Rmu_sc0006452.1_g000001

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006452.1
Physical Location & Seq
Reverse (-)
476 .. 1411
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006452.1_g000001.1.cds

Sequence Viewer

Length: 780 bp
atggctgctgctattgcctccatgactgccaggctagcgaccaagttgtcacttagagagggtgaagaactggtggacttggggaaccttagggttctggggaaggaatttcttgctcgccatttttacttggtggggaaactcaacacttgtagggcggtagtcttggatttgttccggagtgtggttagatccatgtggagactaacggggacgatggaggtccaacccctgggtgacaaatttttgtttacgttcaccaatgaacgtgatgttgcgcgggtgaagaagggaggcatgtggggctttcaacgggctatgattctgctgaatgactatgatggcttctcggagattgctgaggtgaagcatgattttgtttggatctgggttgtgcttcaaggcatcccatcgggtatcttgactgaacctacggtcaggttggtgggagggacgattagcgaggttctggaggtggatcgcttggctcttcgtcgtggggaagctcgggtggaggatgagtcagaatccgttactgtggtggaggaaggctcgcagcaggctccggggtcggttcacccagccctcgtgtttagggccaactcccagccctttccttccttgctttctatcttcaaagttcctaacttgctgaagaagaaacaagtgcaaatccgtcttcttccggagccggtgaccttgcctgggtctgaaggcacgtctgcttctattccaatcgtgggggtggggcgccctgataccctcaaagcaagcatataa

Protein Analysis

259

Amino Acids

28.55

Weight (kDa)

8.71

Isoelectric Point (pI)

34.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 750
AccB7I CCANNNNNTGG 1 cut(s) 232
AccII CGCG 1 cut(s) 280
AccIII TCCGGA 2 cut(s) 177, 685
AciI CCGC 2 cut(s) 158, 280
AclWI GGATC 3 cut(s) 186, 392, 486
AcsI RAATTY 2 cut(s) 107, 242
AcuI CTGAAG 2 cut(s) 674, 732
AcyI GRCGYC 1 cut(s) 751
AfiI CCNNNNNNNGG 4 cut(s) 184, 232, 705, 740
AgsI TTSAA 3 cut(s) 311, 401, 637
AjiI CACGTC 1 cut(s) 720
AjnI CCWGG 3 cut(s) 29, 231, 703
AluBI AGCT 1 cut(s) 506
AluI AGCT 1 cut(s) 506
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 3 cut(s) 186, 392, 486
Ama87I CYCGRG 1 cut(s) 507
Aor13HI TCCGGA 2 cut(s) 177, 685
AoxI GGCC 1 cut(s) 597
ApeKI GCWGC 3 cut(s) 5, 8, 556
ApoI RAATTY 2 cut(s) 107, 242
AspLEI GCGC 2 cut(s) 280, 753
AspS9I GGNCC 2 cut(s) 223, 597
AsuC2I CCSGG 1 cut(s) 567
AsuHPI GGTGA 7 cut(s) 74, 248, 250, 295, 376, 569, 706
AsuNHI GCTAGC 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 507
AvaII GGWCC 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 89
BanI GGYRCC 1 cut(s) 750
BauI CACGAG 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 671
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 568
BccI CCATC 3 cut(s) 211, 335, 418
BciT130I CCWGG 3 cut(s) 31, 233, 705
BcnI CCSGG 1 cut(s) 567
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 35
BfoI RGCGCY 1 cut(s) 754
BisI GCNGC 3 cut(s) 6, 9, 557
BlsI GCNGC 3 cut(s) 7, 10, 558
Bme1390I CCNGG 4 cut(s) 31, 233, 567, 705
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 507
BmgBI CACGTC 1 cut(s) 720
BmgT120I GGNCC 2 cut(s) 223, 597
BmiI GGNNCC 4 cut(s) 86, 564, 690, 752
BmrFI CCNGG 4 cut(s) 31, 233, 567, 705
BmsI GCATC 1 cut(s) 414
BmtI GCTAGC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 671
BplI GAGNNNNNCTC 2 cut(s) 536, 568
BpmI CTGGAG 1 cut(s) 491
Bpu10I CCTNAGC 1 cut(s) 360
BpuMI CCSGG 1 cut(s) 567
BsaHI GRCGYC 1 cut(s) 751
BsaJI CCNNGG 4 cut(s) 231, 232, 566, 704
BsaWI WCCGGW 2 cut(s) 177, 685
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 4 cut(s) 184, 232, 705, 740
Bse118I RCCGGY 1 cut(s) 691
Bse1I ACTGG 1 cut(s) 75
Bse21I CCTNAGG 1 cut(s) 89
BseAI TCCGGA 2 cut(s) 177, 685
BseBI CCWGG 3 cut(s) 31, 233, 705
BseDI CCNNGG 4 cut(s) 231, 232, 566, 704
BseGI GGATG 2 cut(s) 405, 523
BseLI CCNNNNNNNGG 4 cut(s) 184, 232, 705, 740
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 75
BseXI GCAGC 1 cut(s) 568
BseYI CCCAGC 2 cut(s) 580, 606
Bsh1236I CGCG 1 cut(s) 280
BshFI GGCC 1 cut(s) 599
BshNI GGYRCC 1 cut(s) 750
BsiHKCI CYCGRG 1 cut(s) 507
BsiSI CCGG 4 cut(s) 178, 566, 686, 692
BslFI GGGAC 2 cut(s) 226, 466
BslI CCNNNNNNNGG 4 cut(s) 184, 232, 705, 740
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 226, 466
BsnI GGCC 1 cut(s) 599
BsoBI CYCGRG 1 cut(s) 507
Bsp13I TCCGGA 2 cut(s) 177, 685
Bsp143I GATC 3 cut(s) 191, 384, 478
BspACI CCGC 2 cut(s) 158, 280
BspANI GGCC 1 cut(s) 599
BspCNI CTCAG 1 cut(s) 352
BspEI TCCGGA 2 cut(s) 177, 685
BspFNI CGCG 1 cut(s) 280
BspLI GGNNCC 4 cut(s) 86, 564, 690, 752
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 3 cut(s) 186, 392, 486
BspQI GCTCTTC 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 750
BsrFI RCCGGY 1 cut(s) 691
BsrI ACTGG 1 cut(s) 75
BssAI RCCGGY 1 cut(s) 691
BssECI CCNNGG 4 cut(s) 231, 232, 566, 704
BssMI GATC 3 cut(s) 191, 384, 478
BssNI GRCGYC 1 cut(s) 751
BssSI CACGAG 1 cut(s) 587
Bst2BI CACGAG 1 cut(s) 587
Bst2UI CCWGG 3 cut(s) 31, 233, 705
Bst4CI ACNGT 2 cut(s) 436, 538
Bst6I CTCTTC 1 cut(s) 495
BstACI GRCGYC 1 cut(s) 751
BstC8I GCNNGC 5 cut(s) 36, 118, 554, 561, 772
BstDEI CTNAG 3 cut(s) 53, 89, 360
BstEII GGTNACC 1 cut(s) 694
BstF5I GGATG 2 cut(s) 405, 523
BstFNI CGCG 1 cut(s) 280
BstH2I RGCGCY 1 cut(s) 754
BstHHI GCGC 2 cut(s) 280, 753
BstKTI GATC 3 cut(s) 194, 387, 481
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 3 cut(s) 191, 384, 478
BstMWI GCNNNNNNNGC 3 cut(s) 14, 35, 303
BstNI CCWGG 3 cut(s) 31, 233, 705
BstNSI RCATGY 1 cut(s) 301
BstPI GGTNACC 1 cut(s) 694
BstSCI CCNGG 4 cut(s) 29, 231, 565, 703
BstUI CGCG 1 cut(s) 280
BstV1I GCAGC 1 cut(s) 568
BstV2I GAAGAC 1 cut(s) 671
BstX2I RGATCY 2 cut(s) 191, 384
BstYI RGATCY 2 cut(s) 191, 384
Bsu36I CCTNAGG 1 cut(s) 89
BsuRI GGCC 1 cut(s) 599
BtrI CACGTC 1 cut(s) 720
BtsCI GGATG 2 cut(s) 405, 523
Cac8I GCNNGC 5 cut(s) 36, 118, 554, 561, 772
CfoI GCGC 2 cut(s) 280, 753
Cfr10I RCCGGY 1 cut(s) 691
Cfr13I GGNCC 2 cut(s) 223, 597
CviAII CATG 4 cut(s) 22, 196, 298, 371
DdeI CTNAG 3 cut(s) 53, 89, 360
DinI GGCGCC 1 cut(s) 752
DpnI GATC 3 cut(s) 193, 386, 480
DpnII GATC 3 cut(s) 191, 384, 478
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 2 cut(s) 674, 732
Eco81I CCTNAGG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 507
Eco91I GGTNACC 1 cut(s) 694
EcoO65I GGTNACC 1 cut(s) 694
EcoRII CCWGG 3 cut(s) 29, 231, 703
EgeI GGCGCC 1 cut(s) 752
EheI GGCGCC 1 cut(s) 752
FaeI CATG 4 cut(s) 25, 199, 301, 374
FaiI YATR 8 cut(s) 23, 197, 299, 320, 339, 372, 776, 778
FaqI GGGAC 2 cut(s) 226, 466
FatI CATG 4 cut(s) 21, 195, 297, 370
FauI CCCGC 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 6, 9, 557
FokI GGATG 2 cut(s) 392, 530
Fsp4HI GCNGC 3 cut(s) 6, 9, 557
FspBI CTAG 1 cut(s) 35
GlaI GCGC 2 cut(s) 279, 752
GluI GCNGC 3 cut(s) 6, 9, 557
GsaI CCCAGC 2 cut(s) 584, 610
GsuI CTGGAG 1 cut(s) 491
HaeII RGCGCY 1 cut(s) 754
HaeIII GGCC 1 cut(s) 599
HapII CCGG 4 cut(s) 178, 566, 686, 692
HhaI GCGC 2 cut(s) 280, 753
Hin1I GRCGYC 1 cut(s) 751
Hin1II CATG 4 cut(s) 25, 199, 301, 374
Hin6I GCGC 2 cut(s) 278, 751
HinP1I GCGC 2 cut(s) 278, 751
HinfI GANTC 3 cut(s) 322, 521, 527
HpaII CCGG 4 cut(s) 178, 566, 686, 692
HphI GGTGA 7 cut(s) 74, 248, 250, 295, 376, 569, 706
Hpy166II GTNNAC 4 cut(s) 76, 252, 258, 577
Hpy188I TCNGA 3 cut(s) 352, 526, 712
Hpy188III TCNNGA 4 cut(s) 178, 421, 470, 686
Hpy8I GTNNAC 4 cut(s) 76, 252, 258, 577
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 5 cut(s) 97, 283, 542, 627, 707
HpyCH4III ACNGT 2 cut(s) 436, 538
HpyCH4IV ACGT 3 cut(s) 254, 268, 719
HpyCH4V TGCA 1 cut(s) 670
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 35, 303
HpyF3I CTNAG 3 cut(s) 53, 89, 360
HpySE526I ACGT 3 cut(s) 254, 268, 719
Hsp92I GRCGYC 1 cut(s) 751
Hsp92II CATG 4 cut(s) 25, 199, 301, 374
HspAI GCGC 2 cut(s) 278, 751
KasI GGCGCC 1 cut(s) 750
Kpn2I TCCGGA 2 cut(s) 177, 685
Kzo9I GATC 3 cut(s) 191, 384, 478
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 2 cut(s) 568, 688
Lsp1109I GCAGC 1 cut(s) 568
LweI GCATC 1 cut(s) 414
MaeI CTAG 1 cut(s) 35
MaeII ACGT 3 cut(s) 254, 268, 719
MaeIII GTNAC 4 cut(s) 48, 236, 532, 694
MalI GATC 3 cut(s) 193, 386, 480
MboI GATC 3 cut(s) 191, 384, 478
MboII GAAGA 8 cut(s) 77, 298, 482, 625, 667, 670, 671, 674
MflI RGATCY 2 cut(s) 191, 384
MluCI AATT 2 cut(s) 107, 242
Mly113I GGCGCC 1 cut(s) 751
MlyI GAGTC 1 cut(s) 530
MmeI TCCRAC 1 cut(s) 250
MroI TCCGGA 2 cut(s) 177, 685
MspI CCGG 4 cut(s) 178, 566, 686, 692
MspR9I CCNGG 4 cut(s) 31, 233, 567, 705
MvaI CCWGG 3 cut(s) 31, 233, 705
MvnI CGCG 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 14, 35, 303
NarI GGCGCC 1 cut(s) 751
NciI CCSGG 1 cut(s) 567
NdeII GATC 3 cut(s) 191, 384, 478
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 4 cut(s) 25, 199, 301, 374
NlaIV GGNNCC 4 cut(s) 86, 564, 690, 752
NmuCI GTSAC 3 cut(s) 48, 236, 694
NspI RCATGY 1 cut(s) 301
PasI CCCWGGG 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 495
PfeI GAWTC 2 cut(s) 322, 527
PflMI CCANNNNNTGG 1 cut(s) 232
PkrI GCNGC 3 cut(s) 7, 10, 558
PleI GAGTC 1 cut(s) 529
PluTI GGCGCC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 529
Psp6I CCWGG 3 cut(s) 29, 231, 703
PspEI GGTNACC 1 cut(s) 694
PspFI CCCAGC 2 cut(s) 580, 606
PspGI CCWGG 3 cut(s) 29, 231, 703
PspN4I GGNNCC 4 cut(s) 86, 564, 690, 752
PspPI GGNCC 2 cut(s) 223, 597
PsuI RGATCY 2 cut(s) 191, 384
SapI GCTCTTC 1 cut(s) 495
SatI GCNGC 3 cut(s) 6, 9, 557
Sau3AI GATC 3 cut(s) 191, 384, 478
Sau96I GGNCC 2 cut(s) 223, 597
SchI GAGTC 1 cut(s) 530
ScrFI CCNGG 4 cut(s) 31, 233, 567, 705
SfaNI GCATC 1 cut(s) 414
SfoI GGCGCC 1 cut(s) 752
SinI GGWCC 1 cut(s) 223
Sse9I AATT 2 cut(s) 107, 242
SsiI CCGC 2 cut(s) 158, 280
SspDI GGCGCC 1 cut(s) 750
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 4 cut(s) 29, 231, 565, 703
TaaI ACNGT 2 cut(s) 436, 538
TaiI ACGT 3 cut(s) 257, 271, 722
TasI AATT 2 cut(s) 107, 242
TfiI GAWTC 2 cut(s) 322, 527
TseFI GTSAC 3 cut(s) 48, 236, 694
TseI GCWGC 3 cut(s) 5, 8, 556
Tsp45I GTSAC 3 cut(s) 48, 236, 694
TspDTI ATGAA 1 cut(s) 279
TspGWI ACGGA 2 cut(s) 520, 665
Van91I CCANNNNNTGG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 2 cut(s) 107, 242
XceI RCATGY 1 cut(s) 301
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.