Rmu_sc0003094.1_g000010

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003094.1
OG0000172
Physical Location & Seq
Reverse (-)
64083 .. 65318
1236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003094.1_g000010.1.cds

Sequence Viewer

Length: 1236 bp
atggctgctgctattgcatccatgacggccaggctagcgaccaaactgtcgctcagagaaggagaagaaccagtggacttggggaatctcagggttccggggaaggagtttttggctcgcaacttttacttggtgggcagattgaacacttgtagggcagtagtgatggagtctttcaggagtgttgtgcggtcgatgtggaggctgtcggggacagtggaggtccaaccacggggtgaacggtttctgtttacgttcactcatgaaagggatgttgctcgtgtgaagaagggtggtctgtggggctttcagcgcgctatgatccttctgaatgactatgatggcttctcagagatctctgccgtgaaactggattttgtttggatctgggttacactgcagggcatccctccgggtattttgacggaacctaccgtccggttggttggggggacgattggagaggttctggaggtggaccggttggcgctgcgcaggagtgaagctcgtgtccggcttgttctctccattaacgatccggtaaagctggatcgcagggttagggtttctcctattgacgtcctaacctttcattttaagtatgaaaggctcctaggtcggtgtcgttcttgttctctgctcaatcatggcgggcagcgatgccctagggaggaggaatcggagactgatattgtggtggagacaaggtcacagccggcgacggggttgatcattccagccattgtctttagggcaaacacccaaccaactatttctccttcacttctctctgctttcaaggttcctagcatgatgaagaagaaatccgtgcatattcgatcgcttccggaacttgttacgagctctgggactgagggcacttctgcttctacatgtgtggtaggggtacgtcgtcccaaggaggaggaggcttcagaggaaggcaagcgcgctaaacatagcttggatcttgttccggctaacctgcagccagaaaatctgggtttcaaactttctccaaaaggtctggttgaagtgccggtgactcaggctcccaaggtctacaagaagaagggtaggcctcggggacagtgcaacaaggtaaaaacttcgaaggcagcgtccatttgtggtggttctgtggccatgatgtcggggtctgttgctaaagggtctgatggtatacatggggtgcaggatgggcaggattcagtgcccatttcccagtctgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

411

Amino Acids

45.04

Weight (kDa)

9.79

Isoelectric Point (pI)

48.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AatII GACGTC 1 cut(s) 582
Acc16I TGCGCA 1 cut(s) 494
Acc36I ACCTGC 1 cut(s) 993
AccI GTMKAC 2 cut(s) 1062, 1183
AccII CGCG 2 cut(s) 315, 951
AccIII TCCGGA 1 cut(s) 847
AciI CCGC 2 cut(s) 190, 651
AclWI GGATC 5 cut(s) 316, 392, 530, 558, 975
AcoI YGGCCR 2 cut(s) 27, 1143
AcuI CTGAAG 1 cut(s) 918
AcyI GRCGYC 1 cut(s) 579
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 1 cut(s) 909
AfiI CCNNNNNNNGG 4 cut(s) 232, 670, 722, 1230
AflIII ACRYGT 1 cut(s) 893
AgeI ACCGGT 1 cut(s) 480
AgsI TTSAA 4 cut(s) 145, 799, 1009, 1034
AjnI CCWGG 1 cut(s) 29
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 4 cut(s) 506, 547, 864, 963
AluI AGCT 4 cut(s) 506, 547, 864, 963
Alw21I GWGCWC 1 cut(s) 866
Alw26I GTCTC 2 cut(s) 677, 695
AlwI GGATC 5 cut(s) 316, 392, 530, 558, 975
Ama87I CYCGRG 1 cut(s) 1083
Aor13HI TCCGGA 1 cut(s) 847
AoxI GGCC 3 cut(s) 27, 1079, 1143
ApeKI GCWGC 6 cut(s) 5, 8, 490, 655, 988, 1118
ArsI GACNNNNNNTTYG 2 cut(s) 1106, 1138
AsiGI ACCGGT 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 243
AspA2I CCTAGG 2 cut(s) 613, 665
AspLEI GCGC 6 cut(s) 315, 317, 490, 495, 951, 953
AspS9I GGNCC 2 cut(s) 223, 478
AsuC2I CCSGG 2 cut(s) 99, 414
AsuHPI GGTGA 2 cut(s) 248, 1054
AsuII TTCGAA 1 cut(s) 1112
AsuNHI GCTAGC 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 1083
AvaII GGWCC 2 cut(s) 223, 478
AvrII CCTAGG 2 cut(s) 613, 665
BaeGI GKGCMC 2 cut(s) 881, 1218
BalI TGGCCA 1 cut(s) 1145
BanII GRGCYC 1 cut(s) 866
BauI CACGAG 2 cut(s) 279, 507
Bbv12I GWGCWC 1 cut(s) 866
BbvI GCAGC 4 cut(s) 477, 667, 1000, 1130
BccI CCATC 4 cut(s) 160, 335, 1172, 1193
BceAI ACGGC 2 cut(s) 42, 347
BciT130I CCWGG 1 cut(s) 31
BclI TGATCA 1 cut(s) 729
BcnI CCSGG 2 cut(s) 99, 414
BcoDI GTCTC 2 cut(s) 677, 695
BfaI CTAG 4 cut(s) 35, 614, 666, 807
BfmI CTRYAG 2 cut(s) 398, 986
BfoI RGCGCY 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 993
BglII AGATCT 1 cut(s) 354
BisI GCNGC 6 cut(s) 6, 9, 491, 656, 989, 1119
BlnI CCTAGG 2 cut(s) 613, 665
BlsI GCNGC 6 cut(s) 7, 10, 492, 657, 990, 1120
Bme1390I CCNGG 3 cut(s) 31, 99, 414
Bme18I GGWCC 2 cut(s) 223, 478
BmeT110I CYCGRG 1 cut(s) 1083
BmgT120I GGNCC 2 cut(s) 223, 478
BmiI GGNNCC 5 cut(s) 96, 429, 611, 804, 1053
BmrFI CCNGG 3 cut(s) 31, 99, 414
BmrI ACTGGG 1 cut(s) 1219
BmsI GCATC 3 cut(s) 26, 414, 650
BmtI GCTAGC 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 1219
BplI GAGNNNNNCTC 2 cut(s) 490, 522
BpmI CTGGAG 1 cut(s) 491
Bpu14I TTCGAA 1 cut(s) 1112
BpuMI CCSGG 2 cut(s) 99, 414
BsaHI GRCGYC 1 cut(s) 579
BsaJI CCNNGG 7 cut(s) 98, 230, 613, 665, 918, 1056, 1082
BsaWI WCCGGW 4 cut(s) 438, 480, 538, 847
BsaXI ACNNNNNCTCC 6 cut(s) 692, 722, 760, 790, 1036, 1066
Bsc4I CCNNNNNNNGG 4 cut(s) 232, 670, 722, 1230
Bse118I RCCGGY 3 cut(s) 480, 715, 1039
Bse1I ACTGG 3 cut(s) 71, 375, 1225
BseAI TCCGGA 1 cut(s) 847
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 7 cut(s) 98, 230, 613, 665, 918, 1056, 1082
BseGI GGATG 4 cut(s) 17, 277, 405, 1204
BseLI CCNNNNNNNGG 4 cut(s) 232, 670, 722, 1230
BseMII CTCAG 5 cut(s) 67, 103, 363, 864, 1061
BseNI ACTGG 3 cut(s) 71, 375, 1225
BsePI GCGCGC 2 cut(s) 313, 949
BseRI GAGGAG 3 cut(s) 686, 938, 941
BseSI GKGCMC 2 cut(s) 881, 1218
BseXI GCAGC 4 cut(s) 477, 667, 1000, 1130
BsgI GTGCAG 1 cut(s) 1214
Bsh1236I CGCG 2 cut(s) 315, 951
Bsh1285I CGRYCG 2 cut(s) 194, 842
BshFI GGCC 3 cut(s) 29, 1081, 1145
BshTI ACCGGT 1 cut(s) 480
BsiEI CGRYCG 2 cut(s) 194, 842
BsiHKAI GWGCWC 1 cut(s) 866
BsiHKCI CYCGRG 1 cut(s) 1083
BslFI GGGAC 5 cut(s) 226, 466, 883, 900, 1101
BslI CCNNNNNNNGG 4 cut(s) 232, 670, 722, 1230
BsmAI GTCTC 2 cut(s) 677, 695
BsmFI GGGAC 5 cut(s) 226, 466, 883, 900, 1101
BsnI GGCC 3 cut(s) 29, 1081, 1145
BsoBI CYCGRG 1 cut(s) 1083
Bsp119I TTCGAA 1 cut(s) 1112
Bsp1286I GDGCHC 3 cut(s) 866, 881, 1218
Bsp13I TCCGGA 1 cut(s) 847
Bsp143I GATC 8 cut(s) 321, 354, 384, 535, 550, 729, 839, 967
BspACI CCGC 2 cut(s) 190, 651
BspANI GGCC 3 cut(s) 29, 1081, 1145
BspCNI CTCAG 5 cut(s) 66, 102, 362, 865, 1060
BspEI TCCGGA 1 cut(s) 847
BspFNI CGCG 2 cut(s) 315, 951
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 5 cut(s) 96, 429, 611, 804, 1053
BspMAI CTGCAG 2 cut(s) 402, 990
BspMI ACCTGC 1 cut(s) 993
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 5 cut(s) 316, 392, 530, 558, 975
BspT104I TTCGAA 1 cut(s) 1112
BsrFI RCCGGY 3 cut(s) 480, 715, 1039
BsrI ACTGG 3 cut(s) 71, 375, 1225
BssAI RCCGGY 3 cut(s) 480, 715, 1039
BssECI CCNNGG 7 cut(s) 98, 230, 613, 665, 918, 1056, 1082
BssHII GCGCGC 2 cut(s) 313, 949
BssMI GATC 8 cut(s) 321, 354, 384, 535, 550, 729, 839, 967
BssNAI GTATAC 1 cut(s) 1184
BssNI GRCGYC 1 cut(s) 579
BssSI CACGAG 2 cut(s) 279, 507
BssT1I CCWWGG 4 cut(s) 613, 665, 918, 1056
Bst1107I GTATAC 1 cut(s) 1184
Bst2BI CACGAG 2 cut(s) 279, 507
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 5 cut(s) 48, 217, 243, 436, 1092
BstACI GRCGYC 1 cut(s) 579
BstBI TTCGAA 1 cut(s) 1112
BstC8I GCNNGC 7 cut(s) 36, 118, 315, 653, 717, 947, 951
BstDEI CTNAG 5 cut(s) 53, 89, 349, 873, 1047
BstDSI CCRYGG 1 cut(s) 230
BstF5I GGATG 4 cut(s) 17, 277, 405, 1204
BstFNI CGCG 2 cut(s) 315, 951
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 6 cut(s) 315, 317, 490, 495, 951, 953
BstKTI GATC 8 cut(s) 324, 357, 387, 538, 553, 732, 842, 970
BstMAI GTCTC 2 cut(s) 677, 695
BstMBI GATC 8 cut(s) 321, 354, 384, 535, 550, 729, 839, 967
BstMCI CGRYCG 2 cut(s) 194, 842
BstMWI GCNNNNNNNGC 4 cut(s) 14, 35, 312, 1201
BstNI CCWGG 1 cut(s) 31
BstNSI RCATGY 1 cut(s) 897
BstSCI CCNGG 3 cut(s) 29, 97, 412
BstSFI CTRYAG 2 cut(s) 398, 986
BstSLI GKGCMC 2 cut(s) 881, 1218
BstUI CGCG 2 cut(s) 315, 951
BstV1I GCAGC 4 cut(s) 477, 667, 1000, 1130
BstX2I RGATCY 3 cut(s) 354, 384, 967
BstYI RGATCY 3 cut(s) 354, 384, 967
BstZ17I GTATAC 1 cut(s) 1184
BsuRI GGCC 3 cut(s) 29, 1081, 1145
BtgI CCRYGG 1 cut(s) 230
BtgZI GCGATG 1 cut(s) 673
BtsCI GGATG 4 cut(s) 17, 277, 405, 1204
BtsI GCAGTG 1 cut(s) 395
BtsIMutI CAGTG 5 cut(s) 78, 222, 395, 1097, 1218
BveI ACCTGC 1 cut(s) 993
Cac8I GCNNGC 7 cut(s) 36, 118, 315, 653, 717, 947, 951
CciI TCATGA 1 cut(s) 262
CfoI GCGC 6 cut(s) 315, 317, 490, 495, 951, 953
Cfr10I RCCGGY 3 cut(s) 480, 715, 1039
Cfr13I GGNCC 2 cut(s) 223, 478
CseI GACGC 1 cut(s) 1110
Csp6I GTAC 1 cut(s) 908
CspAI ACCGGT 1 cut(s) 480
CviAII CATG 7 cut(s) 22, 263, 647, 811, 894, 1147, 1187
CviQI GTAC 1 cut(s) 908
DdeI CTNAG 5 cut(s) 53, 89, 349, 873, 1047
DpnI GATC 8 cut(s) 323, 356, 386, 537, 552, 731, 841, 969
DpnII GATC 8 cut(s) 321, 354, 384, 535, 550, 729, 839, 967
DraIII CACNNNGTG 1 cut(s) 236
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 2 cut(s) 27, 1143
Ecl136II GAGCTC 1 cut(s) 864
Eco130I CCWWGG 4 cut(s) 613, 665, 918, 1056
Eco147I AGGCCT 1 cut(s) 1081
Eco24I GRGCYC 1 cut(s) 866
Eco47I GGWCC 2 cut(s) 223, 478
Eco53kI GAGCTC 1 cut(s) 864
Eco57I CTGAAG 1 cut(s) 918
Eco88I CYCGRG 1 cut(s) 1083
EcoICRI GAGCTC 1 cut(s) 864
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 4 cut(s) 613, 665, 918, 1056
EcoT38I GRGCYC 1 cut(s) 866
ErhI CCWWGG 4 cut(s) 613, 665, 918, 1056
FaeI CATG 7 cut(s) 25, 266, 650, 814, 897, 1150, 1190
FaqI GGGAC 5 cut(s) 226, 466, 883, 900, 1101
FatI CATG 7 cut(s) 21, 262, 646, 810, 893, 1146, 1186
FauI CCCGC 1 cut(s) 644
FbaI TGATCA 1 cut(s) 729
FblI GTMKAC 2 cut(s) 1062, 1183
Fnu4HI GCNGC 6 cut(s) 6, 9, 491, 656, 989, 1119
FokI GGATG 4 cut(s) 4, 284, 392, 1211
FriOI GRGCYC 1 cut(s) 866
Fsp4HI GCNGC 6 cut(s) 6, 9, 491, 656, 989, 1119
FspBI CTAG 4 cut(s) 35, 614, 666, 807
FspI TGCGCA 1 cut(s) 494
GlaI GCGC 6 cut(s) 314, 316, 489, 494, 950, 952
GluI GCNGC 6 cut(s) 6, 9, 491, 656, 989, 1119
GsuI CTGGAG 1 cut(s) 491
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 3 cut(s) 29, 1081, 1145
HgaI GACGC 1 cut(s) 1110
HhaI GCGC 6 cut(s) 315, 317, 490, 495, 951, 953
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 7 cut(s) 25, 266, 650, 814, 897, 1150, 1190
Hin6I GCGC 6 cut(s) 313, 315, 488, 493, 949, 951
HinP1I GCGC 6 cut(s) 313, 315, 488, 493, 949, 951
HinfI GANTC 5 cut(s) 85, 170, 677, 1045, 1208
HphI GGTGA 2 cut(s) 248, 1054
Hpy166II GTNNAC 7 cut(s) 76, 239, 252, 258, 478, 1063, 1184
Hpy188I TCNGA 6 cut(s) 56, 330, 352, 682, 937, 1177
Hpy188III TCNNGA 4 cut(s) 178, 263, 470, 848
Hpy8I GTNNAC 7 cut(s) 76, 239, 252, 258, 478, 1063, 1184
Hpy99I CGWCG 2 cut(s) 724, 915
HpyAV CCTTC 8 cut(s) 53, 97, 283, 335, 789, 935, 1066, 1108
HpyCH4III ACNGT 5 cut(s) 48, 217, 243, 436, 1092
HpyCH4IV ACGT 3 cut(s) 254, 579, 910
HpyCH4V TGCA 6 cut(s) 17, 400, 832, 988, 1095, 1195
HpyF10VI GCNNNNNNNGC 4 cut(s) 14, 35, 312, 1201
HpyF3I CTNAG 5 cut(s) 53, 89, 349, 873, 1047
HpySE526I ACGT 3 cut(s) 254, 579, 910
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 7 cut(s) 25, 266, 650, 814, 897, 1150, 1190
HspAI GCGC 6 cut(s) 313, 315, 488, 493, 949, 951
Kpn2I TCCGGA 1 cut(s) 847
KroI GCCGGC 1 cut(s) 715
KroNI GCCGGC 1 cut(s) 717
Ksp22I TGATCA 1 cut(s) 729
Kzo9I GATC 8 cut(s) 321, 354, 384, 535, 550, 729, 839, 967
LmnI GCTCC 2 cut(s) 615, 1057
Lsp1109I GCAGC 4 cut(s) 477, 667, 1000, 1130
LweI GCATC 3 cut(s) 26, 414, 650
MaeI CTAG 4 cut(s) 35, 614, 666, 807
MaeII ACGT 3 cut(s) 254, 579, 910
MaeIII GTNAC 4 cut(s) 391, 708, 856, 1042
MalI GATC 8 cut(s) 323, 356, 386, 537, 552, 731, 841, 969
MboI GATC 8 cut(s) 321, 354, 384, 535, 550, 729, 839, 967
MboII GAAGA 5 cut(s) 77, 298, 829, 832, 1081
MflI RGATCY 3 cut(s) 354, 384, 967
MhlI GDGCHC 3 cut(s) 866, 881, 1218
MlsI TGGCCA 1 cut(s) 1145
MluNI TGGCCA 1 cut(s) 1145
MlyI GAGTC 2 cut(s) 179, 1039
MmeI TCCRAC 1 cut(s) 250
Mox20I TGGCCA 1 cut(s) 1145
MroI TCCGGA 1 cut(s) 847
MroNI GCCGGC 1 cut(s) 715
MroXI GAANNNNTTC 1 cut(s) 243
MscI TGGCCA 1 cut(s) 1145
MseI TTAA 2 cut(s) 531, 597
Msp20I TGGCCA 1 cut(s) 1145
MspR9I CCNGG 3 cut(s) 31, 99, 414
MteI GCGCNGCGC 1 cut(s) 491
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 2 cut(s) 315, 951
MwoI GCNNNNNNNGC 4 cut(s) 14, 35, 312, 1201
NaeI GCCGGC 1 cut(s) 717
NciI CCSGG 2 cut(s) 99, 414
NdeII GATC 8 cut(s) 321, 354, 384, 535, 550, 729, 839, 967
NgoMIV GCCGGC 1 cut(s) 715
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 7 cut(s) 25, 266, 650, 814, 897, 1150, 1190
NlaIV GGNNCC 5 cut(s) 96, 429, 611, 804, 1053
NmuCI GTSAC 2 cut(s) 708, 1042
NsbI TGCGCA 1 cut(s) 494
NspI RCATGY 1 cut(s) 897
NspV TTCGAA 1 cut(s) 1112
PagI TCATGA 1 cut(s) 262
PauI GCGCGC 2 cut(s) 313, 949
PceI AGGCCT 1 cut(s) 1081
PciI ACATGT 1 cut(s) 893
PcsI WCGNNNNNNNCGW 1 cut(s) 1118
PdiI GCCGGC 1 cut(s) 717
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 3 cut(s) 85, 677, 1208
PflFI GACNNNGTC 1 cut(s) 706
PinAI ACCGGT 1 cut(s) 480
PkrI GCNGC 6 cut(s) 7, 10, 492, 657, 990, 1120
Ple19I CGATCG 1 cut(s) 842
PleI GAGTC 2 cut(s) 178, 1039
PpsI GAGTC 2 cut(s) 178, 1039
PscI ACATGT 1 cut(s) 893
Psp124BI GAGCTC 1 cut(s) 866
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 5 cut(s) 96, 429, 611, 804, 1053
PspPI GGNCC 2 cut(s) 223, 478
PstI CTGCAG 2 cut(s) 402, 990
PsuI RGATCY 3 cut(s) 354, 384, 967
PsyI GACNNNGTC 1 cut(s) 706
PteI GCGCGC 2 cut(s) 313, 949
PvuI CGATCG 1 cut(s) 842
RsaI GTAC 1 cut(s) 909
RsaNI GTAC 1 cut(s) 908
SacI GAGCTC 1 cut(s) 866
SaqAI TTAA 2 cut(s) 531, 597
SatI GCNGC 6 cut(s) 6, 9, 491, 656, 989, 1119
Sau3AI GATC 8 cut(s) 321, 354, 384, 535, 550, 729, 839, 967
Sau96I GGNCC 2 cut(s) 223, 478
SchI GAGTC 2 cut(s) 179, 1039
ScrFI CCNGG 3 cut(s) 31, 99, 414
SduI GDGCHC 3 cut(s) 866, 881, 1218
SfaNI GCATC 3 cut(s) 26, 414, 650
SfcI CTRYAG 2 cut(s) 398, 986
SfuI TTCGAA 1 cut(s) 1112
SinI GGWCC 2 cut(s) 223, 478
SseBI AGGCCT 1 cut(s) 1081
SsiI CCGC 2 cut(s) 190, 651
SspMI CTAG 4 cut(s) 35, 614, 666, 807
SstI GAGCTC 1 cut(s) 866
StuI AGGCCT 1 cut(s) 1081
StyD4I CCNGG 3 cut(s) 29, 97, 412
StyI CCWWGG 4 cut(s) 613, 665, 918, 1056
TaaI ACNGT 5 cut(s) 48, 217, 243, 436, 1092
TaiI ACGT 3 cut(s) 257, 582, 913
TaqI TCGA 3 cut(s) 194, 838, 1112
TfiI GAWTC 3 cut(s) 85, 677, 1208
Tru1I TTAA 2 cut(s) 531, 597
Tru9I TTAA 2 cut(s) 531, 597
TscAI CASTG 5 cut(s) 78, 222, 402, 1097, 1218
TseFI GTSAC 2 cut(s) 708, 1042
TseI GCWGC 6 cut(s) 5, 8, 490, 655, 988, 1118
Tsp45I GTSAC 2 cut(s) 708, 1042
TspDTI ATGAA 4 cut(s) 279, 581, 618, 830
TspGWI ACGGA 2 cut(s) 440, 817
TspRI CASTG 5 cut(s) 78, 222, 402, 1097, 1218
Tth111I GACNNNGTC 1 cut(s) 706
VpaK11BI GGWCC 2 cut(s) 223, 478
XceI RCATGY 1 cut(s) 897
XmaJI CCTAGG 2 cut(s) 613, 665
XmiI GTMKAC 2 cut(s) 1062, 1183
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 4 cut(s) 35, 614, 666, 807
ZraI GACGTC 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.