Rmu_sc0000035.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000035.1
OG0000172
Physical Location & Seq
Forward (+)
41380 .. 42332
953 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000035.1_g000010.1.cds

Sequence Viewer

Length: 588 bp
atgtcttggatggagccaacctattattatatcaaattagcttacgtgagaaggaacgctgcgggaaggttcctattcatcttcagcaaccctggggtaattttacgaatcaaggaaggcggctcatggactttcaacagggctcacgaattcctgaatgactgcgatgggagatcttccatctccaacgtccccttggaccatatcaggatctggatccgaattaatggactgcccctggcttttcttacgcgggcaacaatgtggttgatcggagaaatgattggtacggtactggaaatggatcgacagggcttgtgggaggggcgcaaatggggcaacaccgttgcgcggagggggcgtgaatggtttgccttctataatgttccacgccaactcctcaactccatcatctcctggcctcttggagcccagtgttatggtggttacgatggaggaggcagcggcatatgtgacggggaagcgccggctagagaggaggaggaagggccgaagtccaagtgcacacgccatgcactttcgctggcctctataaagctggaagaggagagacatcgtttcttgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

195

Amino Acids

22.35

Weight (kDa)

8.96

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 253, 352
AciI CCGC 5 cut(s) 62, 120, 253, 352, 465
AclWI GGATC 4 cut(s) 211, 218, 224, 312
AcsI RAATTY 1 cut(s) 149
AcuI CTGAAG 1 cut(s) 67
AfaI GTAC 2 cut(s) 289, 294
AfiI CCNNNNNNNGG 1 cut(s) 351
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 3 cut(s) 91, 237, 416
AluBI AGCT 2 cut(s) 41, 559
AluI AGCT 2 cut(s) 41, 559
Alw21I GWGCWC 1 cut(s) 527
Alw26I GTCTC 1 cut(s) 565
Alw44I GTGCAC 1 cut(s) 523
AlwI GGATC 4 cut(s) 211, 218, 224, 312
AlwNI CAGNNNCTG 1 cut(s) 213
AoxI GGCC 3 cut(s) 419, 509, 546
ApaLI GTGCAC 1 cut(s) 523
ApeKI GCWGC 2 cut(s) 59, 462
ApoI RAATTY 1 cut(s) 149
AseI ATTAAT 1 cut(s) 225
AspLEI GCGC 3 cut(s) 330, 352, 487
AspS9I GGNCC 2 cut(s) 199, 509
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 527
BamHI GGATCC 1 cut(s) 216
BanII GRGCYC 2 cut(s) 145, 433
Bbv12I GWGCWC 1 cut(s) 527
BbvI GCAGC 2 cut(s) 46, 474
BccI CCATC 5 cut(s) 4, 161, 188, 416, 446
BciT130I CCWGG 3 cut(s) 93, 239, 418
BcoDI GTCTC 1 cut(s) 565
BfaI CTAG 1 cut(s) 492
BfoI RGCGCY 1 cut(s) 488
BglII AGATCT 1 cut(s) 173
BisI GCNGC 4 cut(s) 60, 121, 463, 466
BlsI GCNGC 4 cut(s) 61, 122, 464, 467
Bme1390I CCNGG 3 cut(s) 93, 239, 418
Bme18I GGWCC 1 cut(s) 199
BmgT120I GGNCC 2 cut(s) 199, 509
BmiI GGNNCC 4 cut(s) 15, 71, 218, 430
BmrFI CCNGG 3 cut(s) 93, 239, 418
BmrI ACTGGG 1 cut(s) 427
BmuI ACTGGG 1 cut(s) 427
BsaAI YACGTR 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 215
BsaJI CCNNGG 4 cut(s) 91, 92, 195, 237
BsaXI ACNNNNNCTCC 4 cut(s) 346, 376, 381, 411
Bsc4I CCNNNNNNNGG 1 cut(s) 351
Bse118I RCCGGY 1 cut(s) 487
Bse1I ACTGG 2 cut(s) 300, 433
Bse8I GATNNNNATC 1 cut(s) 215
BseBI CCWGG 3 cut(s) 93, 239, 418
BseDI CCNNGG 4 cut(s) 91, 92, 195, 237
BseGI GGATG 1 cut(s) 15
BseJI GATNNNNATC 1 cut(s) 215
BseLI CCNNNNNNNGG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 300, 433
BseRI GAGGAG 5 cut(s) 389, 471, 512, 515, 581
BseSI GKGCMC 1 cut(s) 527
BseXI GCAGC 2 cut(s) 46, 474
Bsh1236I CGCG 2 cut(s) 253, 352
BshFI GGCC 3 cut(s) 421, 511, 548
BsiHKAI GWGCWC 1 cut(s) 527
BsiSI CCGG 1 cut(s) 488
BslFI GGGAC 1 cut(s) 176
BslI CCNNNNNNNGG 1 cut(s) 351
BsmAI GTCTC 1 cut(s) 565
BsmFI GGGAC 1 cut(s) 176
BsnI GGCC 3 cut(s) 421, 511, 548
Bsp1286I GDGCHC 3 cut(s) 145, 433, 527
Bsp143I GATC 5 cut(s) 173, 210, 216, 270, 304
BspACI CCGC 5 cut(s) 62, 120, 253, 352, 465
BspANI GGCC 3 cut(s) 421, 511, 548
BspFNI CGCG 2 cut(s) 253, 352
BspLI GGNNCC 4 cut(s) 15, 71, 218, 430
BspPI GGATC 4 cut(s) 211, 218, 224, 312
BsrFI RCCGGY 1 cut(s) 487
BsrI ACTGG 2 cut(s) 300, 433
BssAI RCCGGY 1 cut(s) 487
BssECI CCNNGG 4 cut(s) 91, 92, 195, 237
BssMI GATC 5 cut(s) 173, 210, 216, 270, 304
BssT1I CCWWGG 1 cut(s) 195
Bst2UI CCWGG 3 cut(s) 93, 239, 418
Bst4CI ACNGT 2 cut(s) 292, 346
Bst6I CTCTTC 1 cut(s) 558
BstBAI YACGTR 1 cut(s) 46
BstC8I GCNNGC 3 cut(s) 255, 489, 546
BstF5I GGATG 1 cut(s) 15
BstFNI CGCG 2 cut(s) 253, 352
BstH2I RGCGCY 1 cut(s) 488
BstHHI GCGC 3 cut(s) 330, 352, 487
BstKTI GATC 5 cut(s) 176, 213, 219, 273, 307
BstMAI GTCTC 1 cut(s) 565
BstMBI GATC 5 cut(s) 173, 210, 216, 270, 304
BstMWI GCNNNNNNNGC 2 cut(s) 336, 358
BstNI CCWGG 3 cut(s) 93, 239, 418
BstSCI CCNGG 3 cut(s) 91, 237, 416
BstSLI GKGCMC 1 cut(s) 527
BstUI CGCG 2 cut(s) 253, 352
BstV1I GCAGC 2 cut(s) 46, 474
BstX2I RGATCY 3 cut(s) 173, 210, 216
BstXI CCANNNNNNTGG 1 cut(s) 440
BstYI RGATCY 3 cut(s) 173, 210, 216
BsuRI GGCC 3 cut(s) 421, 511, 548
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 1 cut(s) 15
BtsIMutI CAGTG 1 cut(s) 440
Cac8I GCNNGC 3 cut(s) 255, 489, 546
CaiI CAGNNNCTG 1 cut(s) 213
CfoI GCGC 3 cut(s) 330, 352, 487
Cfr10I RCCGGY 1 cut(s) 487
Cfr13I GGNCC 2 cut(s) 199, 509
Csp6I GTAC 2 cut(s) 288, 293
CviAII CATG 2 cut(s) 126, 533
CviQI GTAC 2 cut(s) 288, 293
DpnI GATC 5 cut(s) 175, 212, 218, 272, 306
DpnII GATC 5 cut(s) 173, 210, 216, 270, 304
Eam1104I CTCTTC 1 cut(s) 558
EarI CTCTTC 1 cut(s) 558
Eco130I CCWWGG 1 cut(s) 195
Eco24I GRGCYC 2 cut(s) 145, 433
Eco47I GGWCC 1 cut(s) 199
Eco57I CTGAAG 1 cut(s) 67
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 3 cut(s) 91, 237, 416
EcoT14I CCWWGG 1 cut(s) 195
EcoT38I GRGCYC 2 cut(s) 145, 433
ErhI CCWWGG 1 cut(s) 195
FaeI CATG 2 cut(s) 129, 536
FaiI YATR 9 cut(s) 30, 127, 204, 381, 441, 470, 472, 534, 554
FaqI GGGAC 1 cut(s) 176
FatI CATG 2 cut(s) 125, 532
FauI CCCGC 2 cut(s) 55, 246
FauNDI CATATG 1 cut(s) 470
Fnu4HI GCNGC 4 cut(s) 60, 121, 463, 466
FokI GGATG 1 cut(s) 22
FriOI GRGCYC 2 cut(s) 145, 433
Fsp4HI GCNGC 4 cut(s) 60, 121, 463, 466
FspBI CTAG 1 cut(s) 492
GlaI GCGC 3 cut(s) 329, 351, 486
GluI GCNGC 4 cut(s) 60, 121, 463, 466
HaeII RGCGCY 1 cut(s) 488
HaeIII GGCC 3 cut(s) 421, 511, 548
HapII CCGG 1 cut(s) 488
HhaI GCGC 3 cut(s) 330, 352, 487
Hin1II CATG 2 cut(s) 129, 536
Hin6I GCGC 3 cut(s) 328, 350, 485
HinP1I GCGC 3 cut(s) 328, 350, 485
HinfI GANTC 1 cut(s) 108
HpaII CCGG 1 cut(s) 488
Hpy166II GTNNAC 1 cut(s) 525
Hpy188I TCNGA 2 cut(s) 221, 275
Hpy188III TCNNGA 4 cut(s) 146, 154, 208, 214
Hpy8I GTNNAC 1 cut(s) 525
HpyAV CCTTC 5 cut(s) 45, 60, 110, 385, 500
HpyCH4III ACNGT 2 cut(s) 292, 346
HpyCH4IV ACGT 2 cut(s) 45, 189
HpyCH4V TGCA 2 cut(s) 525, 536
HpyF10VI GCNNNNNNNGC 2 cut(s) 336, 358
HpySE526I ACGT 2 cut(s) 45, 189
Hsp92II CATG 2 cut(s) 129, 536
HspAI GCGC 3 cut(s) 328, 350, 485
KroI GCCGGC 1 cut(s) 487
KroNI GCCGGC 1 cut(s) 489
Kzo9I GATC 5 cut(s) 173, 210, 216, 270, 304
LmnI GCTCC 2 cut(s) 13, 428
Lsp1109I GCAGC 2 cut(s) 46, 474
MaeI CTAG 1 cut(s) 492
MaeII ACGT 2 cut(s) 45, 189
MaeIII GTNAC 2 cut(s) 446, 473
MalI GATC 5 cut(s) 175, 212, 218, 272, 306
MboI GATC 5 cut(s) 173, 210, 216, 270, 304
MboII GAAGA 3 cut(s) 73, 168, 575
MflI RGATCY 3 cut(s) 173, 210, 216
MhlI GDGCHC 3 cut(s) 145, 433, 527
MluCI AATT 4 cut(s) 35, 99, 149, 222
MmeI TCCRAC 1 cut(s) 210
MroNI GCCGGC 1 cut(s) 487
MseI TTAA 1 cut(s) 225
MspA1I CMGCKG 1 cut(s) 465
MspI CCGG 1 cut(s) 488
MspR9I CCNGG 3 cut(s) 93, 239, 418
MvaI CCWGG 3 cut(s) 93, 239, 418
MvnI CGCG 2 cut(s) 253, 352
MwoI GCNNNNNNNGC 2 cut(s) 336, 358
NaeI GCCGGC 1 cut(s) 489
NdeI CATATG 1 cut(s) 470
NdeII GATC 5 cut(s) 173, 210, 216, 270, 304
NgoMIV GCCGGC 1 cut(s) 487
NlaIII CATG 2 cut(s) 129, 536
NlaIV GGNNCC 4 cut(s) 15, 71, 218, 430
NmuCI GTSAC 1 cut(s) 473
PasI CCCWGGG 1 cut(s) 92
PdiI GCCGGC 1 cut(s) 489
PfeI GAWTC 1 cut(s) 108
PkrI GCNGC 4 cut(s) 61, 122, 464, 467
Ppu21I YACGTR 1 cut(s) 46
PshBI ATTAAT 1 cut(s) 225
Psp6I CCWGG 3 cut(s) 91, 237, 416
PspGI CCWGG 3 cut(s) 91, 237, 416
PspN4I GGNNCC 4 cut(s) 15, 71, 218, 430
PspPI GGNCC 2 cut(s) 199, 509
PstNI CAGNNNCTG 1 cut(s) 213
PsuI RGATCY 3 cut(s) 173, 210, 216
RsaI GTAC 2 cut(s) 289, 294
RsaNI GTAC 2 cut(s) 288, 293
SaqAI TTAA 1 cut(s) 225
SatI GCNGC 4 cut(s) 60, 121, 463, 466
Sau3AI GATC 5 cut(s) 173, 210, 216, 270, 304
Sau96I GGNCC 2 cut(s) 199, 509
ScrFI CCNGG 3 cut(s) 93, 239, 418
SduI GDGCHC 3 cut(s) 145, 433, 527
SetI ASST 6 cut(s) 23, 43, 48, 71, 192, 561
SinI GGWCC 1 cut(s) 199
Sse9I AATT 4 cut(s) 35, 99, 149, 222
SsiI CCGC 5 cut(s) 62, 120, 253, 352, 465
SspMI CTAG 1 cut(s) 492
StyD4I CCNGG 3 cut(s) 91, 237, 416
StyI CCWWGG 1 cut(s) 195
TaaI ACNGT 2 cut(s) 292, 346
TaiI ACGT 2 cut(s) 48, 192
TaqI TCGA 1 cut(s) 307
TasI AATT 4 cut(s) 35, 99, 149, 222
TauI GCSGC 2 cut(s) 123, 468
TfiI GAWTC 1 cut(s) 108
Tru1I TTAA 1 cut(s) 225
Tru9I TTAA 1 cut(s) 225
TscAI CASTG 1 cut(s) 440
TseFI GTSAC 1 cut(s) 473
TseI GCWGC 2 cut(s) 59, 462
Tsp45I GTSAC 1 cut(s) 473
TspDTI ATGAA 1 cut(s) 67
TspRI CASTG 1 cut(s) 440
VneI GTGCAC 1 cut(s) 523
VpaK11BI GGWCC 1 cut(s) 199
VspI ATTAAT 1 cut(s) 225
XapI RAATTY 1 cut(s) 149
XcmI CCANNNNNNNNNTGG 2 cut(s) 193, 440
XspI CTAG 1 cut(s) 492
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.