FvH4_5g37061

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000172
Physical Location & Seq
Reverse (-)
27128121 .. 27130265
2145 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37061.t1

Sequence Viewer

Length: 1062 bp
ATGGGTGGAGAGCAGTGGCGGGTAGTGGCTTGGATTAAGTTTTCGGGTCTGTATATTAGGTTGTTGGCGGTGTCGATTTCGATTGGGTCTTGGTTCGTATTTCAAGGAGGCATAGATGGGGGCTTGGAGTCGGCTTCTGGTCTGACTGATGGTCTGGTTGGTGGTAGGTTAGTCGTCGATGGTGAGAGGGAGGGAAGCGACTGTCGCTACGTGGATGATTGGGTGACCCGTGGGGTGGCAGCTACACTGAAGAAGGAGTGCCCATACTGTTGGGTTAGGGTTATACTGGTTGTGCGGTGTCCTTCTTCCATGGCAGTCTCCATGTCAGCCTCCACTGTTTCCATGATGGCAAGGCTCATCTCAAAATTATCTCATAGCAACCAAGACAAACCTGTTGACCTTGGAGGAGATCGTTTTCTCTTCACTTTCACCAATGAAAGAGATGTGATCCGTGTCAAGAAAGGAGGACGATGGGGCTACCAAAGAGTTATGATTCTCTTGAATGATTATGATGCTTCTAACATAATGGTTGTGCCTCTTGATTTTGTTTGGATTTGGGTTGAAATACAAGACTTACCAGCGGCACTCATGACGGCGGCAACTACGTGCTTGGTTGACGAGATGGGCGCGACATTCATAACGGTCTGGTCCGTGTGCGTCTTACCCTCCCTCAACGACCCAGTGAGACTGGAAAGAAGAATTGGGATCTCCCCTAAGGATGTTTTGGAGCTGCCTTCTCCAGTTGCTCCCCCCTCGATTACACCTCATGTTGCACCCCTAATGGTTTTTCGTGATAACACTCATATTCCTATTGCAGCCACACCTCCTATCCCAAAAGACAAGAGGACGGTCACCATCAGAGAAGTCCCCACCTTCCCTTCTCTTACAAAGATCACGAGATTTCGTCGAGAATGGGAGGATGATGAAGAGGCATTGCTCGGACCAAGAAATCTCCCAAGAAGAGGGGCCGCCCCTTGTGGTAGCAGAAACAAGAAGAAGTGGTTAGGAGATAGTTCTGATTCCATGGCACCTGGATTGGTGATGGATGAGAGTCCAAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

354

Amino Acids

39.07

Weight (kDa)

8.13

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1027
AccII CGCG 1 cut(s) 629
AciI CCGC 6 cut(s) 19, 68, 295, 581, 596, 969
AclWI GGATC 2 cut(s) 442, 713
AcuI CTGAAG 1 cut(s) 269
AfiI CCNNNNNNNGG 2 cut(s) 235, 962
AgsI TTSAA 3 cut(s) 104, 502, 563
AhdI GACNNNNNGTC 1 cut(s) 150
AjnI CCWGG 1 cut(s) 1030
AjuI GAANNNNNNNTTGG 2 cut(s) 684, 716
AluBI AGCT 2 cut(s) 242, 730
AluI AGCT 2 cut(s) 242, 730
Alw26I GTCTC 2 cut(s) 322, 679
AlwI GGATC 2 cut(s) 442, 713
AoxI GGCC 1 cut(s) 966
ApeKI GCWGC 3 cut(s) 239, 730, 815
AspLEI GCGC 1 cut(s) 629
AspS9I GGNCC 3 cut(s) 648, 941, 966
AsuHPI GGTGA 5 cut(s) 194, 235, 421, 844, 1051
AvaII GGWCC 2 cut(s) 648, 941
AxyI CCTNAGG 1 cut(s) 714
BaeGI GKGCMC 1 cut(s) 263
BanI GGYRCC 1 cut(s) 1027
BauI CACGAG 1 cut(s) 895
BbvI GCAGC 3 cut(s) 251, 717, 827
BccI CCATC 8 cut(s) 110, 143, 173, 340, 465, 616, 863, 1036
BceAI ACGGC 1 cut(s) 609
BciT130I CCWGG 1 cut(s) 1032
BcoDI GTCTC 2 cut(s) 322, 679
BisI GCNGC 6 cut(s) 240, 582, 597, 731, 816, 969
BlsI GCNGC 6 cut(s) 241, 583, 598, 732, 817, 970
Bme1390I CCNGG 1 cut(s) 1032
Bme18I GGWCC 2 cut(s) 648, 941
BmeRI GACNNNNNGTC 1 cut(s) 150
BmgT120I GGNCC 3 cut(s) 648, 941, 966
BmiI GGNNCC 2 cut(s) 967, 1029
BmrFI CCNGG 1 cut(s) 1032
BmrI ACTGGG 1 cut(s) 674
BmsI GCATC 1 cut(s) 502
BmuI ACTGGG 1 cut(s) 674
BpmI CTGGAG 1 cut(s) 723
BsaAI YACGTR 2 cut(s) 211, 606
BsaJI CCNNGG 4 cut(s) 229, 309, 400, 1023
Bsc4I CCNNNNNNNGG 2 cut(s) 235, 962
Bse1I ACTGG 4 cut(s) 291, 680, 693, 740
Bse21I CCTNAGG 1 cut(s) 714
Bse3DI GCAATG 1 cut(s) 932
BseBI CCWGG 1 cut(s) 1032
BseDI CCNNGG 4 cut(s) 229, 309, 400, 1023
BseGI GGATG 4 cut(s) 220, 724, 925, 1051
BseLI CCNNNNNNNGG 2 cut(s) 235, 962
BseMI GCAATG 1 cut(s) 932
BseNI ACTGG 4 cut(s) 291, 680, 693, 740
BseRI GAGGAG 1 cut(s) 420
BseSI GKGCMC 1 cut(s) 263
BseXI GCAGC 3 cut(s) 251, 717, 827
Bsh1236I CGCG 1 cut(s) 629
BshFI GGCC 1 cut(s) 968
BshNI GGYRCC 1 cut(s) 1027
BslFI GGGAC 1 cut(s) 851
BslI CCNNNNNNNGG 2 cut(s) 235, 962
BsmAI GTCTC 2 cut(s) 322, 679
BsmFI GGGAC 1 cut(s) 851
BsnI GGCC 1 cut(s) 968
Bsp1286I GDGCHC 1 cut(s) 263
Bsp143I GATC 4 cut(s) 409, 447, 705, 891
Bsp19I CCATGG 2 cut(s) 309, 1023
BspACI CCGC 6 cut(s) 19, 68, 295, 581, 596, 969
BspANI GGCC 1 cut(s) 968
BspFNI CGCG 1 cut(s) 629
BspHI TCATGA 1 cut(s) 588
BspLI GGNNCC 2 cut(s) 967, 1029
BspPI GGATC 2 cut(s) 442, 713
BspT107I GGYRCC 1 cut(s) 1027
BsrDI GCAATG 1 cut(s) 932
BsrI ACTGG 4 cut(s) 291, 680, 693, 740
BssECI CCNNGG 4 cut(s) 229, 309, 400, 1023
BssMI GATC 4 cut(s) 409, 447, 705, 891
BssSI CACGAG 1 cut(s) 895
BssT1I CCWWGG 3 cut(s) 309, 400, 1023
Bst2BI CACGAG 1 cut(s) 895
Bst2UI CCWGG 1 cut(s) 1032
Bst4CI ACNGT 5 cut(s) 203, 269, 337, 643, 850
Bst6I CTCTTC 3 cut(s) 425, 921, 955
BstBAI YACGTR 2 cut(s) 211, 606
BstDEI CTNAG 1 cut(s) 714
BstDSI CCRYGG 3 cut(s) 229, 309, 1023
BstEII GGTNACC 2 cut(s) 223, 850
BstF5I GGATG 4 cut(s) 220, 724, 925, 1051
BstFNI CGCG 1 cut(s) 629
BstHHI GCGC 1 cut(s) 629
BstKTI GATC 4 cut(s) 412, 450, 708, 894
BstMAI GTCTC 2 cut(s) 322, 679
BstMBI GATC 4 cut(s) 409, 447, 705, 891
BstMWI GCNNNNNNNGC 1 cut(s) 204
BstNI CCWGG 1 cut(s) 1032
BstPI GGTNACC 2 cut(s) 223, 850
BstSCI CCNGG 1 cut(s) 1030
BstSLI GKGCMC 1 cut(s) 263
BstUI CGCG 1 cut(s) 629
BstV1I GCAGC 3 cut(s) 251, 717, 827
BstX2I RGATCY 1 cut(s) 705
BstXI CCANNNNNNTGG 1 cut(s) 270
BstYI RGATCY 1 cut(s) 705
Bsu36I CCTNAGG 1 cut(s) 714
BsuRI GGCC 1 cut(s) 968
BtgI CCRYGG 3 cut(s) 229, 309, 1023
BtsCI GGATG 4 cut(s) 220, 724, 925, 1051
BtsI GCAGTG 1 cut(s) 20
BtsIMutI CAGTG 4 cut(s) 20, 245, 333, 687
CciI TCATGA 1 cut(s) 588
CfoI GCGC 1 cut(s) 629
Cfr13I GGNCC 3 cut(s) 648, 941, 966
CseI GACGC 1 cut(s) 646
CviAII CATG 6 cut(s) 310, 322, 343, 589, 767, 1024
DdeI CTNAG 1 cut(s) 714
DpnI GATC 4 cut(s) 411, 449, 707, 893
DpnII GATC 4 cut(s) 409, 447, 705, 891
DriI GACNNNNNGTC 1 cut(s) 150
Eam1104I CTCTTC 3 cut(s) 425, 921, 955
Eam1105I GACNNNNNGTC 1 cut(s) 150
EarI CTCTTC 3 cut(s) 425, 921, 955
Eco130I CCWWGG 3 cut(s) 309, 400, 1023
Eco47I GGWCC 2 cut(s) 648, 941
Eco57I CTGAAG 1 cut(s) 269
Eco81I CCTNAGG 1 cut(s) 714
Eco91I GGTNACC 2 cut(s) 223, 850
EcoO65I GGTNACC 2 cut(s) 223, 850
EcoRII CCWGG 1 cut(s) 1030
EcoT14I CCWWGG 3 cut(s) 309, 400, 1023
ErhI CCWWGG 3 cut(s) 309, 400, 1023
FaeI CATG 6 cut(s) 313, 325, 346, 592, 770, 1027
FaqI GGGAC 1 cut(s) 851
FatI CATG 6 cut(s) 309, 321, 342, 588, 766, 1023
FauI CCCGC 1 cut(s) 12
Fnu4HI GCNGC 6 cut(s) 240, 582, 597, 731, 816, 969
FokI GGATG 4 cut(s) 227, 731, 932, 1058
Fsp4HI GCNGC 6 cut(s) 240, 582, 597, 731, 816, 969
GlaI GCGC 1 cut(s) 628
GluI GCNGC 6 cut(s) 240, 582, 597, 731, 816, 969
GsuI CTGGAG 1 cut(s) 723
HaeIII GGCC 1 cut(s) 968
HgaI GACGC 1 cut(s) 646
HhaI GCGC 1 cut(s) 629
Hin1II CATG 6 cut(s) 313, 325, 346, 592, 770, 1027
Hin6I GCGC 1 cut(s) 627
HinP1I GCGC 1 cut(s) 627
HincII GTYRAC 2 cut(s) 397, 616
HindII GTYRAC 2 cut(s) 397, 616
HinfI GANTC 4 cut(s) 128, 493, 1019, 1051
HphI GGTGA 5 cut(s) 194, 235, 421, 844, 1051
Hpy166II GTNNAC 2 cut(s) 397, 616
Hpy188I TCNGA 4 cut(s) 144, 860, 941, 1018
Hpy188III TCNNGA 7 cut(s) 457, 499, 539, 589, 791, 895, 908
Hpy8I GTNNAC 2 cut(s) 397, 616
Hpy99I CGWCG 2 cut(s) 179, 909
HpyAV CCTTC 5 cut(s) 247, 312, 744, 883, 888
HpyCH4III ACNGT 5 cut(s) 203, 269, 337, 643, 850
HpyCH4IV ACGT 2 cut(s) 210, 605
HpyCH4V TGCA 2 cut(s) 773, 815
HpyF10VI GCNNNNNNNGC 1 cut(s) 204
HpyF3I CTNAG 1 cut(s) 714
HpySE526I ACGT 2 cut(s) 210, 605
Hsp92II CATG 6 cut(s) 313, 325, 346, 592, 770, 1027
HspAI GCGC 1 cut(s) 627
Kzo9I GATC 4 cut(s) 409, 447, 705, 891
LmnI GCTCC 2 cut(s) 727, 751
Lsp1109I GCAGC 3 cut(s) 251, 717, 827
LweI GCATC 1 cut(s) 502
MaeII ACGT 2 cut(s) 210, 605
MaeIII GTNAC 2 cut(s) 223, 850
MalI GATC 4 cut(s) 411, 449, 707, 893
MboI GATC 4 cut(s) 409, 447, 705, 891
MboII GAAGA 7 cut(s) 262, 297, 412, 708, 938, 972, 1006
MflI RGATCY 1 cut(s) 705
MhlI GDGCHC 1 cut(s) 263
MluCI AATT 2 cut(s) 365, 699
MlyI GAGTC 2 cut(s) 137, 1060
MseI TTAA 1 cut(s) 36
MspA1I CMGCKG 1 cut(s) 581
MspR9I CCNGG 1 cut(s) 1032
MvaI CCWGG 1 cut(s) 1032
MvnI CGCG 1 cut(s) 629
MwoI GCNNNNNNNGC 1 cut(s) 204
NcoI CCATGG 2 cut(s) 309, 1023
NdeII GATC 4 cut(s) 409, 447, 705, 891
NlaIII CATG 6 cut(s) 313, 325, 346, 592, 770, 1027
NlaIV GGNNCC 2 cut(s) 967, 1029
NmuCI GTSAC 2 cut(s) 223, 850
PagI TCATGA 1 cut(s) 588
PfeI GAWTC 2 cut(s) 493, 1019
PkrI GCNGC 6 cut(s) 241, 583, 598, 732, 817, 970
PleI GAGTC 2 cut(s) 136, 1059
PpsI GAGTC 2 cut(s) 136, 1059
Ppu21I YACGTR 2 cut(s) 211, 606
Psp6I CCWGG 1 cut(s) 1030
PspEI GGTNACC 2 cut(s) 223, 850
PspGI CCWGG 1 cut(s) 1030
PspN4I GGNNCC 2 cut(s) 967, 1029
PspPI GGNCC 3 cut(s) 648, 941, 966
PsuI RGATCY 1 cut(s) 705
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 6 cut(s) 240, 582, 597, 731, 816, 969
Sau3AI GATC 4 cut(s) 409, 447, 705, 891
Sau96I GGNCC 3 cut(s) 648, 941, 966
SchI GAGTC 2 cut(s) 137, 1060
ScrFI CCNGG 1 cut(s) 1032
SduI GDGCHC 1 cut(s) 263
SfaNI GCATC 1 cut(s) 502
SinI GGWCC 2 cut(s) 648, 941
Sse9I AATT 2 cut(s) 365, 699
SsiI CCGC 6 cut(s) 19, 68, 295, 581, 596, 969
StyD4I CCNGG 1 cut(s) 1030
StyI CCWWGG 3 cut(s) 309, 400, 1023
TaaI ACNGT 5 cut(s) 203, 269, 337, 643, 850
TaiI ACGT 2 cut(s) 213, 608
TaqI TCGA 5 cut(s) 74, 80, 177, 755, 907
TasI AATT 2 cut(s) 365, 699
TauI GCSGC 3 cut(s) 584, 599, 971
TfiI GAWTC 2 cut(s) 493, 1019
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 4 cut(s) 20, 252, 340, 687
TseFI GTSAC 2 cut(s) 223, 850
TseI GCWGC 3 cut(s) 239, 730, 815
Tsp45I GTSAC 2 cut(s) 223, 850
TspDTI ATGAA 3 cut(s) 450, 625, 939
TspGWI ACGGA 2 cut(s) 440, 640
TspRI CASTG 4 cut(s) 20, 252, 340, 687
VpaK11BI GGWCC 2 cut(s) 648, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.