Rmu_sc0012075.1_g000003

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012075.1
OG0000172
Physical Location & Seq
Forward (+)
26347 .. 27573
1227 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012075.1_g000003.1.cds

Sequence Viewer

Length: 1158 bp
atggctgcagcgatcgcttccatgactgccagacttgcgaccaagttgtcgctcaaggacggagaagaaccggtttacttggggaatctcagggttccagggaaggagtttttggctcgaaacttctatttggttgggagtcttaacacctgcagggggttggtgctggattcattccggagtgctgtgagatcgatgtggaggttgtctggtaccgtgaaggtccaaccacggggtgaacgttttctgtttacgttcacccatgaaagggatgttgctcgagtgcagaagggtggtccgtggggttttcaacgtgccatgattctcctgaatgattataatggcttctcggagatctctgcagtgaagctggattttgtttggatttgggtgacgttggaaggcatacctccgggtattttgactgaacctactgtccggttggtctgtgggacgattggggaggtgctggaggtggatcgcatagcgctgcgtaggatagatgctcgagtccggcttgttctctctatccatgatccggtgcgctttgatcgtcgggttagggtttctcctgttgatgttctaaccctaaggttcagggtggaggccttggagaatgatgctgtggaagagacgggatcgcagccaggaatgggaccgatcgttccatccctagtctttagggccaacgttcagcactctatttcttcaccgctgctttcttccttcaaggtcccaaagctgaagaggaaggtggtgcagatccgtgaacttccagcactggactctcccgggactgagagtacttcgattcaaactccagtggtggggatgcgtcgtcccagagctgaggatggccctgaagctggtaagtgtaccaaacacggtttggacttggttctgggtgttctccagccggaaaatcttgggctccaagtttctgataccggcctggttgatgggaagtggtctccagccccgaaggtgtacaagaagaagggcaggcctcgtggctcccgcaataaggtcaaagtgacatcggcggcgtcctctggagatggttctgcgactatggggtcgaggtcccctgacggtggagctcctggtgtgaagggaaaggtggttgggctggcaatgcctgtctcccaatctgggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

385

Amino Acids

41.79

Weight (kDa)

10.09

Isoelectric Point (pI)

41.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 339
AarI CACCTGC 1 cut(s) 158
AasI GACNNNNNNGTC 2 cut(s) 46, 1075
Acc36I ACCTGC 1 cut(s) 158
Acc65I GGTACC 1 cut(s) 212
AccB1I GGYRCC 1 cut(s) 212
AccIII TCCGGA 1 cut(s) 177
AciI CCGC 3 cut(s) 713, 1018, 1043
AclI AACGTT 2 cut(s) 241, 690
AclWI GGATC 4 cut(s) 486, 530, 646, 757
AcuI CTGAAG 2 cut(s) 764, 882
AcyI GRCGYC 1 cut(s) 1046
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 4 cut(s) 214, 805, 877, 989
AfeI AGCGCT 1 cut(s) 489
AgeI ACCGGT 1 cut(s) 70
AgsI TTSAA 3 cut(s) 311, 730, 815
AjnI CCWGG 4 cut(s) 97, 646, 951, 1102
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AloI GAACNNNNNNTCC 4 cut(s) 420, 452, 648, 680
AluBI AGCT 5 cut(s) 370, 742, 848, 866, 1100
AluI AGCT 5 cut(s) 370, 742, 848, 866, 1100
Alw21I GWGCWC 1 cut(s) 1102
Alw26I GTCTC 3 cut(s) 626, 975, 1147
AlwI GGATC 4 cut(s) 486, 530, 646, 757
Ama87I CYCGRG 3 cut(s) 279, 507, 791
Aor13HI TCCGGA 1 cut(s) 177
Aor51HI AGCGCT 1 cut(s) 489
AoxI GGCC 5 cut(s) 606, 684, 856, 949, 1004
ApeKI GCWGC 5 cut(s) 5, 8, 490, 643, 715
AsiGI ACCGGT 1 cut(s) 70
AsiSI GCGATCGC 1 cut(s) 15
Asp700I GAANNNNTTC 1 cut(s) 243
Asp718I GGTACC 1 cut(s) 212
AspLEI GCGC 2 cut(s) 490, 546
AspS9I GGNCC 7 cut(s) 223, 296, 656, 684, 733, 857, 1083
AsuC2I CCSGG 3 cut(s) 414, 792, 793
AsuHPI GGTGA 4 cut(s) 248, 250, 403, 702
AvaI CYCGRG 3 cut(s) 279, 507, 791
AvaII GGWCC 5 cut(s) 223, 296, 656, 733, 1083
AxyI CCTNAGG 1 cut(s) 590
BanI GGYRCC 1 cut(s) 212
BanII GRGCYC 2 cut(s) 933, 1102
BauI CACGAG 1 cut(s) 1008
Bbv12I GWGCWC 1 cut(s) 1102
BbvCI CCTCAGC 1 cut(s) 849
BbvI GCAGC 4 cut(s) 20, 477, 655, 702
BccI CCATC 4 cut(s) 676, 848, 953, 1052
BciT130I CCWGG 4 cut(s) 99, 648, 953, 1104
BcnI CCSGG 3 cut(s) 414, 792, 793
BcoDI GTCTC 3 cut(s) 626, 975, 1147
BfaI CTAG 1 cut(s) 674
BfmI CTRYAG 3 cut(s) 6, 151, 360
BfoI RGCGCY 1 cut(s) 491
BfuAI ACCTGC 1 cut(s) 158
BglII AGATCT 1 cut(s) 354
BisI GCNGC 6 cut(s) 6, 9, 491, 644, 716, 1044
BlsI GCNGC 6 cut(s) 7, 10, 492, 645, 717, 1045
BmcAI AGTACT 1 cut(s) 805
Bme1390I CCNGG 7 cut(s) 99, 414, 648, 792, 793, 953, 1104
Bme18I GGWCC 5 cut(s) 223, 296, 656, 733, 1083
BmeT110I CYCGRG 3 cut(s) 279, 507, 791
BmgT120I GGNCC 7 cut(s) 223, 296, 656, 684, 733, 857, 1083
BmiI GGNNCC 7 cut(s) 96, 214, 657, 735, 932, 1015, 1085
BmrFI CCNGG 7 cut(s) 99, 414, 648, 792, 793, 953, 1104
BmsI GCATC 3 cut(s) 493, 610, 822
BpmI CTGGAG 5 cut(s) 491, 804, 896, 957, 1074
Bpu10I CCTNAGC 1 cut(s) 849
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 3 cut(s) 414, 792, 793
Bsa29I ATCGAT 1 cut(s) 194
BsaHI GRCGYC 1 cut(s) 1046
BsaI GGTCTC 1 cut(s) 975
BsaJI CCNNGG 5 cut(s) 98, 230, 299, 609, 791
BsaWI WCCGGW 4 cut(s) 70, 177, 438, 538
Bse118I RCCGGY 2 cut(s) 70, 947
Bse1I ACTGG 2 cut(s) 786, 821
Bse21I CCTNAGG 1 cut(s) 590
Bse3DI GCAATG 1 cut(s) 1140
BseAI TCCGGA 1 cut(s) 177
BseBI CCWGG 4 cut(s) 99, 648, 953, 1104
BseCI ATCGAT 1 cut(s) 194
BseDI CCNNGG 5 cut(s) 98, 230, 299, 609, 791
BseGI GGATG 4 cut(s) 277, 668, 837, 859
BseMI GCAATG 1 cut(s) 1140
BseMII CTCAG 3 cut(s) 103, 789, 840
BseNI ACTGG 2 cut(s) 786, 821
BseXI GCAGC 4 cut(s) 20, 477, 655, 702
BsgI GTGCAG 2 cut(s) 305, 779
Bsh1285I CGRYCG 2 cut(s) 15, 663
BshFI GGCC 5 cut(s) 608, 686, 858, 951, 1006
BshNI GGYRCC 1 cut(s) 212
BshTI ACCGGT 1 cut(s) 70
BshVI ATCGAT 1 cut(s) 194
BsiEI CGRYCG 2 cut(s) 15, 663
BsiHKAI GWGCWC 1 cut(s) 1102
BsiHKCI CYCGRG 3 cut(s) 279, 507, 791
BsiSI CCGG 9 cut(s) 71, 178, 413, 439, 514, 539, 792, 917, 948
BslFI GGGAC 6 cut(s) 466, 669, 719, 808, 825, 1069
BsmAI GTCTC 3 cut(s) 626, 975, 1147
BsmBI CGTCTC 1 cut(s) 626
BsmFI GGGAC 6 cut(s) 466, 669, 719, 808, 825, 1069
BsnI GGCC 5 cut(s) 608, 686, 858, 951, 1006
Bso31I GGTCTC 1 cut(s) 975
BsoBI CYCGRG 3 cut(s) 279, 507, 791
Bsp1286I GDGCHC 2 cut(s) 933, 1102
Bsp13I TCCGGA 1 cut(s) 177
Bsp1407I TGTACA 1 cut(s) 987
Bsp143I GATC 9 cut(s) 12, 191, 354, 478, 535, 550, 638, 660, 762
BspACI CCGC 3 cut(s) 713, 1018, 1043
BspANI GGCC 5 cut(s) 608, 686, 858, 951, 1006
BspCNI CTCAG 3 cut(s) 102, 790, 841
BspDI ATCGAT 1 cut(s) 194
BspEI TCCGGA 1 cut(s) 177
BspLI GGNNCC 7 cut(s) 96, 214, 657, 735, 932, 1015, 1085
BspMAI CTGCAG 3 cut(s) 10, 155, 364
BspMI ACCTGC 1 cut(s) 158
BspPI GGATC 4 cut(s) 486, 530, 646, 757
BspT107I GGYRCC 1 cut(s) 212
BspTNI GGTCTC 1 cut(s) 975
BsrDI GCAATG 1 cut(s) 1140
BsrFI RCCGGY 2 cut(s) 70, 947
BsrGI TGTACA 1 cut(s) 987
BsrI ACTGG 2 cut(s) 786, 821
BssAI RCCGGY 2 cut(s) 70, 947
BssECI CCNNGG 5 cut(s) 98, 230, 299, 609, 791
BssMI GATC 9 cut(s) 12, 191, 354, 478, 535, 550, 638, 660, 762
BssNI GRCGYC 1 cut(s) 1046
BssSI CACGAG 1 cut(s) 1008
BssT1I CCWWGG 1 cut(s) 609
Bst2BI CACGAG 1 cut(s) 1008
Bst2UI CCWGG 4 cut(s) 99, 648, 953, 1104
Bst4CI ACNGT 4 cut(s) 217, 436, 887, 1094
Bst6I CTCTTC 2 cut(s) 624, 740
BstACI GRCGYC 1 cut(s) 1046
BstAUI TGTACA 1 cut(s) 987
BstC8I GCNNGC 2 cut(s) 1004, 1131
BstDEI CTNAG 4 cut(s) 89, 590, 798, 849
BstDSI CCRYGG 2 cut(s) 230, 299
BstF5I GGATG 4 cut(s) 277, 668, 837, 859
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 2 cut(s) 490, 546
BstKTI GATC 9 cut(s) 15, 194, 357, 481, 538, 553, 641, 663, 765
BstMAI GTCTC 3 cut(s) 626, 975, 1147
BstMBI GATC 9 cut(s) 12, 191, 354, 478, 535, 550, 638, 660, 762
BstMCI CGRYCG 2 cut(s) 15, 663
BstMWI GCNNNNNNNGC 3 cut(s) 14, 35, 1135
BstNI CCWGG 4 cut(s) 99, 648, 953, 1104
BstSCI CCNGG 7 cut(s) 97, 412, 646, 790, 791, 951, 1102
BstSFI CTRYAG 3 cut(s) 6, 151, 360
BstV1I GCAGC 4 cut(s) 20, 477, 655, 702
BstX2I RGATCY 2 cut(s) 354, 762
BstYI RGATCY 2 cut(s) 354, 762
Bsu15I ATCGAT 1 cut(s) 194
Bsu36I CCTNAGG 1 cut(s) 590
BsuRI GGCC 5 cut(s) 608, 686, 858, 951, 1006
BsuTUI ATCGAT 1 cut(s) 194
BtgI CCRYGG 2 cut(s) 230, 299
BtsCI GGATG 4 cut(s) 277, 668, 837, 859
BtsI GCAGTG 1 cut(s) 369
BtsIMutI CAGTG 3 cut(s) 369, 779, 828
BveI ACCTGC 1 cut(s) 158
Cac8I GCNNGC 2 cut(s) 1004, 1131
CfoI GCGC 2 cut(s) 490, 546
Cfr10I RCCGGY 2 cut(s) 70, 947
Cfr13I GGNCC 7 cut(s) 223, 296, 656, 684, 733, 857, 1083
Cfr9I CCCGGG 1 cut(s) 791
ClaI ATCGAT 1 cut(s) 194
CseI GACGC 2 cut(s) 824, 1035
Csp6I GTAC 4 cut(s) 213, 804, 876, 988
CspAI ACCGGT 1 cut(s) 70
CviAII CATG 4 cut(s) 22, 263, 319, 533
CviQI GTAC 4 cut(s) 213, 804, 876, 988
DdeI CTNAG 4 cut(s) 89, 590, 798, 849
DpnI GATC 9 cut(s) 14, 193, 356, 480, 537, 552, 640, 662, 764
DpnII GATC 9 cut(s) 12, 191, 354, 478, 535, 550, 638, 660, 762
DraIII CACNNNGTG 1 cut(s) 236
DrdI GACNNNNNNGTC 2 cut(s) 46, 1075
DseDI GACNNNNNNGTC 2 cut(s) 46, 1075
Eam1104I CTCTTC 2 cut(s) 624, 740
EarI CTCTTC 2 cut(s) 624, 740
Ecl136II GAGCTC 1 cut(s) 1100
Eco130I CCWWGG 1 cut(s) 609
Eco147I AGGCCT 2 cut(s) 608, 1006
Eco24I GRGCYC 2 cut(s) 933, 1102
Eco31I GGTCTC 1 cut(s) 975
Eco47I GGWCC 5 cut(s) 223, 296, 656, 733, 1083
Eco47III AGCGCT 1 cut(s) 489
Eco53kI GAGCTC 1 cut(s) 1100
Eco57I CTGAAG 2 cut(s) 764, 882
Eco81I CCTNAGG 1 cut(s) 590
Eco88I CYCGRG 3 cut(s) 279, 507, 791
EcoICRI GAGCTC 1 cut(s) 1100
EcoO109I RGGNCCY 2 cut(s) 733, 1083
EcoRII CCWGG 4 cut(s) 97, 646, 951, 1102
EcoT14I CCWWGG 1 cut(s) 609
EcoT38I GRGCYC 2 cut(s) 933, 1102
ErhI CCWWGG 1 cut(s) 609
Esp3I CGTCTC 1 cut(s) 626
FaeI CATG 4 cut(s) 25, 266, 322, 536
FaiI YATR 8 cut(s) 23, 264, 320, 339, 407, 485, 534, 1073
FaqI GGGAC 6 cut(s) 466, 669, 719, 808, 825, 1069
FatI CATG 4 cut(s) 21, 262, 318, 532
FauI CCCGC 1 cut(s) 1025
Fnu4HI GCNGC 6 cut(s) 6, 9, 491, 644, 716, 1044
FokI GGATG 4 cut(s) 284, 655, 844, 866
FriOI GRGCYC 2 cut(s) 933, 1102
Fsp4HI GCNGC 6 cut(s) 6, 9, 491, 644, 716, 1044
FspBI CTAG 1 cut(s) 674
GlaI GCGC 2 cut(s) 489, 545
GluI GCNGC 6 cut(s) 6, 9, 491, 644, 716, 1044
GsuI CTGGAG 5 cut(s) 491, 804, 896, 957, 1074
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 5 cut(s) 608, 686, 858, 951, 1006
HapII CCGG 9 cut(s) 71, 178, 413, 439, 514, 539, 792, 917, 948
HgaI GACGC 2 cut(s) 824, 1035
HhaI GCGC 2 cut(s) 490, 546
Hin1I GRCGYC 1 cut(s) 1046
Hin1II CATG 4 cut(s) 25, 266, 322, 536
Hin6I GCGC 2 cut(s) 488, 544
HinP1I GCGC 2 cut(s) 488, 544
HinfI GANTC 7 cut(s) 85, 139, 170, 322, 510, 785, 811
HpaII CCGG 9 cut(s) 71, 178, 413, 439, 514, 539, 792, 917, 948
HphI GGTGA 4 cut(s) 248, 250, 403, 702
Hpy166II GTNNAC 7 cut(s) 76, 239, 252, 258, 770, 876, 988
Hpy188I TCNGA 2 cut(s) 352, 943
Hpy188III TCNNGA 3 cut(s) 178, 328, 1053
Hpy8I GTNNAC 7 cut(s) 76, 239, 252, 258, 770, 876, 988
Hpy99I CGWCG 2 cut(s) 558, 840
HpyAV CCTTC 9 cut(s) 97, 214, 283, 395, 736, 745, 976, 991, 1105
HpyCH4III ACNGT 4 cut(s) 217, 436, 887, 1094
HpyCH4IV ACGT 5 cut(s) 241, 254, 313, 395, 690
HpyCH4V TGCA 5 cut(s) 8, 153, 286, 362, 760
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 35, 1135
HpyF3I CTNAG 4 cut(s) 89, 590, 798, 849
HpySE526I ACGT 5 cut(s) 241, 254, 313, 395, 690
Hsp92I GRCGYC 1 cut(s) 1046
Hsp92II CATG 4 cut(s) 25, 266, 322, 536
HspAI GCGC 2 cut(s) 488, 544
Kpn2I TCCGGA 1 cut(s) 177
KpnI GGTACC 1 cut(s) 216
Kzo9I GATC 9 cut(s) 12, 191, 354, 478, 535, 550, 638, 660, 762
LmnI GCTCC 4 cut(s) 936, 1019, 1097, 1105
Lsp1109I GCAGC 4 cut(s) 20, 477, 655, 702
LweI GCATC 3 cut(s) 493, 610, 822
MaeI CTAG 1 cut(s) 674
MaeII ACGT 5 cut(s) 241, 254, 313, 395, 690
MaeIII GTNAC 2 cut(s) 391, 1033
MalI GATC 9 cut(s) 14, 193, 356, 480, 537, 552, 640, 662, 764
MboI GATC 9 cut(s) 12, 191, 354, 478, 535, 550, 638, 660, 762
MboII GAAGA 6 cut(s) 77, 641, 699, 714, 757, 1006
MflI RGATCY 2 cut(s) 354, 762
MhlI GDGCHC 2 cut(s) 933, 1102
MlyI GAGTC 3 cut(s) 148, 519, 779
MmeI TCCRAC 2 cut(s) 250, 378
MroI TCCGGA 1 cut(s) 177
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 1 cut(s) 144
MspA1I CMGCKG 1 cut(s) 715
MspI CCGG 9 cut(s) 71, 178, 413, 439, 514, 539, 792, 917, 948
MspR9I CCNGG 7 cut(s) 99, 414, 648, 792, 793, 953, 1104
MvaI CCWGG 4 cut(s) 99, 648, 953, 1104
MwoI GCNNNNNNNGC 3 cut(s) 14, 35, 1135
NciI CCSGG 3 cut(s) 414, 792, 793
NdeII GATC 9 cut(s) 12, 191, 354, 478, 535, 550, 638, 660, 762
NlaIII CATG 4 cut(s) 25, 266, 322, 536
NlaIV GGNNCC 7 cut(s) 96, 214, 657, 735, 932, 1015, 1085
NmuCI GTSAC 2 cut(s) 391, 1033
PaeR7I CTCGAG 2 cut(s) 279, 507
PaqCI CACCTGC 1 cut(s) 158
PceI AGGCCT 2 cut(s) 608, 1006
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 4 cut(s) 85, 170, 322, 811
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 6 cut(s) 7, 10, 492, 645, 717, 1045
Ple19I CGATCG 2 cut(s) 15, 663
PleI GAGTC 3 cut(s) 147, 518, 779
PpsI GAGTC 3 cut(s) 147, 518, 779
PpuMI RGGWCCY 2 cut(s) 733, 1083
PsiI TTATAA 1 cut(s) 339
Psp124BI GAGCTC 1 cut(s) 1102
Psp1406I AACGTT 2 cut(s) 241, 690
Psp5II RGGWCCY 2 cut(s) 733, 1083
Psp6I CCWGG 4 cut(s) 97, 646, 951, 1102
PspGI CCWGG 4 cut(s) 97, 646, 951, 1102
PspN4I GGNNCC 7 cut(s) 96, 214, 657, 735, 932, 1015, 1085
PspPI GGNCC 7 cut(s) 223, 296, 656, 684, 733, 857, 1083
PspPPI RGGWCCY 2 cut(s) 733, 1083
PspXI VCTCGAGB 2 cut(s) 279, 507
PstI CTGCAG 3 cut(s) 10, 155, 364
PsuI RGATCY 2 cut(s) 354, 762
PvuI CGATCG 2 cut(s) 15, 663
RgaI GCGATCGC 1 cut(s) 15
RsaI GTAC 4 cut(s) 214, 805, 877, 989
RsaNI GTAC 4 cut(s) 213, 804, 876, 988
SacI GAGCTC 1 cut(s) 1102
SaqAI TTAA 1 cut(s) 144
SatI GCNGC 6 cut(s) 6, 9, 491, 644, 716, 1044
Sau3AI GATC 9 cut(s) 12, 191, 354, 478, 535, 550, 638, 660, 762
Sau96I GGNCC 7 cut(s) 223, 296, 656, 684, 733, 857, 1083
SbfI CCTGCAGG 1 cut(s) 155
ScaI AGTACT 1 cut(s) 805
SchI GAGTC 3 cut(s) 148, 519, 779
ScrFI CCNGG 7 cut(s) 99, 414, 648, 792, 793, 953, 1104
SdaI CCTGCAGG 1 cut(s) 155
SduI GDGCHC 2 cut(s) 933, 1102
SfaAI GCGATCGC 1 cut(s) 15
SfaNI GCATC 3 cut(s) 493, 610, 822
SfcI CTRYAG 3 cut(s) 6, 151, 360
Sfr274I CTCGAG 2 cut(s) 279, 507
SgfI GCGATCGC 1 cut(s) 15
SinI GGWCC 5 cut(s) 223, 296, 656, 733, 1083
SlaI CTCGAG 2 cut(s) 279, 507
SmaI CCCGGG 1 cut(s) 793
SmlI CTYRAG 3 cut(s) 53, 279, 507
SmoI CTYRAG 3 cut(s) 53, 279, 507
Sse8387I CCTGCAGG 1 cut(s) 155
SseBI AGGCCT 2 cut(s) 608, 1006
SsiI CCGC 3 cut(s) 713, 1018, 1043
SspMI CTAG 1 cut(s) 674
SstI GAGCTC 1 cut(s) 1102
StuI AGGCCT 2 cut(s) 608, 1006
StyD4I CCNGG 7 cut(s) 97, 412, 646, 790, 791, 951, 1102
StyI CCWWGG 1 cut(s) 609
TaaI ACNGT 4 cut(s) 217, 436, 887, 1094
TaiI ACGT 5 cut(s) 244, 257, 316, 398, 693
TaqI TCGA 6 cut(s) 118, 194, 280, 508, 809, 1079
TaqII GACCGA 1 cut(s) 673
TatI WGTACW 2 cut(s) 803, 987
TauI GCSGC 1 cut(s) 1046
TfiI GAWTC 4 cut(s) 85, 170, 322, 811
Tru1I TTAA 1 cut(s) 144
Tru9I TTAA 1 cut(s) 144
TscAI CASTG 3 cut(s) 369, 786, 828
TseFI GTSAC 2 cut(s) 391, 1033
TseI GCWGC 5 cut(s) 5, 8, 490, 643, 715
Tsp45I GTSAC 2 cut(s) 391, 1033
TspDTI ATGAA 2 cut(s) 162, 279
TspGWI ACGGA 3 cut(s) 75, 288, 755
TspMI CCCGGG 1 cut(s) 791
TspRI CASTG 3 cut(s) 369, 786, 828
VpaK11BI GGWCC 5 cut(s) 223, 296, 656, 733, 1083
XcmI CCANNNNNNNNNTGG 1 cut(s) 886
XhoI CTCGAG 2 cut(s) 279, 507
XmaI CCCGGG 1 cut(s) 791
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 1 cut(s) 674
ZrmI AGTACT 1 cut(s) 805
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.