RchiOBHm_Chr5g0018871

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000172
Physical Location & Seq
Reverse (-)
13360562 .. 13363070
2509 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29903

Sequence Viewer

Length: 1125 bp
ATGACTGCCAGACTTGCGACTAAACTGTCGCTCAAGGAGGGAGAAGAACCAGTTGATTTGGGGAATCTCCGAGTTCCGGGGAAAGAGTTTTTGGCTCGGAATTTCTATTTGGTAGGAAGGCTCAATACTTGCAGGGGGCTGATGCTGGATTCATTCCGGAGCGCTGTAAGATCTATGTGGAGGTTGACTGGAGTCGTGGAGGTACAACCAAGGGGTGACCGTTTTCTGTTTACATTCACCCATGACAGGGATGTTGCTAGAGTAAAGAAGGGAGGACCGTGGGGCTTCCAACAACCTACCGTCCGGTTGGTTGGTGGGACAATTGGCGAGGTGCTAGAGGTGGATCGTCCGGCGCTGCGTAGGGGCGATGCTCGAGTTAGGCTTGTTCTATCTATCCATGATCCGGTGCATCTCGATCGTAGGGTTAGGGTTTCTCCCTCTGACGTCCTAACCCTAAGATTCAGGTATGAAAGGCTCCTTGGGCGCTGCCACTCCTGTGCTATGCTGAATCATGGTGGCCAACGATGCCTTAGGGTGGACGAGTTGGCAGCTGATGCTGGGGCGGAGCAGGGATCACAAACGGCTGGTGGACCGATCATTCCAGCCCTTGTCTTTAGGGCAAACGTTCAGCCCTCTATCTCTTCTCCATTGATCTCTACTTTCAAGGTCCCTGGCTTGTCGAAGAAGAAACCGGTACAGATTCGTGAGCTTCCTGCGCTTGCGTTGTCTGGTACTGAGGGTACCTCCACCCAAACTCAAGTGGTGGGGATGCGCCGGCCCAGGGCTGAGGATGCTCCTGCGGACGGTAAGCGAGCCAAGCATGGCTTGGCTTTGGCGCCGGTAACCCTGCAACCGGAAAATCTTGGGTTCGAGTTTTCTGATGCAGGTTTGGTAGGTGGGAAGCTGTCTCAAGGCCCTAAGGTCTACAAGAAGAAGGGTAGGCCTCGGGGTTCGCGAAACAAAGTCAAAGCGGCATTGGTGTCAGCCACCGTGGATGACTCTGGGTCTATGGGAGCTCGCTCAAATGTGAGCGTTCCAGAGATTTTAATTATCTGCTCTAGCTTAGATAGTTTAGTTCGGTTTTTCTTGCCGAGTTTTGTTTATGTAAGTTATGGTAAACTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

374

Amino Acids

40.74

Weight (kDa)

10.34

Isoelectric Point (pI)

38.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 132 - 177 8.9e-09 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AatII GACGTC 1 cut(s) 447
Acc36I ACCTGC 1 cut(s) 875
Acc65I GGTACC 1 cut(s) 740
AccB1I GGYRCC 2 cut(s) 740, 835
AccI GTMKAC 1 cut(s) 924
AccII CGCG 1 cut(s) 955
AccIII TCCGGA 1 cut(s) 156
AciI CCGC 3 cut(s) 563, 800, 971
AclI AACGTT 1 cut(s) 624
AclWI GGATC 3 cut(s) 351, 395, 580
AcoI YGGCCR 1 cut(s) 517
AcsI RAATTY 1 cut(s) 100
AcyI GRCGYC 2 cut(s) 444, 836
AfaI GTAC 4 cut(s) 204, 696, 733, 742
AfeI AGCGCT 1 cut(s) 163
AfiI CCNNNNNNNGG 8 cut(s) 76, 246, 247, 403, 535, 781, 803, 853
AgeI ACCGGT 1 cut(s) 691
AgsI TTSAA 1 cut(s) 664
AhdI GACNNNNNGTC 1 cut(s) 1003
AjnI CCWGG 2 cut(s) 670, 779
AjuI GAANNNNNNNTTGG 6 cut(s) 74, 92, 106, 124, 462, 494
AleI CACNNNNGTG 1 cut(s) 495
AluBI AGCT 5 cut(s) 551, 709, 904, 1016, 1062
AluI AGCT 5 cut(s) 551, 709, 904, 1016, 1062
Alw21I GWGCWC 1 cut(s) 1018
Alw26I GTCTC 1 cut(s) 912
AlwI GGATC 3 cut(s) 351, 395, 580
Ama87I CYCGRG 2 cut(s) 372, 945
Aor13HI TCCGGA 1 cut(s) 156
Aor51HI AGCGCT 1 cut(s) 163
AoxI GGCC 4 cut(s) 517, 776, 913, 941
ApeKI GCWGC 3 cut(s) 355, 486, 548
ApoI RAATTY 1 cut(s) 100
AsiGI ACCGGT 1 cut(s) 691
Asp718I GGTACC 1 cut(s) 740
AspLEI GCGC 6 cut(s) 164, 355, 486, 718, 774, 838
AspS9I GGNCC 5 cut(s) 275, 590, 667, 777, 914
AsuC2I CCSGG 1 cut(s) 78
AsuHPI GGTGA 2 cut(s) 227, 229
AvaI CYCGRG 2 cut(s) 372, 945
AvaII GGWCC 3 cut(s) 275, 590, 667
AxyI CCTNAGG 2 cut(s) 530, 918
BalI TGGCCA 1 cut(s) 519
BanI GGYRCC 2 cut(s) 740, 835
BanII GRGCYC 1 cut(s) 1018
BarI GAAGNNNNNNTAC 2 cut(s) 109, 141
Bbv12I GWGCWC 1 cut(s) 1018
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 3 cut(s) 342, 473, 560
BceAI ACGGC 1 cut(s) 597
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 2 cut(s) 672, 781
BcnI CCSGG 1 cut(s) 78
BcoDI GTCTC 1 cut(s) 912
BfaI CTAG 4 cut(s) 258, 335, 1059, 1123
BfoI RGCGCY 4 cut(s) 165, 356, 487, 839
BfuAI ACCTGC 1 cut(s) 875
BglII AGATCT 1 cut(s) 170
BisI GCNGC 4 cut(s) 356, 487, 549, 972
BlsI GCNGC 4 cut(s) 357, 488, 550, 973
Bme1390I CCNGG 3 cut(s) 78, 672, 781
Bme18I GGWCC 3 cut(s) 275, 590, 667
BmeRI GACNNNNNGTC 1 cut(s) 1003
BmeT110I CYCGRG 2 cut(s) 372, 945
BmgT120I GGNCC 5 cut(s) 275, 590, 667, 777, 914
BmiI GGNNCC 4 cut(s) 476, 669, 742, 837
BmrFI CCNGG 3 cut(s) 78, 672, 781
BmsI GCATC 8 cut(s) 132, 358, 418, 515, 544, 759, 781, 871
BoxI GACNNNNGTC 1 cut(s) 191
BplI GAGNNNNNCTC 2 cut(s) 728, 760
BpmI CTGGAG 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 786
BpuEI CTTGAG 3 cut(s) 17, 741, 894
BpuMI CCSGG 1 cut(s) 78
BsaHI GRCGYC 2 cut(s) 444, 836
BsaJI CCNNGG 9 cut(s) 77, 209, 278, 478, 670, 779, 780, 944, 990
BsaWI WCCGGW 5 cut(s) 156, 303, 403, 691, 853
Bsc4I CCNNNNNNNGG 8 cut(s) 76, 246, 247, 403, 535, 781, 803, 853
Bse118I RCCGGY 3 cut(s) 691, 774, 838
Bse1I ACTGG 2 cut(s) 50, 193
Bse21I CCTNAGG 2 cut(s) 530, 918
BseAI TCCGGA 1 cut(s) 156
BseBI CCWGG 2 cut(s) 672, 781
BseDI CCNNGG 9 cut(s) 77, 209, 278, 478, 670, 779, 780, 944, 990
BseGI GGATG 4 cut(s) 256, 774, 796, 1000
BseLI CCNNNNNNNGG 8 cut(s) 76, 246, 247, 403, 535, 781, 803, 853
BseMII CTCAG 2 cut(s) 726, 777
BseNI ACTGG 2 cut(s) 50, 193
BseXI GCAGC 3 cut(s) 342, 473, 560
BseYI CCCAGC 1 cut(s) 557
Bsh1236I CGCG 1 cut(s) 955
Bsh1285I CGRYCG 1 cut(s) 418
BshFI GGCC 4 cut(s) 519, 778, 915, 943
BshNI GGYRCC 2 cut(s) 740, 835
BshTI ACCGGT 1 cut(s) 691
BsiEI CGRYCG 1 cut(s) 418
BsiHKAI GWGCWC 1 cut(s) 1018
BsiHKCI CYCGRG 2 cut(s) 372, 945
BsiSI CCGG 9 cut(s) 77, 157, 304, 350, 404, 692, 775, 839, 854
BslFI GGGAC 2 cut(s) 331, 653
BslI CCNNNNNNNGG 8 cut(s) 76, 246, 247, 403, 535, 781, 803, 853
BsmAI GTCTC 1 cut(s) 912
BsmFI GGGAC 2 cut(s) 331, 653
BsnI GGCC 4 cut(s) 519, 778, 915, 943
BsoBI CYCGRG 2 cut(s) 372, 945
Bsp1286I GDGCHC 1 cut(s) 1018
Bsp13I TCCGGA 1 cut(s) 156
Bsp143I GATC 7 cut(s) 170, 343, 400, 415, 572, 594, 651
Bsp68I TCGCGA 1 cut(s) 955
BspACI CCGC 3 cut(s) 563, 800, 971
BspANI GGCC 4 cut(s) 519, 778, 915, 943
BspCNI CTCAG 2 cut(s) 727, 778
BspEI TCCGGA 1 cut(s) 156
BspFNI CGCG 1 cut(s) 955
BspLI GGNNCC 4 cut(s) 476, 669, 742, 837
BspMI ACCTGC 1 cut(s) 875
BspPI GGATC 3 cut(s) 351, 395, 580
BspT107I GGYRCC 2 cut(s) 740, 835
BsrFI RCCGGY 3 cut(s) 691, 774, 838
BsrI ACTGG 2 cut(s) 50, 193
BssAI RCCGGY 3 cut(s) 691, 774, 838
BssECI CCNNGG 9 cut(s) 77, 209, 278, 478, 670, 779, 780, 944, 990
BssMI GATC 7 cut(s) 170, 343, 400, 415, 572, 594, 651
BssNI GRCGYC 2 cut(s) 444, 836
BssT1I CCWWGG 2 cut(s) 209, 478
Bst2UI CCWGG 2 cut(s) 672, 781
Bst4CI ACNGT 6 cut(s) 27, 221, 279, 301, 806, 991
Bst6I CTCTTC 1 cut(s) 646
BstACI GRCGYC 2 cut(s) 444, 836
BstAPI GCANNNNNTGC 1 cut(s) 554
BstC8I GCNNGC 4 cut(s) 720, 776, 813, 1018
BstDEI CTNAG 6 cut(s) 455, 530, 735, 786, 918, 1063
BstDSI CCRYGG 2 cut(s) 278, 990
BstEII GGTNACC 2 cut(s) 215, 841
BstF5I GGATG 4 cut(s) 256, 774, 796, 1000
BstFNI CGCG 1 cut(s) 955
BstH2I RGCGCY 4 cut(s) 165, 356, 487, 839
BstHHI GCGC 6 cut(s) 164, 355, 486, 718, 774, 838
BstKTI GATC 7 cut(s) 173, 346, 403, 418, 575, 597, 654
BstMAI GTCTC 1 cut(s) 912
BstMBI GATC 7 cut(s) 170, 343, 400, 415, 572, 594, 651
BstMCI CGRYCG 1 cut(s) 418
BstMWI GCNNNNNNNGC 7 cut(s) 14, 481, 525, 554, 715, 791, 817
BstNI CCWGG 2 cut(s) 672, 781
BstPAI GACNNNNGTC 1 cut(s) 191
BstPI GGTNACC 2 cut(s) 215, 841
BstSCI CCNGG 3 cut(s) 76, 670, 779
BstUI CGCG 1 cut(s) 955
BstV1I GCAGC 3 cut(s) 342, 473, 560
BstX2I RGATCY 1 cut(s) 170
BstYI RGATCY 1 cut(s) 170
Bsu36I CCTNAGG 2 cut(s) 530, 918
BsuRI GGCC 4 cut(s) 519, 778, 915, 943
BtgI CCRYGG 2 cut(s) 278, 990
BtgZI GCGATG 1 cut(s) 381
BtsCI GGATG 4 cut(s) 256, 774, 796, 1000
BtuMI TCGCGA 1 cut(s) 955
BveI ACCTGC 1 cut(s) 875
Cac8I GCNNGC 4 cut(s) 720, 776, 813, 1018
CfoI GCGC 6 cut(s) 164, 355, 486, 718, 774, 838
Cfr10I RCCGGY 3 cut(s) 691, 774, 838
Cfr13I GGNCC 5 cut(s) 275, 590, 667, 777, 914
Csp6I GTAC 4 cut(s) 203, 695, 732, 741
CspAI ACCGGT 1 cut(s) 691
CviAII CATG 4 cut(s) 242, 398, 512, 821
CviQI GTAC 4 cut(s) 203, 695, 732, 741
DdeI CTNAG 6 cut(s) 455, 530, 735, 786, 918, 1063
DinI GGCGCC 1 cut(s) 837
DpnI GATC 7 cut(s) 172, 345, 402, 417, 574, 596, 653
DpnII GATC 7 cut(s) 170, 343, 400, 415, 572, 594, 651
DrdI GACNNNNNNGTC 1 cut(s) 25
DriI GACNNNNNGTC 1 cut(s) 1003
DseDI GACNNNNNNGTC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 517
Eam1104I CTCTTC 1 cut(s) 646
Eam1105I GACNNNNNGTC 1 cut(s) 1003
EarI CTCTTC 1 cut(s) 646
EciI GGCGGA 1 cut(s) 578
Ecl136II GAGCTC 1 cut(s) 1016
Eco130I CCWWGG 2 cut(s) 209, 478
Eco147I AGGCCT 1 cut(s) 943
Eco24I GRGCYC 1 cut(s) 1018
Eco47I GGWCC 3 cut(s) 275, 590, 667
Eco47III AGCGCT 1 cut(s) 163
Eco53kI GAGCTC 1 cut(s) 1016
Eco81I CCTNAGG 2 cut(s) 530, 918
Eco88I CYCGRG 2 cut(s) 372, 945
Eco91I GGTNACC 2 cut(s) 215, 841
EcoICRI GAGCTC 1 cut(s) 1016
EcoO109I RGGNCCY 2 cut(s) 667, 914
EcoO65I GGTNACC 2 cut(s) 215, 841
EcoRII CCWGG 2 cut(s) 670, 779
EcoT14I CCWWGG 2 cut(s) 209, 478
EcoT38I GRGCYC 1 cut(s) 1018
EgeI GGCGCC 1 cut(s) 837
EheI GGCGCC 1 cut(s) 837
ErhI CCWWGG 2 cut(s) 209, 478
FaeI CATG 4 cut(s) 245, 401, 515, 824
FalI AAGNNNNNCTT 2 cut(s) 809, 841
FaqI GGGAC 2 cut(s) 331, 653
FatI CATG 4 cut(s) 241, 397, 511, 820
FblI GTMKAC 1 cut(s) 924
Fnu4HI GCNGC 4 cut(s) 356, 487, 549, 972
FokI GGATG 4 cut(s) 263, 781, 803, 1007
FriOI GRGCYC 1 cut(s) 1018
Fsp4HI GCNGC 4 cut(s) 356, 487, 549, 972
FspBI CTAG 4 cut(s) 258, 335, 1059, 1123
GlaI GCGC 6 cut(s) 163, 354, 485, 717, 773, 837
GluI GCNGC 4 cut(s) 356, 487, 549, 972
GsaI CCCAGC 1 cut(s) 561
GsuI CTGGAG 1 cut(s) 210
HaeII RGCGCY 4 cut(s) 165, 356, 487, 839
HaeIII GGCC 4 cut(s) 519, 778, 915, 943
HapII CCGG 9 cut(s) 77, 157, 304, 350, 404, 692, 775, 839, 854
HhaI GCGC 6 cut(s) 164, 355, 486, 718, 774, 838
Hin1I GRCGYC 2 cut(s) 444, 836
Hin1II CATG 4 cut(s) 245, 401, 515, 824
Hin6I GCGC 6 cut(s) 162, 353, 484, 716, 772, 836
HinP1I GCGC 6 cut(s) 162, 353, 484, 716, 772, 836
HincII GTYRAC 1 cut(s) 186
HindII GTYRAC 1 cut(s) 186
HinfI GANTC 7 cut(s) 64, 149, 192, 459, 508, 700, 998
HpaII CCGG 9 cut(s) 77, 157, 304, 350, 404, 692, 775, 839, 854
HphI GGTGA 2 cut(s) 227, 229
Hpy166II GTNNAC 6 cut(s) 186, 231, 538, 590, 925, 1118
Hpy188I TCNGA 4 cut(s) 71, 99, 442, 880
Hpy188III TCNNGA 5 cut(s) 157, 413, 704, 954, 1037
Hpy8I GTNNAC 6 cut(s) 186, 231, 538, 590, 925, 1118
HpyAV CCTTC 3 cut(s) 111, 262, 928
HpyCH4III ACNGT 6 cut(s) 27, 221, 279, 301, 806, 991
HpyCH4IV ACGT 2 cut(s) 444, 624
HpyCH4V TGCA 4 cut(s) 132, 409, 850, 884
HpyF10VI GCNNNNNNNGC 7 cut(s) 14, 481, 525, 554, 715, 791, 817
HpyF3I CTNAG 6 cut(s) 455, 530, 735, 786, 918, 1063
HpySE526I ACGT 2 cut(s) 444, 624
Hsp92I GRCGYC 2 cut(s) 444, 836
Hsp92II CATG 4 cut(s) 245, 401, 515, 824
HspAI GCGC 6 cut(s) 162, 353, 484, 716, 772, 836
KasI GGCGCC 1 cut(s) 835
Kpn2I TCCGGA 1 cut(s) 156
KpnI GGTACC 1 cut(s) 744
KroI GCCGGC 1 cut(s) 774
KroNI GCCGGC 1 cut(s) 776
Kzo9I GATC 7 cut(s) 170, 343, 400, 415, 572, 594, 651
LmnI GCTCC 5 cut(s) 159, 480, 565, 799, 1013
Lsp1109I GCAGC 3 cut(s) 342, 473, 560
LweI GCATC 8 cut(s) 132, 358, 418, 515, 544, 759, 781, 871
MaeI CTAG 4 cut(s) 258, 335, 1059, 1123
MaeII ACGT 2 cut(s) 444, 624
MaeIII GTNAC 2 cut(s) 215, 841
MalI GATC 7 cut(s) 172, 345, 402, 417, 574, 596, 653
MboI GATC 7 cut(s) 170, 343, 400, 415, 572, 594, 651
MboII GAAGA 5 cut(s) 56, 633, 694, 697, 943
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 170
MhlI GDGCHC 1 cut(s) 1018
MlsI TGGCCA 1 cut(s) 519
MluCI AATT 3 cut(s) 100, 321, 1047
MluNI TGGCCA 1 cut(s) 519
Mly113I GGCGCC 1 cut(s) 836
MlyI GAGTC 2 cut(s) 201, 992
MmeI TCCRAC 1 cut(s) 313
Mox20I TGGCCA 1 cut(s) 519
MroI TCCGGA 1 cut(s) 156
MroNI GCCGGC 1 cut(s) 774
MscI TGGCCA 1 cut(s) 519
MseI TTAA 1 cut(s) 1046
MslI CAYNNNNRTG 1 cut(s) 495
Msp20I TGGCCA 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 551
MspI CCGG 9 cut(s) 77, 157, 304, 350, 404, 692, 775, 839, 854
MspR9I CCNGG 3 cut(s) 78, 672, 781
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 2 cut(s) 672, 781
MvnI CGCG 1 cut(s) 955
MwoI GCNNNNNNNGC 7 cut(s) 14, 481, 525, 554, 715, 791, 817
NaeI GCCGGC 1 cut(s) 776
NarI GGCGCC 1 cut(s) 836
NciI CCSGG 1 cut(s) 78
NdeII GATC 7 cut(s) 170, 343, 400, 415, 572, 594, 651
NgoMIV GCCGGC 1 cut(s) 774
NlaIII CATG 4 cut(s) 245, 401, 515, 824
NlaIV GGNNCC 4 cut(s) 476, 669, 742, 837
NmeAIII GCCGAG 1 cut(s) 1116
NmuCI GTSAC 1 cut(s) 215
NruI TCGCGA 1 cut(s) 955
OliI CACNNNNGTG 1 cut(s) 495
PaeR7I CTCGAG 1 cut(s) 372
PasI CCCWGGG 1 cut(s) 780
PceI AGGCCT 1 cut(s) 943
PcsI WCGNNNNNNNCGW 1 cut(s) 952
PdiI GCCGGC 1 cut(s) 776
PfeI GAWTC 5 cut(s) 64, 149, 459, 508, 700
PinAI ACCGGT 1 cut(s) 691
PkrI GCNGC 4 cut(s) 357, 488, 550, 973
Ple19I CGATCG 1 cut(s) 418
PleI GAGTC 2 cut(s) 200, 992
PluTI GGCGCC 1 cut(s) 839
PpsI GAGTC 2 cut(s) 200, 992
PpuMI RGGWCCY 1 cut(s) 667
PshAI GACNNNNGTC 1 cut(s) 191
Psp124BI GAGCTC 1 cut(s) 1018
Psp1406I AACGTT 1 cut(s) 624
Psp5II RGGWCCY 1 cut(s) 667
Psp6I CCWGG 2 cut(s) 670, 779
PspEI GGTNACC 2 cut(s) 215, 841
PspFI CCCAGC 1 cut(s) 557
PspGI CCWGG 2 cut(s) 670, 779
PspN4I GGNNCC 4 cut(s) 476, 669, 742, 837
PspPI GGNCC 5 cut(s) 275, 590, 667, 777, 914
PspPPI RGGWCCY 1 cut(s) 667
PspXI VCTCGAGB 1 cut(s) 372
PsuI RGATCY 1 cut(s) 170
PvuI CGATCG 1 cut(s) 418
PvuII CAGCTG 1 cut(s) 551
RruI TCGCGA 1 cut(s) 955
RsaI GTAC 4 cut(s) 204, 696, 733, 742
RsaNI GTAC 4 cut(s) 203, 695, 732, 741
RseI CAYNNNNRTG 1 cut(s) 495
SacI GAGCTC 1 cut(s) 1018
SaqAI TTAA 1 cut(s) 1046
SatI GCNGC 4 cut(s) 356, 487, 549, 972
Sau3AI GATC 7 cut(s) 170, 343, 400, 415, 572, 594, 651
Sau96I GGNCC 5 cut(s) 275, 590, 667, 777, 914
SchI GAGTC 2 cut(s) 201, 992
ScrFI CCNGG 3 cut(s) 78, 672, 781
SduI GDGCHC 1 cut(s) 1018
SfaNI GCATC 8 cut(s) 132, 358, 418, 515, 544, 759, 781, 871
SfoI GGCGCC 1 cut(s) 837
Sfr274I CTCGAG 1 cut(s) 372
SinI GGWCC 3 cut(s) 275, 590, 667
SlaI CTCGAG 1 cut(s) 372
SmiMI CAYNNNNRTG 1 cut(s) 495
SmlI CTYRAG 4 cut(s) 32, 372, 756, 909
SmoI CTYRAG 4 cut(s) 32, 372, 756, 909
Sse9I AATT 3 cut(s) 100, 321, 1047
SseBI AGGCCT 1 cut(s) 943
SsiI CCGC 3 cut(s) 563, 800, 971
SspDI GGCGCC 1 cut(s) 835
SspMI CTAG 4 cut(s) 258, 335, 1059, 1123
SstI GAGCTC 1 cut(s) 1018
StuI AGGCCT 1 cut(s) 943
StyD4I CCNGG 3 cut(s) 76, 670, 779
StyI CCWWGG 2 cut(s) 209, 478
TaaI ACNGT 6 cut(s) 27, 221, 279, 301, 806, 991
TaiI ACGT 2 cut(s) 447, 627
TaqI TCGA 4 cut(s) 373, 414, 680, 870
TaqII GACCGA 1 cut(s) 607
TasI AATT 3 cut(s) 100, 321, 1047
TauI GCSGC 1 cut(s) 974
TfiI GAWTC 5 cut(s) 64, 149, 459, 508, 700
Tru1I TTAA 1 cut(s) 1046
Tru9I TTAA 1 cut(s) 1046
TseFI GTSAC 1 cut(s) 215
TseI GCWGC 3 cut(s) 355, 486, 548
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 141, 483
VpaK11BI GGWCC 3 cut(s) 275, 590, 667
XapI RAATTY 1 cut(s) 100
XcmI CCANNNNNNNNNTGG 1 cut(s) 823
XhoI CTCGAG 1 cut(s) 372
XmiI GTMKAC 1 cut(s) 924
XspI CTAG 4 cut(s) 258, 335, 1059, 1123
ZraI GACGTC 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.