Rmu_sc0007783.1_g000004

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007783.1
Physical Location & Seq
Forward (+)
9764 .. 12666
2903 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007783.1_g000004.1.cds

Sequence Viewer

Length: 1020 bp
atgactgccagacttgcaaccaaactgtcgctcaaggaaagggaagaactcgtggatctaggaaatcttagggtttcgggaaaagagtttttggcttcaacttctatctggaaggatgtcaagaaggcaatcaataaagcctcaaagctcagagaaagaacgagcatagacaaaactcatgagactccaacctttgttaagatgttgaaagagttagatgaaggcacctctgccatgtttgaatccttgttttcctttatagctgaagaggtggccagttccggttcacaagatggaggatgcataggctggagcggcgggagagaagccttgagggaactagatctgaatagaattcaagatgttgatgaacggaattcaaacacagtttggccctcattcagtcaatctgcagccggaaaatctaggtttgaagttctcttcagagggcctggtggatggcgatggtgcttgattcctttcggagtgttatgcgttcgatgtggcgtctggctgggactatggaggtccaaccaagaagtgatcgttttcccttttacgttcacccatgaacgtgataccgctcttgtgaagaagggcagtccttggggatttcagcaagccatgattctcttgaatgactacgagggcttctcgaatatttctgaggtaaaattggattttgtttggatatgggtaatgctgcagagaattcagccggatctgttgactgagcctacggttaggttggtgggcaggacgattggagaagtgctagaggtagaccatattgggttgcggtggggagaggttcgagtccggcttgtggtacctattaatgagccagtgcgattggatcgaagggttagggtttctccagttgatgtcctaacacttcgcttccgatatgagagtatgttgggccactgtcgatactgtaccatgctcaatcatggtgggcagcgttatccgagggaggcagagctagagatggagctcaaagaggagatgggggcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

339

Amino Acids

38.76

Weight (kDa)

6.98

Isoelectric Point (pI)

39.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 829
AccB1I GGYRCC 2 cut(s) 224, 829
AccBSI CCGCTC 2 cut(s) 315, 584
AccI GTMKAC 1 cut(s) 783
AciI CCGC 4 cut(s) 315, 318, 582, 799
AclWI GGATC 3 cut(s) 63, 729, 864
AcoI YGGCCR 1 cut(s) 273
AcsI RAATTY 3 cut(s) 354, 376, 711
AcuI CTGAAG 2 cut(s) 285, 427
AcyI GRCGYC 1 cut(s) 507
AfaI GTAC 2 cut(s) 831, 940
AfiI CCNNNNNNNGG 1 cut(s) 826
AgsI TTSAA 7 cut(s) 99, 208, 242, 359, 381, 434, 637
AjnI CCWGG 1 cut(s) 451
AluBI AGCT 4 cut(s) 148, 263, 985, 997
AluI AGCT 4 cut(s) 148, 263, 985, 997
Alw21I GWGCWC 1 cut(s) 999
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 3 cut(s) 63, 729, 864
AoxI GGCC 4 cut(s) 273, 392, 449, 922
ApeKI GCWGC 3 cut(s) 413, 703, 961
ApoI RAATTY 3 cut(s) 354, 376, 711
AseI ATTAAT 1 cut(s) 837
Asp718I GGTACC 1 cut(s) 829
AspS9I GGNCC 4 cut(s) 393, 449, 528, 922
AsuHPI GGTGA 1 cut(s) 556
AvaII GGWCC 1 cut(s) 528
BalI TGGCCA 1 cut(s) 275
BanI GGYRCC 2 cut(s) 224, 829
BanII GRGCYC 1 cut(s) 999
BauI CACGAG 1 cut(s) 50
Bbv12I GWGCWC 1 cut(s) 999
BbvI GCAGC 3 cut(s) 425, 690, 973
BccI CCATC 5 cut(s) 287, 453, 459, 985, 1003
BciT130I CCWGG 1 cut(s) 453
BcoDI GTCTC 1 cut(s) 176
BfaI CTAG 5 cut(s) 59, 341, 426, 776, 986
BfmI CTRYAG 2 cut(s) 411, 704
BglII AGATCT 1 cut(s) 343
BisI GCNGC 4 cut(s) 316, 414, 704, 962
BlsI GCNGC 4 cut(s) 317, 415, 705, 963
Bme1390I CCNGG 1 cut(s) 453
Bme18I GGWCC 1 cut(s) 528
BmgT120I GGNCC 4 cut(s) 393, 449, 528, 922
BmiI GGNNCC 2 cut(s) 226, 831
BmrFI CCNGG 1 cut(s) 453
BmsI GCATC 1 cut(s) 290
BplI GAGNNNNNCTC 2 cut(s) 638, 670
BpmI CTGGAG 2 cut(s) 331, 861
BpuEI CTTGAG 2 cut(s) 17, 352
BsaHI GRCGYC 1 cut(s) 507
BsaJI CCNNGG 2 cut(s) 605, 971
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 826
Bse1I ACTGG 3 cut(s) 276, 845, 878
BseBI CCWGG 1 cut(s) 453
BseDI CCNNGG 2 cut(s) 605, 971
BseGI GGATG 3 cut(s) 121, 305, 464
BseLI CCNNNNNNNGG 1 cut(s) 826
BseMII CTCAG 3 cut(s) 163, 657, 723
BseNI ACTGG 3 cut(s) 276, 845, 878
BseRI GAGGAG 1 cut(s) 1019
BseXI GCAGC 3 cut(s) 425, 690, 973
BseYI CCCAGC 1 cut(s) 514
BshFI GGCC 4 cut(s) 275, 394, 451, 924
BshNI GGYRCC 2 cut(s) 224, 829
BsiHKAI GWGCWC 1 cut(s) 999
BsiSI CCGG 4 cut(s) 282, 417, 719, 820
BslFI GGGAC 1 cut(s) 531
BslI CCNNNNNNNGG 1 cut(s) 826
BsmAI GTCTC 1 cut(s) 176
BsmFI GGGAC 1 cut(s) 531
BsnI GGCC 4 cut(s) 275, 394, 451, 924
Bsp1286I GDGCHC 1 cut(s) 999
Bsp143I GATC 5 cut(s) 55, 343, 543, 721, 856
BspACI CCGC 4 cut(s) 315, 318, 582, 799
BspANI GGCC 4 cut(s) 275, 394, 451, 924
BspCNI CTCAG 3 cut(s) 162, 658, 724
BspHI TCATGA 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 226, 831
BspMAI CTGCAG 2 cut(s) 415, 708
BspPI GGATC 3 cut(s) 63, 729, 864
BspT107I GGYRCC 2 cut(s) 224, 829
BsrBI CCGCTC 2 cut(s) 315, 584
BsrI ACTGG 3 cut(s) 276, 845, 878
BssECI CCNNGG 2 cut(s) 605, 971
BssMI GATC 5 cut(s) 55, 343, 543, 721, 856
BssNI GRCGYC 1 cut(s) 507
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 1 cut(s) 605
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 453
Bst4CI ACNGT 5 cut(s) 27, 388, 742, 929, 938
Bst6I CTCTTC 2 cut(s) 261, 446
BstACI GRCGYC 1 cut(s) 507
BstC8I GCNNGC 1 cut(s) 621
BstDEI CTNAG 4 cut(s) 68, 149, 666, 732
BstF5I GGATG 3 cut(s) 121, 305, 464
BstKTI GATC 5 cut(s) 58, 346, 546, 724, 859
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 5 cut(s) 55, 343, 543, 721, 856
BstMWI GCNNNNNNNGC 2 cut(s) 14, 315
BstNI CCWGG 1 cut(s) 453
BstSCI CCNGG 1 cut(s) 451
BstSFI CTRYAG 2 cut(s) 411, 704
BstV1I GCAGC 3 cut(s) 425, 690, 973
BstX2I RGATCY 3 cut(s) 55, 343, 721
BstYI RGATCY 3 cut(s) 55, 343, 721
BsuRI GGCC 4 cut(s) 275, 394, 451, 924
BtgZI GCGATG 1 cut(s) 478
BtsCI GGATG 3 cut(s) 121, 305, 464
BtsIMutI CAGTG 2 cut(s) 852, 925
Cac8I GCNNGC 1 cut(s) 621
CciI TCATGA 1 cut(s) 178
Cfr13I GGNCC 4 cut(s) 393, 449, 528, 922
CseI GACGC 1 cut(s) 496
Csp6I GTAC 2 cut(s) 830, 939
CspCI CAANNNNNGTGG 2 cut(s) 937, 972
CviAII CATG 6 cut(s) 179, 235, 569, 625, 943, 953
CviQI GTAC 2 cut(s) 830, 939
DdeI CTNAG 4 cut(s) 68, 149, 666, 732
DpnI GATC 5 cut(s) 57, 345, 545, 723, 858
DpnII GATC 5 cut(s) 55, 343, 543, 721, 856
EaeI YGGCCR 1 cut(s) 273
Eam1104I CTCTTC 2 cut(s) 261, 446
EarI CTCTTC 2 cut(s) 261, 446
Ecl136II GAGCTC 1 cut(s) 997
Eco130I CCWWGG 1 cut(s) 605
Eco24I GRGCYC 1 cut(s) 999
Eco47I GGWCC 1 cut(s) 528
Eco53kI GAGCTC 1 cut(s) 997
Eco57I CTGAAG 2 cut(s) 285, 427
EcoICRI GAGCTC 1 cut(s) 997
EcoO109I RGGNCCY 1 cut(s) 449
EcoRI GAATTC 3 cut(s) 354, 376, 711
EcoRII CCWGG 1 cut(s) 451
EcoT14I CCWWGG 1 cut(s) 605
EcoT22I ATGCAT 1 cut(s) 305
EcoT38I GRGCYC 1 cut(s) 999
ErhI CCWWGG 1 cut(s) 605
FaeI CATG 6 cut(s) 182, 238, 572, 628, 946, 956
FaqI GGGAC 1 cut(s) 531
FatI CATG 6 cut(s) 178, 234, 568, 624, 942, 952
FauI CCCGC 1 cut(s) 311
FblI GTMKAC 1 cut(s) 783
Fnu4HI GCNGC 4 cut(s) 316, 414, 704, 962
FokI GGATG 3 cut(s) 128, 312, 471
FriOI GRGCYC 1 cut(s) 999
Fsp4HI GCNGC 4 cut(s) 316, 414, 704, 962
FspBI CTAG 5 cut(s) 59, 341, 426, 776, 986
GluI GCNGC 4 cut(s) 316, 414, 704, 962
GsaI CCCAGC 1 cut(s) 518
GsuI CTGGAG 2 cut(s) 331, 861
HaeIII GGCC 4 cut(s) 275, 394, 451, 924
HapII CCGG 4 cut(s) 282, 417, 719, 820
HgaI GACGC 1 cut(s) 496
Hin1I GRCGYC 1 cut(s) 507
Hin1II CATG 6 cut(s) 182, 238, 572, 628, 946, 956
HincII GTYRAC 1 cut(s) 729
HindII GTYRAC 1 cut(s) 729
HinfI GANTC 5 cut(s) 184, 242, 475, 628, 816
HpaII CCGG 4 cut(s) 282, 417, 719, 820
HphI GGTGA 1 cut(s) 556
Hpy166II GTNNAC 4 cut(s) 287, 564, 729, 784
Hpy188I TCNGA 7 cut(s) 152, 348, 446, 485, 667, 905, 972
Hpy188III TCNNGA 7 cut(s) 78, 109, 121, 179, 359, 634, 655
Hpy8I GTNNAC 4 cut(s) 287, 564, 729, 784
HpyAV CCTTC 5 cut(s) 106, 118, 215, 589, 855
HpyCH4III ACNGT 5 cut(s) 27, 388, 742, 929, 938
HpyCH4IV ACGT 2 cut(s) 560, 574
HpyCH4V TGCA 4 cut(s) 17, 303, 413, 706
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 315
HpyF3I CTNAG 4 cut(s) 68, 149, 666, 732
HpySE526I ACGT 2 cut(s) 560, 574
Hsp92I GRCGYC 1 cut(s) 507
Hsp92II CATG 6 cut(s) 182, 238, 572, 628, 946, 956
KpnI GGTACC 1 cut(s) 833
Kzo9I GATC 5 cut(s) 55, 343, 543, 721, 856
LmnI GCTCC 2 cut(s) 312, 994
Lsp1109I GCAGC 3 cut(s) 425, 690, 973
LweI GCATC 1 cut(s) 290
MaeI CTAG 5 cut(s) 59, 341, 426, 776, 986
MaeII ACGT 2 cut(s) 560, 574
MalI GATC 5 cut(s) 57, 345, 545, 723, 858
MbiI CCGCTC 2 cut(s) 315, 584
MboI GATC 5 cut(s) 55, 343, 543, 721, 856
MboII GAAGA 4 cut(s) 56, 278, 433, 604
MflI RGATCY 3 cut(s) 55, 343, 721
MhlI GDGCHC 1 cut(s) 999
MlsI TGGCCA 1 cut(s) 275
MluCI AATT 4 cut(s) 354, 376, 674, 711
MluNI TGGCCA 1 cut(s) 275
MlyI GAGTC 2 cut(s) 178, 825
MmeI TCCRAC 2 cut(s) 212, 555
Mox20I TGGCCA 1 cut(s) 275
Mph1103I ATGCAT 1 cut(s) 305
MscI TGGCCA 1 cut(s) 275
MseI TTAA 2 cut(s) 198, 837
MslI CAYNNNNRTG 1 cut(s) 573
Msp20I TGGCCA 1 cut(s) 275
MspI CCGG 4 cut(s) 282, 417, 719, 820
MspR9I CCNGG 1 cut(s) 453
MvaI CCWGG 1 cut(s) 453
MwoI GCNNNNNNNGC 2 cut(s) 14, 315
NdeII GATC 5 cut(s) 55, 343, 543, 721, 856
NlaIII CATG 6 cut(s) 182, 238, 572, 628, 946, 956
NlaIV GGNNCC 2 cut(s) 226, 831
NsiI ATGCAT 1 cut(s) 305
PagI TCATGA 1 cut(s) 178
PfeI GAWTC 3 cut(s) 242, 475, 628
PkrI GCNGC 4 cut(s) 317, 415, 705, 963
PleI GAGTC 2 cut(s) 178, 824
PpsI GAGTC 2 cut(s) 178, 824
PshBI ATTAAT 1 cut(s) 837
Psp124BI GAGCTC 1 cut(s) 999
Psp6I CCWGG 1 cut(s) 451
PspFI CCCAGC 1 cut(s) 514
PspGI CCWGG 1 cut(s) 451
PspN4I GGNNCC 2 cut(s) 226, 831
PspPI GGNCC 4 cut(s) 393, 449, 528, 922
PstI CTGCAG 2 cut(s) 415, 708
PsuI RGATCY 3 cut(s) 55, 343, 721
RsaI GTAC 2 cut(s) 831, 940
RsaNI GTAC 2 cut(s) 830, 939
RseI CAYNNNNRTG 1 cut(s) 573
SacI GAGCTC 1 cut(s) 999
SaqAI TTAA 2 cut(s) 198, 837
SatI GCNGC 4 cut(s) 316, 414, 704, 962
Sau3AI GATC 5 cut(s) 55, 343, 543, 721, 856
Sau96I GGNCC 4 cut(s) 393, 449, 528, 922
SchI GAGTC 2 cut(s) 178, 825
ScrFI CCNGG 1 cut(s) 453
SduI GDGCHC 1 cut(s) 999
SfaNI GCATC 1 cut(s) 290
SfcI CTRYAG 2 cut(s) 411, 704
SinI GGWCC 1 cut(s) 528
SmiMI CAYNNNNRTG 1 cut(s) 573
SmlI CTYRAG 2 cut(s) 32, 331
SmoI CTYRAG 2 cut(s) 32, 331
Sse9I AATT 4 cut(s) 354, 376, 674, 711
SsiI CCGC 4 cut(s) 315, 318, 582, 799
SspI AATATT 1 cut(s) 661
SspMI CTAG 5 cut(s) 59, 341, 426, 776, 986
SstI GAGCTC 1 cut(s) 999
StyD4I CCNGG 1 cut(s) 451
StyI CCWWGG 1 cut(s) 605
TaaI ACNGT 5 cut(s) 27, 388, 742, 929, 938
TaiI ACGT 2 cut(s) 563, 577
TaqI TCGA 5 cut(s) 499, 656, 814, 859, 931
TasI AATT 4 cut(s) 354, 376, 674, 711
TauI GCSGC 1 cut(s) 318
TfiI GAWTC 3 cut(s) 242, 475, 628
Tru1I TTAA 2 cut(s) 198, 837
Tru9I TTAA 2 cut(s) 198, 837
TscAI CASTG 2 cut(s) 852, 932
TseI GCWGC 3 cut(s) 413, 703, 961
TspDTI ATGAA 3 cut(s) 234, 384, 585
TspGWI ACGGA 1 cut(s) 388
TspRI CASTG 2 cut(s) 852, 932
VpaK11BI GGWCC 1 cut(s) 528
VspI ATTAAT 1 cut(s) 837
XapI RAATTY 3 cut(s) 354, 376, 711
XmiI GTMKAC 1 cut(s) 783
XspI CTAG 5 cut(s) 59, 341, 426, 776, 986
Zsp2I ATGCAT 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.