Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

19271096 .. 19271762

Gene Structure 667 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g15541.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCGCGTCATCAAAACCGCTCCTTGGAGCAGGACCAAGAGCACTTGTCCCACATCGGAGAGAAGCAAAAGGGCTAAGACACTTCCAGCCTATAAAAGGGCGCGAAAAGGAAGAGCAGCAGATGATTCTAGTGATGGCAAACGCCCTAAGTATGCATTAGCTATGGTTCCTCTTCCTCTTAACCCAAAGGAGATTGGTTTCACTATTAATGATTCTGGTGTGTTAGAGATTTGGAGGTCTGGGAAATCCCCAAAGAAAAGAGGTCGTCCCTGTGAAAGTTGCAACAAGAAGAAGATGATCGTAGAAGCTCCTAAGGCGTTGGATTCCATGGCCCTTGGTACATCTGGTACTGTGGTAGTAGAGGAGGGAAGCCTTGAGTCCGAGGCTGAGGTGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

133

Amino Acids

14.38

Weight (kDa)

9.93

Isoelectric Point (pI)

63.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	20
AccII	CGCG	2 cut(s)	6, 103
AciI	CCGC	1 cut(s)	18
AfaI	GTAC	2 cut(s)	340, 349
AfiI	CCNNNNNNNGG	2 cut(s)	24, 96
AluBI	AGCT	2 cut(s)	161, 308
AluI	AGCT	2 cut(s)	161, 308
Alw21I	GWGCWC	1 cut(s)	44
AoxI	GGCC	1 cut(s)	330
ApeKI	GCWGC	1 cut(s)	116
AseI	ATTAAT	1 cut(s)	207
AspLEI	GCGC	2 cut(s)	6, 103
AspS9I	GGNCC	2 cut(s)	33, 331
AvaII	GGWCC	1 cut(s)	33
AxyI	CCTNAGG	1 cut(s)	312
BaeI	ACNNNNGTAYC	2 cut(s)	339, 372
Bbv12I	GWGCWC	1 cut(s)	44
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	129
BisI	GCNGC	1 cut(s)	117
BlsI	GCNGC	1 cut(s)	118
Bme18I	GGWCC	1 cut(s)	33
BmgT120I	GGNCC	2 cut(s)	33, 331
BmiI	GGNNCC	1 cut(s)	168
Bpu10I	CCTNAGC	1 cut(s)	387
BpuEI	CTTGAG	1 cut(s)	395
BsaJI	CCNNGG	4 cut(s)	23, 327, 334, 381
Bsc4I	CCNNNNNNNGG	2 cut(s)	24, 96
Bse21I	CCTNAGG	1 cut(s)	312
BseDI	CCNNGG	4 cut(s)	23, 327, 334, 381
BseLI	CCNNNNNNNGG	2 cut(s)	24, 96
BseMII	CTCAG	1 cut(s)	378
BseRI	GAGGAG	1 cut(s)	377
BseXI	GCAGC	1 cut(s)	128
Bsh1236I	CGCG	2 cut(s)	6, 103
BshFI	GGCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	44
BslFI	GGGAC	2 cut(s)	33, 252
BslI	CCNNNNNNNGG	2 cut(s)	24, 96
BsmFI	GGGAC	2 cut(s)	33, 252
BsnI	GGCC	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	297
Bsp19I	CCATGG	1 cut(s)	327
BspACI	CCGC	1 cut(s)	18
BspANI	GGCC	1 cut(s)	332
BspCNI	CTCAG	1 cut(s)	379
BspFNI	CGCG	2 cut(s)	6, 103
BspLI	GGNNCC	1 cut(s)	168
BspQI	GCTCTTC	1 cut(s)	106
BsrBI	CCGCTC	1 cut(s)	20
BssECI	CCNNGG	4 cut(s)	23, 327, 334, 381
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	3 cut(s)	23, 327, 334
Bst4CI	ACNGT	1 cut(s)	352
Bst6I	CTCTTC	2 cut(s)	106, 177
BstDEI	CTNAG	4 cut(s)	75, 147, 312, 387
BstDSI	CCRYGG	1 cut(s)	327
BstENI	CCTNNNNNAGG	1 cut(s)	94
BstFNI	CGCG	2 cut(s)	6, 103
BstHHI	GCGC	2 cut(s)	6, 103
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	2 cut(s)	314, 392
BstUI	CGCG	2 cut(s)	6, 103
BstV1I	GCAGC	1 cut(s)	128
Bsu36I	CCTNAGG	1 cut(s)	312
BsuRI	GGCC	1 cut(s)	332
BtgI	CCRYGG	1 cut(s)	327
CfoI	GCGC	2 cut(s)	6, 103
Cfr13I	GGNCC	2 cut(s)	33, 331
Csp6I	GTAC	2 cut(s)	339, 348
CviAII	CATG	1 cut(s)	328
CviJI	RGCY	7 cut(s)	74, 89, 161, 308, 332, 372, 386
CviKI_1	RGCY	7 cut(s)	74, 89, 161, 308, 332, 372, 386
CviQI	GTAC	2 cut(s)	339, 348
DdeI	CTNAG	4 cut(s)	75, 147, 312, 387
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
Eam1104I	CTCTTC	2 cut(s)	106, 177
EarI	CTCTTC	2 cut(s)	106, 177
Eco130I	CCWWGG	3 cut(s)	23, 327, 334
Eco47I	GGWCC	1 cut(s)	33
Eco81I	CCTNAGG	1 cut(s)	312
EcoNI	CCTNNNNNAGG	1 cut(s)	94
EcoT14I	CCWWGG	3 cut(s)	23, 327, 334
EcoT22I	ATGCAT	1 cut(s)	157
ErhI	CCWWGG	3 cut(s)	23, 327, 334
FaeI	CATG	1 cut(s)	331
FaiI	YATR	5 cut(s)	93, 153, 164, 329, 397
FaqI	GGGAC	2 cut(s)	33, 252
FatI	CATG	1 cut(s)	327
Fnu4HI	GCNGC	1 cut(s)	117
Fsp4HI	GCNGC	1 cut(s)	117
FspBI	CTAG	1 cut(s)	129
GlaI	GCGC	2 cut(s)	5, 102
GluI	GCNGC	1 cut(s)	117
HaeIII	GGCC	1 cut(s)	332
HhaI	GCGC	2 cut(s)	6, 103
Hin1II	CATG	1 cut(s)	331
Hin6I	GCGC	2 cut(s)	4, 101
HinP1I	GCGC	2 cut(s)	4, 101
HinfI	GANTC	4 cut(s)	125, 212, 323, 377
Hpy188I	TCNGA	2 cut(s)	58, 382
HpyCH4III	ACNGT	1 cut(s)	352
HpyCH4V	TGCA	2 cut(s)	155, 282
HpyF10VI	GCNNNNNNNGC	2 cut(s)	314, 392
HpyF3I	CTNAG	4 cut(s)	75, 147, 312, 387
Hsp92II	CATG	1 cut(s)	331
HspAI	GCGC	2 cut(s)	4, 101
Kzo9I	GATC	1 cut(s)	297
LguI	GCTCTTC	1 cut(s)	106
LmnI	GCTCC	3 cut(s)	25, 27, 313
LpnPI	CCDG	6 cut(s)	16, 99, 201, 225, 283, 330
Lsp1109I	GCAGC	1 cut(s)	128
MaeI	CTAG	1 cut(s)	129
MalI	GATC	1 cut(s)	299
MbiI	CCGCTC	1 cut(s)	20
MboI	GATC	1 cut(s)	297
MboII	GAAGA	4 cut(s)	123, 164, 301, 304
MhlI	GDGCHC	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	8 cut(s)	180, 186, 228, 254, 355, 358, 376, 382
Mph1103I	ATGCAT	1 cut(s)	157
MseI	TTAA	2 cut(s)	180, 207
MvnI	CGCG	2 cut(s)	6, 103
MwoI	GCNNNNNNNGC	2 cut(s)	314, 392
NcoI	CCATGG	1 cut(s)	327
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	1 cut(s)	331
NlaIV	GGNNCC	1 cut(s)	168
NsiI	ATGCAT	1 cut(s)	157
PciSI	GCTCTTC	1 cut(s)	106
PfeI	GAWTC	3 cut(s)	125, 212, 323
PkrI	GCNGC	1 cut(s)	118
PleI	GAGTC	1 cut(s)	385
PpsI	GAGTC	1 cut(s)	385
PshBI	ATTAAT	1 cut(s)	207
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	33, 331
RsaI	GTAC	2 cut(s)	340, 349
RsaNI	GTAC	2 cut(s)	339, 348
SapI	GCTCTTC	1 cut(s)	106
SaqAI	TTAA	2 cut(s)	180, 207
SatI	GCNGC	1 cut(s)	117
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	2 cut(s)	33, 331
SchI	GAGTC	1 cut(s)	386
SduI	GDGCHC	1 cut(s)	44
SetI	ASST	5 cut(s)	163, 239, 265, 310, 393
SinI	GGWCC	1 cut(s)	33
SmlI	CTYRAG	1 cut(s)	374
SmoI	CTYRAG	1 cut(s)	374
SsiI	CCGC	1 cut(s)	18
SspMI	CTAG	1 cut(s)	129
StyI	CCWWGG	3 cut(s)	23, 327, 334
TaaI	ACNGT	1 cut(s)	352
TfiI	GAWTC	3 cut(s)	125, 212, 323
Tru1I	TTAA	2 cut(s)	180, 207
Tru9I	TTAA	2 cut(s)	180, 207
TseI	GCWGC	1 cut(s)	116
VpaK11BI	GGWCC	1 cut(s)	33
VspI	ATTAAT	1 cut(s)	207
XagI	CCTNNNNNAGG	1 cut(s)	94
XspI	CTAG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.