Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc65I | GGTACC | 1 cut(s) | 829 |
| AccB1I | GGYRCC | 2 cut(s) | 224, 829 |
| AccBSI | CCGCTC | 2 cut(s) | 315, 584 |
| AccI | GTMKAC | 1 cut(s) | 783 |
| AciI | CCGC | 4 cut(s) | 315, 318, 582, 799 |
| AclWI | GGATC | 3 cut(s) | 63, 729, 864 |
| AcoI | YGGCCR | 1 cut(s) | 273 |
| AcsI | RAATTY | 3 cut(s) | 354, 376, 711 |
| AcuI | CTGAAG | 2 cut(s) | 285, 427 |
| AcyI | GRCGYC | 1 cut(s) | 507 |
| AfaI | GTAC | 2 cut(s) | 831, 940 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 826 |
| AgsI | TTSAA | 7 cut(s) | 99, 208, 242, 359, 381, 434, 637 |
| AjnI | CCWGG | 1 cut(s) | 451 |
| AluBI | AGCT | 4 cut(s) | 148, 263, 985, 997 |
| AluI | AGCT | 4 cut(s) | 148, 263, 985, 997 |
| Alw21I | GWGCWC | 1 cut(s) | 999 |
| Alw26I | GTCTC | 1 cut(s) | 176 |
| AlwI | GGATC | 3 cut(s) | 63, 729, 864 |
| AoxI | GGCC | 4 cut(s) | 273, 392, 449, 922 |
| ApeKI | GCWGC | 3 cut(s) | 413, 703, 961 |
| ApoI | RAATTY | 3 cut(s) | 354, 376, 711 |
| AseI | ATTAAT | 1 cut(s) | 837 |
| Asp718I | GGTACC | 1 cut(s) | 829 |
| AspS9I | GGNCC | 4 cut(s) | 393, 449, 528, 922 |
| AsuHPI | GGTGA | 1 cut(s) | 556 |
| AvaII | GGWCC | 1 cut(s) | 528 |
| BalI | TGGCCA | 1 cut(s) | 275 |
| BanI | GGYRCC | 2 cut(s) | 224, 829 |
| BanII | GRGCYC | 1 cut(s) | 999 |
| BauI | CACGAG | 1 cut(s) | 50 |
| Bbv12I | GWGCWC | 1 cut(s) | 999 |
| BbvI | GCAGC | 3 cut(s) | 425, 690, 973 |
| BccI | CCATC | 5 cut(s) | 287, 453, 459, 985, 1003 |
| BciT130I | CCWGG | 1 cut(s) | 453 |
| BcoDI | GTCTC | 1 cut(s) | 176 |
| BfaI | CTAG | 5 cut(s) | 59, 341, 426, 776, 986 |
| BfmI | CTRYAG | 2 cut(s) | 411, 704 |
| BglII | AGATCT | 1 cut(s) | 343 |
| BisI | GCNGC | 4 cut(s) | 316, 414, 704, 962 |
| BlsI | GCNGC | 4 cut(s) | 317, 415, 705, 963 |
| Bme1390I | CCNGG | 1 cut(s) | 453 |
| Bme18I | GGWCC | 1 cut(s) | 528 |
| BmgT120I | GGNCC | 4 cut(s) | 393, 449, 528, 922 |
| BmiI | GGNNCC | 2 cut(s) | 226, 831 |
| BmrFI | CCNGG | 1 cut(s) | 453 |
| BmsI | GCATC | 1 cut(s) | 290 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 638, 670 |
| BpmI | CTGGAG | 2 cut(s) | 331, 861 |
| BpuEI | CTTGAG | 2 cut(s) | 17, 352 |
| BsaHI | GRCGYC | 1 cut(s) | 507 |
| BsaJI | CCNNGG | 2 cut(s) | 605, 971 |
| BsaWI | WCCGGW | 1 cut(s) | 281 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 826 |
| Bse1I | ACTGG | 3 cut(s) | 276, 845, 878 |
| BseBI | CCWGG | 1 cut(s) | 453 |
| BseDI | CCNNGG | 2 cut(s) | 605, 971 |
| BseGI | GGATG | 3 cut(s) | 121, 305, 464 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 826 |
| BseMII | CTCAG | 3 cut(s) | 163, 657, 723 |
| BseNI | ACTGG | 3 cut(s) | 276, 845, 878 |
| BseRI | GAGGAG | 1 cut(s) | 1019 |
| BseXI | GCAGC | 3 cut(s) | 425, 690, 973 |
| BseYI | CCCAGC | 1 cut(s) | 514 |
| BshFI | GGCC | 4 cut(s) | 275, 394, 451, 924 |
| BshNI | GGYRCC | 2 cut(s) | 224, 829 |
| BsiHKAI | GWGCWC | 1 cut(s) | 999 |
| BsiSI | CCGG | 4 cut(s) | 282, 417, 719, 820 |
| BslFI | GGGAC | 1 cut(s) | 531 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 826 |
| BsmAI | GTCTC | 1 cut(s) | 176 |
| BsmFI | GGGAC | 1 cut(s) | 531 |
| BsnI | GGCC | 4 cut(s) | 275, 394, 451, 924 |
| Bsp1286I | GDGCHC | 1 cut(s) | 999 |
| Bsp143I | GATC | 5 cut(s) | 55, 343, 543, 721, 856 |
| BspACI | CCGC | 4 cut(s) | 315, 318, 582, 799 |
| BspANI | GGCC | 4 cut(s) | 275, 394, 451, 924 |
| BspCNI | CTCAG | 3 cut(s) | 162, 658, 724 |
| BspHI | TCATGA | 1 cut(s) | 178 |
| BspLI | GGNNCC | 2 cut(s) | 226, 831 |
| BspMAI | CTGCAG | 2 cut(s) | 415, 708 |
| BspPI | GGATC | 3 cut(s) | 63, 729, 864 |
| BspT107I | GGYRCC | 2 cut(s) | 224, 829 |
| BsrBI | CCGCTC | 2 cut(s) | 315, 584 |
| BsrI | ACTGG | 3 cut(s) | 276, 845, 878 |
| BssECI | CCNNGG | 2 cut(s) | 605, 971 |
| BssMI | GATC | 5 cut(s) | 55, 343, 543, 721, 856 |
| BssNI | GRCGYC | 1 cut(s) | 507 |
| BssSI | CACGAG | 1 cut(s) | 50 |
| BssT1I | CCWWGG | 1 cut(s) | 605 |
| Bst2BI | CACGAG | 1 cut(s) | 50 |
| Bst2UI | CCWGG | 1 cut(s) | 453 |
| Bst4CI | ACNGT | 5 cut(s) | 27, 388, 742, 929, 938 |
| Bst6I | CTCTTC | 2 cut(s) | 261, 446 |
| BstACI | GRCGYC | 1 cut(s) | 507 |
| BstC8I | GCNNGC | 1 cut(s) | 621 |
| BstDEI | CTNAG | 4 cut(s) | 68, 149, 666, 732 |
| BstF5I | GGATG | 3 cut(s) | 121, 305, 464 |
| BstKTI | GATC | 5 cut(s) | 58, 346, 546, 724, 859 |
| BstMAI | GTCTC | 1 cut(s) | 176 |
| BstMBI | GATC | 5 cut(s) | 55, 343, 543, 721, 856 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 14, 315 |
| BstNI | CCWGG | 1 cut(s) | 453 |
| BstSCI | CCNGG | 1 cut(s) | 451 |
| BstSFI | CTRYAG | 2 cut(s) | 411, 704 |
| BstV1I | GCAGC | 3 cut(s) | 425, 690, 973 |
| BstX2I | RGATCY | 3 cut(s) | 55, 343, 721 |
| BstYI | RGATCY | 3 cut(s) | 55, 343, 721 |
| BsuRI | GGCC | 4 cut(s) | 275, 394, 451, 924 |
| BtgZI | GCGATG | 1 cut(s) | 478 |
| BtsCI | GGATG | 3 cut(s) | 121, 305, 464 |
| BtsIMutI | CAGTG | 2 cut(s) | 852, 925 |
| Cac8I | GCNNGC | 1 cut(s) | 621 |
| CciI | TCATGA | 1 cut(s) | 178 |
| Cfr13I | GGNCC | 4 cut(s) | 393, 449, 528, 922 |
| CseI | GACGC | 1 cut(s) | 496 |
| Csp6I | GTAC | 2 cut(s) | 830, 939 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 937, 972 |
| CviAII | CATG | 6 cut(s) | 179, 235, 569, 625, 943, 953 |
| CviQI | GTAC | 2 cut(s) | 830, 939 |
| DdeI | CTNAG | 4 cut(s) | 68, 149, 666, 732 |
| DpnI | GATC | 5 cut(s) | 57, 345, 545, 723, 858 |
| DpnII | GATC | 5 cut(s) | 55, 343, 543, 721, 856 |
| EaeI | YGGCCR | 1 cut(s) | 273 |
| Eam1104I | CTCTTC | 2 cut(s) | 261, 446 |
| EarI | CTCTTC | 2 cut(s) | 261, 446 |
| Ecl136II | GAGCTC | 1 cut(s) | 997 |
| Eco130I | CCWWGG | 1 cut(s) | 605 |
| Eco24I | GRGCYC | 1 cut(s) | 999 |
| Eco47I | GGWCC | 1 cut(s) | 528 |
| Eco53kI | GAGCTC | 1 cut(s) | 997 |
| Eco57I | CTGAAG | 2 cut(s) | 285, 427 |
| EcoICRI | GAGCTC | 1 cut(s) | 997 |
| EcoO109I | RGGNCCY | 1 cut(s) | 449 |
| EcoRI | GAATTC | 3 cut(s) | 354, 376, 711 |
| EcoRII | CCWGG | 1 cut(s) | 451 |
| EcoT14I | CCWWGG | 1 cut(s) | 605 |
| EcoT22I | ATGCAT | 1 cut(s) | 305 |
| EcoT38I | GRGCYC | 1 cut(s) | 999 |
| ErhI | CCWWGG | 1 cut(s) | 605 |
| FaeI | CATG | 6 cut(s) | 182, 238, 572, 628, 946, 956 |
| FaqI | GGGAC | 1 cut(s) | 531 |
| FatI | CATG | 6 cut(s) | 178, 234, 568, 624, 942, 952 |
| FauI | CCCGC | 1 cut(s) | 311 |
| FblI | GTMKAC | 1 cut(s) | 783 |
| Fnu4HI | GCNGC | 4 cut(s) | 316, 414, 704, 962 |
| FokI | GGATG | 3 cut(s) | 128, 312, 471 |
| FriOI | GRGCYC | 1 cut(s) | 999 |
| Fsp4HI | GCNGC | 4 cut(s) | 316, 414, 704, 962 |
| FspBI | CTAG | 5 cut(s) | 59, 341, 426, 776, 986 |
| GluI | GCNGC | 4 cut(s) | 316, 414, 704, 962 |
| GsaI | CCCAGC | 1 cut(s) | 518 |
| GsuI | CTGGAG | 2 cut(s) | 331, 861 |
| HaeIII | GGCC | 4 cut(s) | 275, 394, 451, 924 |
| HapII | CCGG | 4 cut(s) | 282, 417, 719, 820 |
| HgaI | GACGC | 1 cut(s) | 496 |
| Hin1I | GRCGYC | 1 cut(s) | 507 |
| Hin1II | CATG | 6 cut(s) | 182, 238, 572, 628, 946, 956 |
| HincII | GTYRAC | 1 cut(s) | 729 |
| HindII | GTYRAC | 1 cut(s) | 729 |
| HinfI | GANTC | 5 cut(s) | 184, 242, 475, 628, 816 |
| HpaII | CCGG | 4 cut(s) | 282, 417, 719, 820 |
| HphI | GGTGA | 1 cut(s) | 556 |
| Hpy166II | GTNNAC | 4 cut(s) | 287, 564, 729, 784 |
| Hpy188I | TCNGA | 7 cut(s) | 152, 348, 446, 485, 667, 905, 972 |
| Hpy188III | TCNNGA | 7 cut(s) | 78, 109, 121, 179, 359, 634, 655 |
| Hpy8I | GTNNAC | 4 cut(s) | 287, 564, 729, 784 |
| HpyAV | CCTTC | 5 cut(s) | 106, 118, 215, 589, 855 |
| HpyCH4III | ACNGT | 5 cut(s) | 27, 388, 742, 929, 938 |
| HpyCH4IV | ACGT | 2 cut(s) | 560, 574 |
| HpyCH4V | TGCA | 4 cut(s) | 17, 303, 413, 706 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 14, 315 |
| HpyF3I | CTNAG | 4 cut(s) | 68, 149, 666, 732 |
| HpySE526I | ACGT | 2 cut(s) | 560, 574 |
| Hsp92I | GRCGYC | 1 cut(s) | 507 |
| Hsp92II | CATG | 6 cut(s) | 182, 238, 572, 628, 946, 956 |
| KpnI | GGTACC | 1 cut(s) | 833 |
| Kzo9I | GATC | 5 cut(s) | 55, 343, 543, 721, 856 |
| LmnI | GCTCC | 2 cut(s) | 312, 994 |
| Lsp1109I | GCAGC | 3 cut(s) | 425, 690, 973 |
| LweI | GCATC | 1 cut(s) | 290 |
| MaeI | CTAG | 5 cut(s) | 59, 341, 426, 776, 986 |
| MaeII | ACGT | 2 cut(s) | 560, 574 |
| MalI | GATC | 5 cut(s) | 57, 345, 545, 723, 858 |
| MbiI | CCGCTC | 2 cut(s) | 315, 584 |
| MboI | GATC | 5 cut(s) | 55, 343, 543, 721, 856 |
| MboII | GAAGA | 4 cut(s) | 56, 278, 433, 604 |
| MflI | RGATCY | 3 cut(s) | 55, 343, 721 |
| MhlI | GDGCHC | 1 cut(s) | 999 |
| MlsI | TGGCCA | 1 cut(s) | 275 |
| MluCI | AATT | 4 cut(s) | 354, 376, 674, 711 |
| MluNI | TGGCCA | 1 cut(s) | 275 |
| MlyI | GAGTC | 2 cut(s) | 178, 825 |
| MmeI | TCCRAC | 2 cut(s) | 212, 555 |
| Mox20I | TGGCCA | 1 cut(s) | 275 |
| Mph1103I | ATGCAT | 1 cut(s) | 305 |
| MscI | TGGCCA | 1 cut(s) | 275 |
| MseI | TTAA | 2 cut(s) | 198, 837 |
| MslI | CAYNNNNRTG | 1 cut(s) | 573 |
| Msp20I | TGGCCA | 1 cut(s) | 275 |
| MspI | CCGG | 4 cut(s) | 282, 417, 719, 820 |
| MspR9I | CCNGG | 1 cut(s) | 453 |
| MvaI | CCWGG | 1 cut(s) | 453 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 14, 315 |
| NdeII | GATC | 5 cut(s) | 55, 343, 543, 721, 856 |
| NlaIII | CATG | 6 cut(s) | 182, 238, 572, 628, 946, 956 |
| NlaIV | GGNNCC | 2 cut(s) | 226, 831 |
| NsiI | ATGCAT | 1 cut(s) | 305 |
| PagI | TCATGA | 1 cut(s) | 178 |
| PfeI | GAWTC | 3 cut(s) | 242, 475, 628 |
| PkrI | GCNGC | 4 cut(s) | 317, 415, 705, 963 |
| PleI | GAGTC | 2 cut(s) | 178, 824 |
| PpsI | GAGTC | 2 cut(s) | 178, 824 |
| PshBI | ATTAAT | 1 cut(s) | 837 |
| Psp124BI | GAGCTC | 1 cut(s) | 999 |
| Psp6I | CCWGG | 1 cut(s) | 451 |
| PspFI | CCCAGC | 1 cut(s) | 514 |
| PspGI | CCWGG | 1 cut(s) | 451 |
| PspN4I | GGNNCC | 2 cut(s) | 226, 831 |
| PspPI | GGNCC | 4 cut(s) | 393, 449, 528, 922 |
| PstI | CTGCAG | 2 cut(s) | 415, 708 |
| PsuI | RGATCY | 3 cut(s) | 55, 343, 721 |
| RsaI | GTAC | 2 cut(s) | 831, 940 |
| RsaNI | GTAC | 2 cut(s) | 830, 939 |
| RseI | CAYNNNNRTG | 1 cut(s) | 573 |
| SacI | GAGCTC | 1 cut(s) | 999 |
| SaqAI | TTAA | 2 cut(s) | 198, 837 |
| SatI | GCNGC | 4 cut(s) | 316, 414, 704, 962 |
| Sau3AI | GATC | 5 cut(s) | 55, 343, 543, 721, 856 |
| Sau96I | GGNCC | 4 cut(s) | 393, 449, 528, 922 |
| SchI | GAGTC | 2 cut(s) | 178, 825 |
| ScrFI | CCNGG | 1 cut(s) | 453 |
| SduI | GDGCHC | 1 cut(s) | 999 |
| SfaNI | GCATC | 1 cut(s) | 290 |
| SfcI | CTRYAG | 2 cut(s) | 411, 704 |
| SinI | GGWCC | 1 cut(s) | 528 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 573 |
| SmlI | CTYRAG | 2 cut(s) | 32, 331 |
| SmoI | CTYRAG | 2 cut(s) | 32, 331 |
| Sse9I | AATT | 4 cut(s) | 354, 376, 674, 711 |
| SsiI | CCGC | 4 cut(s) | 315, 318, 582, 799 |
| SspI | AATATT | 1 cut(s) | 661 |
| SspMI | CTAG | 5 cut(s) | 59, 341, 426, 776, 986 |
| SstI | GAGCTC | 1 cut(s) | 999 |
| StyD4I | CCNGG | 1 cut(s) | 451 |
| StyI | CCWWGG | 1 cut(s) | 605 |
| TaaI | ACNGT | 5 cut(s) | 27, 388, 742, 929, 938 |
| TaiI | ACGT | 2 cut(s) | 563, 577 |
| TaqI | TCGA | 5 cut(s) | 499, 656, 814, 859, 931 |
| TasI | AATT | 4 cut(s) | 354, 376, 674, 711 |
| TauI | GCSGC | 1 cut(s) | 318 |
| TfiI | GAWTC | 3 cut(s) | 242, 475, 628 |
| Tru1I | TTAA | 2 cut(s) | 198, 837 |
| Tru9I | TTAA | 2 cut(s) | 198, 837 |
| TscAI | CASTG | 2 cut(s) | 852, 932 |
| TseI | GCWGC | 3 cut(s) | 413, 703, 961 |
| TspDTI | ATGAA | 3 cut(s) | 234, 384, 585 |
| TspGWI | ACGGA | 1 cut(s) | 388 |
| TspRI | CASTG | 2 cut(s) | 852, 932 |
| VpaK11BI | GGWCC | 1 cut(s) | 528 |
| VspI | ATTAAT | 1 cut(s) | 837 |
| XapI | RAATTY | 3 cut(s) | 354, 376, 711 |
| XmiI | GTMKAC | 1 cut(s) | 783 |
| XspI | CTAG | 5 cut(s) | 59, 341, 426, 776, 986 |
| Zsp2I | ATGCAT | 1 cut(s) | 305 |