MD08G1230600.v1.1

54S ribosomal protein L51

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0000172
Physical Location & Seq
Forward (+)
29614856 .. 29617687
2832 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1230600.v1.1.491

Sequence Viewer

Length: 636 bp
ATGTTGTTAACTGGTCTAGTACCGCTTAAAGGCCCACAACCAGGAAGCCCATCGTTTCAATTAAGTACGCAGCCCACGCCACACAACTCTTCCTCCTACAACTCCCTCTCTCGCTCGCTTTCTGTCTATTTTCTCTCTCTGTTTGCTGCGCCGCCGCCACCGGTCCACCACCACCCCAAAGCACGGGTCGACGCCATCTCCGCCTCCACATTCTCACCTCTTCCTACTTCCTCTCTCATTATCGACGCCGTATACAAGCTTCACTGTAACAGAGCTTCGAGAAAAAGAGGAGTGTGGCAATTGCAAAAACTAGTTGTGAGCTATTCTGATTGGGGAGGAAGCAGTAGGGGCATCAGATCATTTATGGAGACATATCTACCGACATTTAAGGAGAAGAATCCTCAGCTAGAGGTGATTACTGAACTCATCCGCGGTCAGCATCCACATCTGAAGGGCTTATACAAGAACAAGACTGAAAAGGTGGTATGTGTGAAAAACATGGATTCAGAAGAGGTTCTTCAATATGCAAACAGGCTAAGAAACCAACTGGGGAGAAAAGTGGTGAAGCTGAAGACTAGACATGTAACCAAACATCCCAGCGTGCAAGGTACCTGGACAACAGACGTAAAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
L51_S25_CI-B8

Protein Analysis

212

Amino Acids

23.73

Weight (kDa)

10.14

Isoelectric Point (pI)

41.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
L51_S25_CI-B8 PF05047 118 - 168 7.2e-13 Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 608
AccB1I GGYRCC 1 cut(s) 608
AccI GTMKAC 2 cut(s) 189, 252
AccII CGCG 1 cut(s) 432
AciI CCGC 6 cut(s) 23, 152, 155, 201, 430, 432
AcuI CTGAAG 2 cut(s) 470, 590
AcyI GRCGYC 2 cut(s) 192, 246
AfaI GTAC 3 cut(s) 21, 67, 610
AfiI CCNNNNNNNGG 3 cut(s) 29, 41, 183
AflIII ACRYGT 1 cut(s) 580
AgeI ACCGGT 1 cut(s) 160
AgsI TTSAA 2 cut(s) 59, 521
AhlI ACTAGT 1 cut(s) 310
AjnI CCWGG 2 cut(s) 40, 611
AluBI AGCT 5 cut(s) 259, 275, 321, 406, 568
AluI AGCT 5 cut(s) 259, 275, 321, 406, 568
Alw26I GTCTC 1 cut(s) 362
AoxI GGCC 1 cut(s) 31
ApeKI GCWGC 2 cut(s) 70, 146
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AsiGI ACCGGT 1 cut(s) 160
Asp700I GAANNNNTTC 1 cut(s) 513
Asp718I GGTACC 1 cut(s) 608
AspLEI GCGC 1 cut(s) 151
AspS9I GGNCC 2 cut(s) 32, 163
AsuHPI GGTGA 3 cut(s) 207, 424, 574
AvaII GGWCC 1 cut(s) 163
BanI GGYRCC 1 cut(s) 608
BarI GAAGNNNNNNTAC 6 cut(s) 243, 259, 275, 291, 443, 475
BbsI GAAGAC 1 cut(s) 578
BbvCI CCTCAGC 1 cut(s) 402
BbvI GCAGC 2 cut(s) 82, 133
BccI CCATC 2 cut(s) 58, 203
BceAI ACGGC 1 cut(s) 233
BciT130I CCWGG 2 cut(s) 42, 613
BcoDI GTCTC 1 cut(s) 362
BcuI ACTAGT 1 cut(s) 310
BfaI CTAG 4 cut(s) 17, 311, 407, 576
BisI GCNGC 4 cut(s) 71, 147, 152, 155
BlsI GCNGC 4 cut(s) 72, 148, 153, 156
Bme1390I CCNGG 2 cut(s) 42, 613
Bme18I GGWCC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 32, 163
BmiI GGNNCC 1 cut(s) 610
BmrFI CCNGG 2 cut(s) 42, 613
BmrI ACTGGG 1 cut(s) 557
BmsI GCATC 2 cut(s) 360, 448
BmuI ACTGGG 1 cut(s) 557
BpiI GAAGAC 1 cut(s) 578
Bpu10I CCTNAGC 1 cut(s) 402
BsaHI GRCGYC 2 cut(s) 192, 246
BsaJI CCNNGG 1 cut(s) 430
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 4 cut(s) 77, 107, 182, 212
Bsc4I CCNNNNNNNGG 3 cut(s) 29, 41, 183
Bse118I RCCGGY 1 cut(s) 160
Bse1I ACTGG 2 cut(s) 16, 552
BseBI CCWGG 2 cut(s) 42, 613
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 3 cut(s) 426, 439, 592
BseLI CCNNNNNNNGG 3 cut(s) 29, 41, 183
BseMII CTCAG 1 cut(s) 416
BseNI ACTGG 2 cut(s) 16, 552
BseRI GAGGAG 1 cut(s) 303
BseXI GCAGC 2 cut(s) 82, 133
BseYI CCCAGC 1 cut(s) 596
Bsh1236I CGCG 1 cut(s) 432
BshFI GGCC 1 cut(s) 33
BshNI GGYRCC 1 cut(s) 608
BshTI ACCGGT 1 cut(s) 160
BsiSI CCGG 1 cut(s) 161
BslI CCNNNNNNNGG 3 cut(s) 29, 41, 183
BsmAI GTCTC 1 cut(s) 362
BsnI GGCC 1 cut(s) 33
Bsp143I GATC 1 cut(s) 356
BspACI CCGC 6 cut(s) 23, 152, 155, 201, 430, 432
BspANI GGCC 1 cut(s) 33
BspCNI CTCAG 1 cut(s) 415
BspFNI CGCG 1 cut(s) 432
BspLI GGNNCC 1 cut(s) 610
BspT107I GGYRCC 1 cut(s) 608
BsrFI RCCGGY 1 cut(s) 160
BsrI ACTGG 2 cut(s) 16, 552
BssAI RCCGGY 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 1 cut(s) 356
BssNAI GTATAC 1 cut(s) 253
BssNI GRCGYC 2 cut(s) 192, 246
Bst1107I GTATAC 1 cut(s) 253
Bst2UI CCWGG 2 cut(s) 42, 613
Bst4CI ACNGT 1 cut(s) 266
Bst6I CTCTTC 3 cut(s) 94, 225, 504
BstACI GRCGYC 2 cut(s) 192, 246
BstC8I GCNNGC 2 cut(s) 116, 602
BstDEI CTNAG 2 cut(s) 402, 536
BstDSI CCRYGG 1 cut(s) 430
BstF5I GGATG 3 cut(s) 426, 439, 592
BstFNI CGCG 1 cut(s) 432
BstHHI GCGC 1 cut(s) 151
BstKTI GATC 1 cut(s) 359
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 1 cut(s) 356
BstMWI GCNNNNNNNGC 3 cut(s) 76, 200, 348
BstNI CCWGG 2 cut(s) 42, 613
BstNSI RCATGY 1 cut(s) 584
BstSCI CCNGG 2 cut(s) 40, 611
BstUI CGCG 1 cut(s) 432
BstV1I GCAGC 2 cut(s) 82, 133
BstV2I GAAGAC 1 cut(s) 578
BstZ17I GTATAC 1 cut(s) 253
BsuRI GGCC 1 cut(s) 33
BtgI CCRYGG 1 cut(s) 430
BtsCI GGATG 3 cut(s) 426, 439, 592
BtsIMutI CAGTG 1 cut(s) 262
Cac8I GCNNGC 2 cut(s) 116, 602
CfoI GCGC 1 cut(s) 151
Cfr10I RCCGGY 1 cut(s) 160
Cfr13I GGNCC 2 cut(s) 32, 163
Cfr42I CCGCGG 1 cut(s) 433
CseI GACGC 2 cut(s) 200, 254
Csp6I GTAC 3 cut(s) 20, 66, 609
CspAI ACCGGT 1 cut(s) 160
CviAII CATG 2 cut(s) 499, 581
CviQI GTAC 3 cut(s) 20, 66, 609
DdeI CTNAG 2 cut(s) 402, 536
DpnI GATC 1 cut(s) 358
DpnII GATC 1 cut(s) 356
Eam1104I CTCTTC 3 cut(s) 94, 225, 504
EarI CTCTTC 3 cut(s) 94, 225, 504
EciI GGCGGA 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 163
Eco57I CTGAAG 2 cut(s) 470, 590
EcoRII CCWGG 2 cut(s) 40, 611
FaeI CATG 2 cut(s) 502, 584
FaiI YATR 8 cut(s) 253, 365, 373, 460, 487, 500, 525, 582
FalI AAGNNNNNCTT 2 cut(s) 501, 533
FatI CATG 2 cut(s) 498, 580
FblI GTMKAC 2 cut(s) 189, 252
Fnu4HI GCNGC 4 cut(s) 71, 147, 152, 155
FokI GGATG 3 cut(s) 413, 426, 579
Fsp4HI GCNGC 4 cut(s) 71, 147, 152, 155
FspBI CTAG 4 cut(s) 17, 311, 407, 576
GlaI GCGC 1 cut(s) 150
GluI GCNGC 4 cut(s) 71, 147, 152, 155
GsaI CCCAGC 1 cut(s) 600
HaeIII GGCC 1 cut(s) 33
HapII CCGG 1 cut(s) 161
HgaI GACGC 2 cut(s) 200, 254
HhaI GCGC 1 cut(s) 151
Hin1I GRCGYC 2 cut(s) 192, 246
Hin1II CATG 2 cut(s) 502, 584
Hin6I GCGC 1 cut(s) 149
HinP1I GCGC 1 cut(s) 149
HincII GTYRAC 2 cut(s) 9, 190
HindII GTYRAC 2 cut(s) 9, 190
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 2 cut(s) 397, 503
HpaI GTTAAC 1 cut(s) 9
HpaII CCGG 1 cut(s) 161
HphI GGTGA 3 cut(s) 207, 424, 574
Hpy166II GTNNAC 4 cut(s) 9, 166, 190, 253
Hpy188I TCNGA 4 cut(s) 328, 356, 450, 508
Hpy188III TCNNGA 1 cut(s) 279
Hpy8I GTNNAC 4 cut(s) 9, 166, 190, 253
Hpy99I CGWCG 2 cut(s) 194, 248
HpyAV CCTTC 1 cut(s) 445
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 3 cut(s) 304, 527, 604
HpyF10VI GCNNNNNNNGC 3 cut(s) 76, 200, 348
HpyF3I CTNAG 2 cut(s) 402, 536
HpySE526I ACGT 1 cut(s) 624
Hsp92I GRCGYC 2 cut(s) 192, 246
Hsp92II CATG 2 cut(s) 502, 584
HspAI GCGC 1 cut(s) 149
KpnI GGTACC 1 cut(s) 612
KspAI GTTAAC 1 cut(s) 9
KspI CCGCGG 1 cut(s) 433
Kzo9I GATC 1 cut(s) 356
LpnPI CCDG 8 cut(s) 27, 54, 174, 517, 533, 598, 610, 625
Lsp1109I GCAGC 2 cut(s) 82, 133
LweI GCATC 2 cut(s) 360, 448
MaeI CTAG 4 cut(s) 17, 311, 407, 576
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 2 cut(s) 266, 583
MalI GATC 1 cut(s) 358
MboI GATC 1 cut(s) 356
MboII GAAGA 6 cut(s) 81, 212, 406, 509, 521, 583
MfeI CAATTG 1 cut(s) 299
MluCI AATT 2 cut(s) 59, 299
MroXI GAANNNNTTC 1 cut(s) 513
MseI TTAA 4 cut(s) 8, 27, 62, 387
MspA1I CMGCKG 1 cut(s) 432
MspI CCGG 1 cut(s) 161
MspR9I CCNGG 2 cut(s) 42, 613
MunI CAATTG 1 cut(s) 299
MvaI CCWGG 2 cut(s) 42, 613
MvnI CGCG 1 cut(s) 432
MwoI GCNNNNNNNGC 3 cut(s) 76, 200, 348
NdeII GATC 1 cut(s) 356
NlaIII CATG 2 cut(s) 502, 584
NlaIV GGNNCC 1 cut(s) 610
NspI RCATGY 1 cut(s) 584
PciI ACATGT 1 cut(s) 580
PdmI GAANNNNTTC 1 cut(s) 513
PfeI GAWTC 2 cut(s) 397, 503
PinAI ACCGGT 1 cut(s) 160
PkrI GCNGC 4 cut(s) 72, 148, 153, 156
PscI ACATGT 1 cut(s) 580
Psp6I CCWGG 2 cut(s) 40, 611
PspFI CCCAGC 1 cut(s) 596
PspGI CCWGG 2 cut(s) 40, 611
PspN4I GGNNCC 1 cut(s) 610
PspPI GGNCC 2 cut(s) 32, 163
RsaI GTAC 3 cut(s) 21, 67, 610
RsaNI GTAC 3 cut(s) 20, 66, 609
SacII CCGCGG 1 cut(s) 433
SalI GTCGAC 1 cut(s) 188
SaqAI TTAA 4 cut(s) 8, 27, 62, 387
SatI GCNGC 4 cut(s) 71, 147, 152, 155
Sau3AI GATC 1 cut(s) 356
Sau96I GGNCC 2 cut(s) 32, 163
ScrFI CCNGG 2 cut(s) 42, 613
SfaNI GCATC 2 cut(s) 360, 448
Sfr303I CCGCGG 1 cut(s) 433
SgrBI CCGCGG 1 cut(s) 433
SinI GGWCC 1 cut(s) 163
SpeI ACTAGT 1 cut(s) 310
Sse9I AATT 2 cut(s) 59, 299
SsiI CCGC 6 cut(s) 23, 152, 155, 201, 430, 432
SspMI CTAG 4 cut(s) 17, 311, 407, 576
StyD4I CCNGG 2 cut(s) 40, 611
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 1 cut(s) 627
TaqI TCGA 3 cut(s) 189, 243, 278
TasI AATT 2 cut(s) 59, 299
TauI GCSGC 2 cut(s) 154, 157
TfiI GAWTC 2 cut(s) 397, 503
Tru1I TTAA 4 cut(s) 8, 27, 62, 387
Tru9I TTAA 4 cut(s) 8, 27, 62, 387
TscAI CASTG 1 cut(s) 269
TseI GCWGC 2 cut(s) 70, 146
TspRI CASTG 1 cut(s) 269
VpaK11BI GGWCC 1 cut(s) 163
XceI RCATGY 1 cut(s) 584
XmiI GTMKAC 2 cut(s) 189, 252
XmnI GAANNNNTTC 1 cut(s) 513
XspI CTAG 4 cut(s) 17, 311, 407, 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.