cut(s)	155, 451
HpyCH4IV	ACGT	2 cut(s)	160, 352
HpyCH4V	TGCA	5 cut(s)	215, 284, 292, 482, 494
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 388, 488
HpyF3I	CTNAG	1 cut(s)	528
HpySE526I	ACGT	2 cut(s)	160, 352
Hsp92I	GRCGYC	1 cut(s)	160
Hsp92II	CATG	4 cut(s)	16, 137, 219, 263
HspAI	GCGC	2 cut(s)	121, 382
KspI	CCGCGG	1 cut(s)	9
Kzo9I	GATC	2 cut(s)	88, 294
LguI	GCTCTTC	2 cut(s)	357, 504
LmnI	GCTCC	3 cut(s)	118, 430, 503
Lsp1109I	GCAGC	1 cut(s)	478
LweI	GCATC	1 cut(s)	95
MaeI	CTAG	4 cut(s)	42, 92, 434, 516
MaeII	ACGT	2 cut(s)	160, 352
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	90, 296
MboI	GATC	2 cut(s)	88, 294
MboII	GAAGA	2 cut(s)	374, 521
MflI	RGATCY	2 cut(s)	88, 294
MluCI	AATT	2 cut(s)	210, 523
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	9 cut(s)	67, 70, 133, 244, 349, 352, 420, 523, 530
MseI	TTAA	2 cut(s)	441, 464
MspA1I	CMGCKG	1 cut(s)	8
MspI	CCGG	1 cut(s)	534
MspR9I	CCNGG	3 cut(s)	149, 299, 535
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	2 cut(s)	149, 299
MvnI	CGCG	2 cut(s)	8, 276
MwoI	GCNNNNNNNGC	3 cut(s)	14, 388, 488
NciI	CCSGG	1 cut(s)	535
NdeII	GATC	2 cut(s)	88, 294
NlaIII	CATG	4 cut(s)	16, 137, 219, 263
NlaIV	GGNNCC	1 cut(s)	81
NspI	RCATGY	1 cut(s)	219
PceI	AGGCCT	1 cut(s)	469
PciSI	GCTCTTC	2 cut(s)	357, 504
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PctI	GAATGC	1 cut(s)	493
PfeI	GAWTC	1 cut(s)	421
PfoI	TCCNGGA	2 cut(s)	147, 297
PkrI	GCNGC	3 cut(s)	7, 278, 493
Psp6I	CCWGG	2 cut(s)	147, 297
PspGI	CCWGG	2 cut(s)	147, 297
PspN4I	GGNNCC	1 cut(s)	81
PsuI	RGATCY	2 cut(s)	88, 294
RsaI	GTAC	2 cut(s)	306, 340
RsaNI	GTAC	2 cut(s)	305, 339
SacII	CCGCGG	1 cut(s)	9
SapI	GCTCTTC	2 cut(s)	357, 504
SaqAI	TTAA	2 cut(s)	441, 464
SatI	GCNGC	3 cut(s)	6, 277, 492
Sau3AI	GATC	2 cut(s)	88, 294
ScrFI	CCNGG	3 cut(s)	149, 299, 535
SfaNI	GCATC	1 cut(s)	95
Sfr303I	CCGCGG	1 cut(s)	9
SgrBI	CCGCGG	1 cut(s)	9
Sse9I	AATT	2 cut(s)	210, 523
SseBI	AGGCCT	1 cut(s)	469
SsiI	CCGC	4 cut(s)	6, 8, 227, 276
SspI	AATATT	1 cut(s)	244
SspMI	CTAG	4 cut(s)	42, 92, 434, 516
StuI	AGGCCT	1 cut(s)	469
StyD4I	CCNGG	3 cut(s)	147, 297, 533
TaaI	ACNGT	2 cut(s)	155, 451
TaiI	ACGT	2 cut(s)	163, 355
TaqI	TCGA	3 cut(s)	103, 188, 343
TasI	AATT	2 cut(s)	210, 523
TauI	GCSGC	2 cut(s)	8, 279
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	2 cut(s)	441, 464
Tru9I	TTAA	2 cut(s)	441, 464
TscAI	CASTG	1 cut(s)	423
TseI	GCWGC	1 cut(s)	491
TspRI	CASTG	1 cut(s)	423
XceI	RCATGY	1 cut(s)	219
XspI	CTAG	4 cut(s)	42, 92, 434, 516
ZraI	GACGTC	1 cut(s)	161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.