Rmu_sc0011680.1_g000013

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0011680.1
OG0000172
Physical Location & Seq
Reverse (-)
57723 .. 58952
1230 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0011680.1_g000013.1.cds

Sequence Viewer

Length: 1230 bp
atggctgcagcgatcgcatccatgactgccagacttgcgactaaactgtcgctcaaggagggagaagaaccagttgatttggggaatctccgagttcaggggaaagagtttttggctcggaatttctatttggtaggaaggctcaatacttgcagggggctgatgctggattcattccggagcgcggtaagatctatgtggaggttgactggaaccgtggaggtacaaccaaggggtgaccgttttctgtttacattcacccatgacagggatgttgctagagtaaagaagggaggaccgtggggtttccaacgtgccatgattctcctgaatgactacgatgggttttcggagctctctgcagtgaggttggattttgtttggatctgggttacacttgatggcatacctccgggtattttgacagaacctaccgtccggttggttggtgggacaattggtgaggtgctggaggtggatcgtccggcgctgcgtaggggcgatgctcaagttaggcttgttctatccatccatgatccggtgcgtctcgaccgtagggttagggtttctccctctgacatcctaaccctaagattcaggtatgaaaggctccttgggcgctgccactcctgtgctatgctgaatcatggtggccaacgatgccctagggtggacgagttggcagctgatgctggggcggagcagggatcacaaacggctggtggaccgatcgttccagcccttgtctttagggcaaacgttcagccctccatctcttctccattgatctctactttcaaggtccctggcttgtcgaagaagaaaccggtccagattcgtgagcttcctgcgcttgcgttgtctggtactgagggtacctccacccaaactcaagtggtggggatgcgccggcccagggctgaggatgctcctgcggatggtaagcgagccaagcatggcttggctttggcgccggtaaccctgcatccggaaaatcttgggttcgagttttctgatgcaggtttggtaggtgggaagctgtctcaaggccctaaggtctacaagaagaagggcaggcctcggggttcgcgaaacaaagtcaaagcggcatcggtgtcagccaccgtggatgactctgggtctatggagtcggggccccttgatggtggttctgttggcatgcctgagaagcctaatgggctggctaagcctgtttcccagtccgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

409

Amino Acids

44.16

Weight (kDa)

10.0

Isoelectric Point (pI)

35.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
Acc36I ACCTGC 1 cut(s) 1010
Acc65I GGTACC 1 cut(s) 875
AccB1I GGYRCC 2 cut(s) 875, 970
AccI GTMKAC 1 cut(s) 1059
AccII CGCG 2 cut(s) 185, 1090
AccIII TCCGGA 2 cut(s) 177, 988
AciI CCGC 4 cut(s) 185, 698, 935, 1106
AclI AACGTT 1 cut(s) 759
AclWI GGATC 4 cut(s) 392, 486, 530, 715
AcoI YGGCCR 1 cut(s) 652
AcsI RAATTY 1 cut(s) 121
AcyI GRCGYC 1 cut(s) 971
AfaI GTAC 3 cut(s) 225, 868, 877
AgeI ACCGGT 1 cut(s) 826
AgsI TTSAA 1 cut(s) 799
AhdI GACNNNNNGTC 1 cut(s) 1138
AjnI CCWGG 2 cut(s) 805, 914
AjuI GAANNNNNNNTTGG 6 cut(s) 95, 113, 127, 145, 597, 629
AleI CACNNNNGTG 1 cut(s) 630
AloI GAACNNNNNNTCC 4 cut(s) 420, 452, 717, 749
AluBI AGCT 4 cut(s) 355, 686, 844, 1039
AluI AGCT 4 cut(s) 355, 686, 844, 1039
Alw21I GWGCWC 1 cut(s) 357
Alw26I GTCTC 2 cut(s) 551, 1047
AlwI GGATC 4 cut(s) 392, 486, 530, 715
Ama87I CYCGRG 1 cut(s) 1080
Aor13HI TCCGGA 2 cut(s) 177, 988
AoxI GGCC 5 cut(s) 652, 911, 1048, 1076, 1154
ApaI GGGCCC 1 cut(s) 1158
ApeKI GCWGC 5 cut(s) 5, 8, 490, 621, 683
ApoI RAATTY 1 cut(s) 121
AsiGI ACCGGT 1 cut(s) 826
AsiSI GCGATCGC 1 cut(s) 15
Asp718I GGTACC 1 cut(s) 875
AspA2I CCTAGG 1 cut(s) 665
AspLEI GCGC 6 cut(s) 185, 490, 621, 853, 909, 973
AspS9I GGNCC 8 cut(s) 296, 725, 802, 829, 912, 1049, 1154, 1155
AsuC2I CCSGG 2 cut(s) 414, 1225
AsuHPI GGTGA 3 cut(s) 248, 250, 473
AvaI CYCGRG 1 cut(s) 1080
AvaII GGWCC 4 cut(s) 296, 725, 802, 829
AvrII CCTAGG 1 cut(s) 665
AxyI CCTNAGG 1 cut(s) 1053
BaeGI GKGCMC 1 cut(s) 1158
BalI TGGCCA 1 cut(s) 654
BanI GGYRCC 2 cut(s) 875, 970
BanII GRGCYC 2 cut(s) 357, 1158
BarI GAAGNNNNNNTAC 2 cut(s) 130, 162
Bbv12I GWGCWC 1 cut(s) 357
BbvCI CCTCAGC 1 cut(s) 921
BbvI GCAGC 4 cut(s) 20, 477, 608, 695
BccI CCATC 6 cut(s) 335, 395, 536, 779, 932, 1157
BceAI ACGGC 1 cut(s) 732
BciT130I CCWGG 2 cut(s) 807, 916
BcnI CCSGG 2 cut(s) 414, 1225
BcoDI GTCTC 2 cut(s) 551, 1047
BfaI CTAG 2 cut(s) 279, 666
BfmI CTRYAG 2 cut(s) 6, 360
BfoI RGCGCY 3 cut(s) 491, 622, 974
BfuAI ACCTGC 1 cut(s) 1010
BglI GCCNNNNNGGC 1 cut(s) 1198
BglII AGATCT 1 cut(s) 191
BisI GCNGC 6 cut(s) 6, 9, 491, 622, 684, 1107
BlnI CCTAGG 1 cut(s) 665
BlpI GCTNAGC 1 cut(s) 1206
BlsI GCNGC 6 cut(s) 7, 10, 492, 623, 685, 1108
Bme1390I CCNGG 4 cut(s) 414, 807, 916, 1225
Bme18I GGWCC 4 cut(s) 296, 725, 802, 829
BmeRI GACNNNNNGTC 1 cut(s) 1138
BmeT110I CYCGRG 1 cut(s) 1080
BmgT120I GGNCC 8 cut(s) 296, 725, 802, 829, 912, 1049, 1154, 1155
BmiI GGNNCC 8 cut(s) 214, 611, 804, 877, 972, 1155, 1156, 1157
BmrFI CCNGG 4 cut(s) 414, 807, 916, 1225
BmrI ACTGGG 1 cut(s) 1213
BmuI ACTGGG 1 cut(s) 1213
BplI GAGNNNNNCTC 2 cut(s) 863, 895
BpmI CTGGAG 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 921
Bpu1102I GCTNAGC 1 cut(s) 1206
BpuEI CTTGAG 4 cut(s) 38, 492, 876, 1029
BpuMI CCSGG 2 cut(s) 414, 1225
BsaHI GRCGYC 1 cut(s) 971
BsaWI WCCGGW 5 cut(s) 177, 438, 538, 826, 988
Bse118I RCCGGY 3 cut(s) 826, 909, 973
Bse1I ACTGG 3 cut(s) 71, 214, 1219
Bse21I CCTNAGG 1 cut(s) 1053
BseAI TCCGGA 2 cut(s) 177, 988
BseBI CCWGG 2 cut(s) 807, 916
BseGI GGATG 9 cut(s) 17, 277, 528, 579, 909, 931, 943, 985, 1135
BseMII CTCAG 3 cut(s) 861, 912, 1176
BseNI ACTGG 3 cut(s) 71, 214, 1219
BseSI GKGCMC 1 cut(s) 1158
BseXI GCAGC 4 cut(s) 20, 477, 608, 695
BseYI CCCAGC 1 cut(s) 692
Bsh1236I CGCG 2 cut(s) 185, 1090
Bsh1285I CGRYCG 3 cut(s) 15, 553, 732
BshFI GGCC 5 cut(s) 654, 913, 1050, 1078, 1156
BshNI GGYRCC 2 cut(s) 875, 970
BshTI ACCGGT 1 cut(s) 826
BsiEI CGRYCG 3 cut(s) 15, 553, 732
BsiHKAI GWGCWC 1 cut(s) 357
BsiHKCI CYCGRG 1 cut(s) 1080
BslFI GGGAC 2 cut(s) 466, 788
BsmAI GTCTC 2 cut(s) 551, 1047
BsmBI CGTCTC 1 cut(s) 551
BsmFI GGGAC 2 cut(s) 466, 788
BsnI GGCC 5 cut(s) 654, 913, 1050, 1078, 1156
BsoBI CYCGRG 1 cut(s) 1080
Bsp120I GGGCCC 1 cut(s) 1154
Bsp1286I GDGCHC 2 cut(s) 357, 1158
Bsp13I TCCGGA 2 cut(s) 177, 988
Bsp143I GATC 8 cut(s) 12, 191, 384, 478, 535, 707, 729, 786
Bsp1720I GCTNAGC 1 cut(s) 1206
Bsp68I TCGCGA 1 cut(s) 1090
BspACI CCGC 4 cut(s) 185, 698, 935, 1106
BspANI GGCC 5 cut(s) 654, 913, 1050, 1078, 1156
BspCNI CTCAG 3 cut(s) 862, 913, 1177
BspEI TCCGGA 2 cut(s) 177, 988
BspFNI CGCG 2 cut(s) 185, 1090
BspLI GGNNCC 8 cut(s) 214, 611, 804, 877, 972, 1155, 1156, 1157
BspMAI CTGCAG 2 cut(s) 10, 364
BspMI ACCTGC 1 cut(s) 1010
BspPI GGATC 4 cut(s) 392, 486, 530, 715
BspT107I GGYRCC 2 cut(s) 875, 970
BsrFI RCCGGY 3 cut(s) 826, 909, 973
BsrI ACTGG 3 cut(s) 71, 214, 1219
BssAI RCCGGY 3 cut(s) 826, 909, 973
BssMI GATC 8 cut(s) 12, 191, 384, 478, 535, 707, 729, 786
BssNI GRCGYC 1 cut(s) 971
BssT1I CCWWGG 3 cut(s) 230, 613, 665
Bst2UI CCWGG 2 cut(s) 807, 916
Bst4CI ACNGT 7 cut(s) 48, 217, 242, 300, 436, 554, 1126
Bst6I CTCTTC 1 cut(s) 781
BstACI GRCGYC 1 cut(s) 971
BstAPI GCANNNNNTGC 1 cut(s) 689
BstC8I GCNNGC 6 cut(s) 855, 911, 948, 1076, 1181, 1203
BstDEI CTNAG 6 cut(s) 590, 870, 921, 1053, 1185, 1206
BstDSI CCRYGG 3 cut(s) 216, 299, 1125
BstEII GGTNACC 2 cut(s) 236, 976
BstF5I GGATG 9 cut(s) 17, 277, 528, 579, 909, 931, 943, 985, 1135
BstFNI CGCG 2 cut(s) 185, 1090
BstH2I RGCGCY 3 cut(s) 491, 622, 974
BstHHI GCGC 6 cut(s) 185, 490, 621, 853, 909, 973
BstKTI GATC 8 cut(s) 15, 194, 387, 481, 538, 710, 732, 789
BstMAI GTCTC 2 cut(s) 551, 1047
BstMBI GATC 8 cut(s) 12, 191, 384, 478, 535, 707, 729, 786
BstMCI CGRYCG 3 cut(s) 15, 553, 732
BstNI CCWGG 2 cut(s) 807, 916
BstNSI RCATGY 1 cut(s) 1183
BstPI GGTNACC 2 cut(s) 236, 976
BstSCI CCNGG 4 cut(s) 412, 805, 914, 1223
BstSFI CTRYAG 2 cut(s) 6, 360
BstSLI GKGCMC 1 cut(s) 1158
BstUI CGCG 2 cut(s) 185, 1090
BstV1I GCAGC 4 cut(s) 20, 477, 608, 695
BstX2I RGATCY 2 cut(s) 191, 384
BstYI RGATCY 2 cut(s) 191, 384
Bsu36I CCTNAGG 1 cut(s) 1053
BsuRI GGCC 5 cut(s) 654, 913, 1050, 1078, 1156
BtgI CCRYGG 3 cut(s) 216, 299, 1125
BtgZI GCGATG 1 cut(s) 516
BtsCI GGATG 9 cut(s) 17, 277, 528, 579, 909, 931, 943, 985, 1135
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 1 cut(s) 369
BtuMI TCGCGA 1 cut(s) 1090
BveI ACCTGC 1 cut(s) 1010
Cac8I GCNNGC 6 cut(s) 855, 911, 948, 1076, 1181, 1203
CfoI GCGC 6 cut(s) 185, 490, 621, 853, 909, 973
Cfr10I RCCGGY 3 cut(s) 826, 909, 973
Cfr13I GGNCC 8 cut(s) 296, 725, 802, 829, 912, 1049, 1154, 1155
CseI GACGC 1 cut(s) 533
Csp6I GTAC 3 cut(s) 224, 867, 876
CspAI ACCGGT 1 cut(s) 826
CviAII CATG 7 cut(s) 22, 263, 319, 533, 647, 956, 1180
CviQI GTAC 3 cut(s) 224, 867, 876
DdeI CTNAG 6 cut(s) 590, 870, 921, 1053, 1185, 1206
DinI GGCGCC 1 cut(s) 972
DpnI GATC 8 cut(s) 14, 193, 386, 480, 537, 709, 731, 788
DpnII GATC 8 cut(s) 12, 191, 384, 478, 535, 707, 729, 786
DrdI GACNNNNNNGTC 1 cut(s) 46
DriI GACNNNNNGTC 1 cut(s) 1138
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 652
Eam1104I CTCTTC 1 cut(s) 781
Eam1105I GACNNNNNGTC 1 cut(s) 1138
EarI CTCTTC 1 cut(s) 781
EciI GGCGGA 1 cut(s) 713
Ecl136II GAGCTC 1 cut(s) 355
Eco130I CCWWGG 3 cut(s) 230, 613, 665
Eco147I AGGCCT 1 cut(s) 1078
Eco24I GRGCYC 2 cut(s) 357, 1158
Eco47I GGWCC 4 cut(s) 296, 725, 802, 829
Eco53kI GAGCTC 1 cut(s) 355
Eco81I CCTNAGG 1 cut(s) 1053
Eco88I CYCGRG 1 cut(s) 1080
Eco91I GGTNACC 2 cut(s) 236, 976
EcoICRI GAGCTC 1 cut(s) 355
EcoO109I RGGNCCY 4 cut(s) 802, 1049, 1154, 1155
EcoO65I GGTNACC 2 cut(s) 236, 976
EcoRII CCWGG 2 cut(s) 805, 914
EcoT14I CCWWGG 3 cut(s) 230, 613, 665
EcoT38I GRGCYC 2 cut(s) 357, 1158
EgeI GGCGCC 1 cut(s) 972
EheI GGCGCC 1 cut(s) 972
ErhI CCWWGG 3 cut(s) 230, 613, 665
Esp3I CGTCTC 1 cut(s) 551
FaeI CATG 7 cut(s) 25, 266, 322, 536, 650, 959, 1183
FalI AAGNNNNNCTT 4 cut(s) 501, 533, 944, 976
FaqI GGGAC 2 cut(s) 466, 788
FatI CATG 7 cut(s) 21, 262, 318, 532, 646, 955, 1179
FblI GTMKAC 1 cut(s) 1059
Fnu4HI GCNGC 6 cut(s) 6, 9, 491, 622, 684, 1107
FokI GGATG 9 cut(s) 4, 284, 515, 566, 916, 938, 950, 972, 1142
FriOI GRGCYC 2 cut(s) 357, 1158
Fsp4HI GCNGC 6 cut(s) 6, 9, 491, 622, 684, 1107
FspBI CTAG 2 cut(s) 279, 666
GlaI GCGC 6 cut(s) 184, 489, 620, 852, 908, 972
GluI GCNGC 6 cut(s) 6, 9, 491, 622, 684, 1107
GsaI CCCAGC 1 cut(s) 696
GsuI CTGGAG 1 cut(s) 491
HaeII RGCGCY 3 cut(s) 491, 622, 974
HaeIII GGCC 5 cut(s) 654, 913, 1050, 1078, 1156
HgaI GACGC 1 cut(s) 533
HhaI GCGC 6 cut(s) 185, 490, 621, 853, 909, 973
Hin1I GRCGYC 1 cut(s) 971
Hin1II CATG 7 cut(s) 25, 266, 322, 536, 650, 959, 1183
Hin6I GCGC 6 cut(s) 183, 488, 619, 851, 907, 971
HinP1I GCGC 6 cut(s) 183, 488, 619, 851, 907, 971
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 8 cut(s) 85, 170, 322, 594, 643, 835, 1133, 1148
HphI GGTGA 3 cut(s) 248, 250, 473
Hpy166II GTNNAC 5 cut(s) 207, 252, 673, 725, 1060
Hpy188I TCNGA 5 cut(s) 92, 120, 352, 577, 1015
Hpy188III TCNNGA 7 cut(s) 178, 328, 548, 832, 839, 989, 1089
Hpy8I GTNNAC 5 cut(s) 207, 252, 673, 725, 1060
HpyAV CCTTC 3 cut(s) 132, 283, 1063
HpyCH4III ACNGT 7 cut(s) 48, 217, 242, 300, 436, 554, 1126
HpyCH4IV ACGT 2 cut(s) 313, 759
HpyCH4V TGCA 5 cut(s) 8, 153, 362, 985, 1019
HpyF3I CTNAG 6 cut(s) 590, 870, 921, 1053, 1185, 1206
HpySE526I ACGT 2 cut(s) 313, 759
Hsp92I GRCGYC 1 cut(s) 971
Hsp92II CATG 7 cut(s) 25, 266, 322, 536, 650, 959, 1183
HspAI GCGC 6 cut(s) 183, 488, 619, 851, 907, 971
KasI GGCGCC 1 cut(s) 970
Kpn2I TCCGGA 2 cut(s) 177, 988
KpnI GGTACC 1 cut(s) 879
KroI GCCGGC 1 cut(s) 909
KroNI GCCGGC 1 cut(s) 911
Kzo9I GATC 8 cut(s) 12, 191, 384, 478, 535, 707, 729, 786
LmnI GCTCC 5 cut(s) 180, 352, 615, 700, 934
Lsp1109I GCAGC 4 cut(s) 20, 477, 608, 695
MaeI CTAG 2 cut(s) 279, 666
MaeII ACGT 2 cut(s) 313, 759
MaeIII GTNAC 3 cut(s) 236, 391, 976
MalI GATC 8 cut(s) 14, 193, 386, 480, 537, 709, 731, 788
MboI GATC 8 cut(s) 12, 191, 384, 478, 535, 707, 729, 786
MboII GAAGA 5 cut(s) 77, 768, 829, 832, 1078
MfeI CAATTG 1 cut(s) 456
MflI RGATCY 2 cut(s) 191, 384
MhlI GDGCHC 2 cut(s) 357, 1158
MlsI TGGCCA 1 cut(s) 654
MluCI AATT 2 cut(s) 121, 456
MluNI TGGCCA 1 cut(s) 654
Mly113I GGCGCC 1 cut(s) 971
MlyI GAGTC 2 cut(s) 1127, 1157
MmeI TCCRAC 2 cut(s) 334, 351
Mox20I TGGCCA 1 cut(s) 654
MroI TCCGGA 2 cut(s) 177, 988
MroNI GCCGGC 1 cut(s) 909
MscI TGGCCA 1 cut(s) 654
MslI CAYNNNNRTG 1 cut(s) 630
Msp20I TGGCCA 1 cut(s) 654
MspA1I CMGCKG 1 cut(s) 686
MspR9I CCNGG 4 cut(s) 414, 807, 916, 1225
MunI CAATTG 1 cut(s) 456
MvaI CCWGG 2 cut(s) 807, 916
MvnI CGCG 2 cut(s) 185, 1090
NaeI GCCGGC 1 cut(s) 911
NarI GGCGCC 1 cut(s) 971
NciI CCSGG 2 cut(s) 414, 1225
NdeII GATC 8 cut(s) 12, 191, 384, 478, 535, 707, 729, 786
NgoMIV GCCGGC 1 cut(s) 909
NlaIII CATG 7 cut(s) 25, 266, 322, 536, 650, 959, 1183
NlaIV GGNNCC 8 cut(s) 214, 611, 804, 877, 972, 1155, 1156, 1157
NmuCI GTSAC 1 cut(s) 236
NruI TCGCGA 1 cut(s) 1090
NspI RCATGY 1 cut(s) 1183
OliI CACNNNNGTG 1 cut(s) 630
PaeI GCATGC 1 cut(s) 1183
PasI CCCWGGG 1 cut(s) 915
PceI AGGCCT 1 cut(s) 1078
PcsI WCGNNNNNNNCGW 1 cut(s) 1087
PdiI GCCGGC 1 cut(s) 911
PfeI GAWTC 6 cut(s) 85, 170, 322, 594, 643, 835
PinAI ACCGGT 1 cut(s) 826
PkrI GCNGC 6 cut(s) 7, 10, 492, 623, 685, 1108
Ple19I CGATCG 2 cut(s) 15, 732
PleI GAGTC 2 cut(s) 1127, 1156
PluTI GGCGCC 1 cut(s) 974
PpsI GAGTC 2 cut(s) 1127, 1156
PpuMI RGGWCCY 1 cut(s) 802
Psp124BI GAGCTC 1 cut(s) 357
Psp1406I AACGTT 1 cut(s) 759
Psp5II RGGWCCY 1 cut(s) 802
Psp6I CCWGG 2 cut(s) 805, 914
PspEI GGTNACC 2 cut(s) 236, 976
PspFI CCCAGC 1 cut(s) 692
PspGI CCWGG 2 cut(s) 805, 914
PspN4I GGNNCC 8 cut(s) 214, 611, 804, 877, 972, 1155, 1156, 1157
PspOMI GGGCCC 1 cut(s) 1154
PspPI GGNCC 8 cut(s) 296, 725, 802, 829, 912, 1049, 1154, 1155
PspPPI RGGWCCY 1 cut(s) 802
PstI CTGCAG 2 cut(s) 10, 364
PsuI RGATCY 2 cut(s) 191, 384
PvuI CGATCG 2 cut(s) 15, 732
PvuII CAGCTG 1 cut(s) 686
RgaI GCGATCGC 1 cut(s) 15
RruI TCGCGA 1 cut(s) 1090
RsaI GTAC 3 cut(s) 225, 868, 877
RsaNI GTAC 3 cut(s) 224, 867, 876
RseI CAYNNNNRTG 1 cut(s) 630
SacI GAGCTC 1 cut(s) 357
SatI GCNGC 6 cut(s) 6, 9, 491, 622, 684, 1107
Sau3AI GATC 8 cut(s) 12, 191, 384, 478, 535, 707, 729, 786
Sau96I GGNCC 8 cut(s) 296, 725, 802, 829, 912, 1049, 1154, 1155
SchI GAGTC 2 cut(s) 1127, 1157
ScrFI CCNGG 4 cut(s) 414, 807, 916, 1225
SduI GDGCHC 2 cut(s) 357, 1158
SfaAI GCGATCGC 1 cut(s) 15
SfcI CTRYAG 2 cut(s) 6, 360
SfoI GGCGCC 1 cut(s) 972
SgfI GCGATCGC 1 cut(s) 15
SinI GGWCC 4 cut(s) 296, 725, 802, 829
SmiMI CAYNNNNRTG 1 cut(s) 630
SmlI CTYRAG 4 cut(s) 53, 507, 891, 1044
SmoI CTYRAG 4 cut(s) 53, 507, 891, 1044
SphI GCATGC 1 cut(s) 1183
Sse9I AATT 2 cut(s) 121, 456
SseBI AGGCCT 1 cut(s) 1078
SsiI CCGC 4 cut(s) 185, 698, 935, 1106
SspDI GGCGCC 1 cut(s) 970
SspMI CTAG 2 cut(s) 279, 666
SstI GAGCTC 1 cut(s) 357
StuI AGGCCT 1 cut(s) 1078
StyD4I CCNGG 4 cut(s) 412, 805, 914, 1223
StyI CCWWGG 3 cut(s) 230, 613, 665
TaaI ACNGT 7 cut(s) 48, 217, 242, 300, 436, 554, 1126
TaiI ACGT 2 cut(s) 316, 762
TaqI TCGA 3 cut(s) 549, 815, 1005
TaqII GACCGA 1 cut(s) 742
TasI AATT 2 cut(s) 121, 456
TauI GCSGC 1 cut(s) 1109
TfiI GAWTC 6 cut(s) 85, 170, 322, 594, 643, 835
TscAI CASTG 1 cut(s) 369
TseFI GTSAC 1 cut(s) 236
TseI GCWGC 5 cut(s) 5, 8, 490, 621, 683
Tsp45I GTSAC 1 cut(s) 236
TspDTI ATGAA 2 cut(s) 162, 618
TspRI CASTG 1 cut(s) 369
VpaK11BI GGWCC 4 cut(s) 296, 725, 802, 829
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 1183
XcmI CCANNNNNNNNNTGG 1 cut(s) 958
XmaJI CCTAGG 1 cut(s) 665
XmiI GTMKAC 1 cut(s) 1059
XspI CTAG 2 cut(s) 279, 666
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.