Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

31468190 .. 31468687

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G025180.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGCTGCTGCTATTGCTTCCATAACTGCTAGGCTAGCGACCAAATTATCACTCAGGGAGGGTGAAGAACCTGTGGATTTGGGGAAGGAGTTCCTCGCTCGTCACTTTTACTTGGTGGGGAAACTTAATACCTGTAGGGCGGTGGTTTTGGACTCTTTCCGGAGTGCGGTGCAATCTATGTGGCGATTGACAGGGATTGTGGAGGTCCAGCCACGGGGTGATCGATTTCTGTTTAAGTTCAACCACGAACGTGATGTCGCTCGTGTGAAGAAGGGAGGTCTGTGGGGCTTCCAACGTGCCATGATCTTGTTGAATGATTATGATGGCTTCTCAGAGATCCCTGCTGTGCAGCTTGATTTTGTTTGGATATGGGTTGCGCTTCAAGGTATTCCACCAGGTATCTTGACGGAACCCACAGTCCGGCTGGTGGGAGGAACGATTGGAGAAGTGTTGGAGGTGGACCGTGTGGCTCTGCGTCGCGGAGAAGCTCGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

165

Amino Acids

18.46

Weight (kDa)

9.29

Isoelectric Point (pI)

30.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	37 - 108	1.5e-06	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	480
AccIII	TCCGGA	1 cut(s)	159
AciI	CCGC	3 cut(s)	140, 167, 480
AclWI	GGATC	1 cut(s)	331
AdeI	CACNNNGTG	1 cut(s)	218
AfiI	CCNNNNNNNGG	4 cut(s)	166, 214, 420, 427
AgsI	TTSAA	3 cut(s)	241, 313, 383
AjnI	CCWGG	1 cut(s)	394
AleI	CACNNNNGTG	1 cut(s)	249
AloI	GAACNNNNNNTCC	2 cut(s)	402, 434
AluBI	AGCT	2 cut(s)	352, 488
AluI	AGCT	2 cut(s)	352, 488
AlwI	GGATC	1 cut(s)	331
Ama87I	CYCGRG	1 cut(s)	489
Aor13HI	TCCGGA	1 cut(s)	159
ApeKI	GCWGC	3 cut(s)	5, 8, 349
ArsI	GACNNNNNNTTYG	2 cut(s)	240, 272
Asp700I	GAANNNNTTC	1 cut(s)	89
AspLEI	GCGC	1 cut(s)	379
AspS9I	GGNCC	2 cut(s)	205, 460
AsuHPI	GGTGA	2 cut(s)	74, 230
AsuNHI	GCTAGC	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	2 cut(s)	205, 460
BauI	CACGAG	1 cut(s)	261
BbvI	GCAGC	1 cut(s)	361
BccI	CCATC	1 cut(s)	317
BciT130I	CCWGG	1 cut(s)	396
BfaI	CTAG	2 cut(s)	30, 35
BfmI	CTRYAG	1 cut(s)	133
BisI	GCNGC	3 cut(s)	6, 9, 350
BlsI	GCNGC	3 cut(s)	7, 10, 351
Bme1390I	CCNGG	1 cut(s)	396
Bme18I	GGWCC	2 cut(s)	205, 460
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	2 cut(s)	205, 460
BmiI	GGNNCC	1 cut(s)	411
BmrFI	CCNGG	1 cut(s)	396
BmtI	GCTAGC	1 cut(s)	38
Bsa29I	ATCGAT	1 cut(s)	223
BsaJI	CCNNGG	1 cut(s)	212
BsaWI	WCCGGW	1 cut(s)	159
Bsc4I	CCNNNNNNNGG	4 cut(s)	166, 214, 420, 427
BseAI	TCCGGA	1 cut(s)	159
BseBI	CCWGG	1 cut(s)	396
BseCI	ATCGAT	1 cut(s)	223
BseDI	CCNNGG	1 cut(s)	212
BseLI	CCNNNNNNNGG	4 cut(s)	166, 214, 420, 427
BseMII	CTCAG	2 cut(s)	67, 345
BseXI	GCAGC	1 cut(s)	361
BsgI	GTGCAG	1 cut(s)	368
Bsh1236I	CGCG	1 cut(s)	480
BshVI	ATCGAT	1 cut(s)	223
BsiHKCI	CYCGRG	1 cut(s)	489
BsiSI	CCGG	2 cut(s)	160, 421
BslI	CCNNNNNNNGG	4 cut(s)	166, 214, 420, 427
BsoBI	CYCGRG	1 cut(s)	489
Bsp13I	TCCGGA	1 cut(s)	159
Bsp143I	GATC	3 cut(s)	220, 303, 336
BspACI	CCGC	3 cut(s)	140, 167, 480
BspCNI	CTCAG	2 cut(s)	66, 344
BspDI	ATCGAT	1 cut(s)	223
BspEI	TCCGGA	1 cut(s)	159
BspFNI	CGCG	1 cut(s)	480
BspLI	GGNNCC	1 cut(s)	411
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	1 cut(s)	331
BssECI	CCNNGG	1 cut(s)	212
BssMI	GATC	3 cut(s)	220, 303, 336
BssSI	CACGAG	1 cut(s)	261
Bst2BI	CACGAG	1 cut(s)	261
Bst2UI	CCWGG	1 cut(s)	396
Bst4CI	ACNGT	2 cut(s)	418, 464
BstC8I	GCNNGC	1 cut(s)	36
BstDEI	CTNAG	2 cut(s)	53, 331
BstDSI	CCRYGG	1 cut(s)	212
BstFNI	CGCG	1 cut(s)	480
BstHHI	GCGC	1 cut(s)	379
BstKTI	GATC	3 cut(s)	223, 306, 339
BstMBI	GATC	3 cut(s)	220, 303, 336
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 35
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	1 cut(s)	394
BstSFI	CTRYAG	1 cut(s)	133
BstUI	CGCG	1 cut(s)	480
BstV1I	GCAGC	1 cut(s)	361
BstX2I	RGATCY	1 cut(s)	336
BstYI	RGATCY	1 cut(s)	336
Bsu15I	ATCGAT	1 cut(s)	223
BsuTUI	ATCGAT	1 cut(s)	223
BtgI	CCRYGG	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	36
CfoI	GCGC	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	205, 460
ClaI	ATCGAT	1 cut(s)	223
CseI	GACGC	1 cut(s)	464
CsiI	ACCWGGT	1 cut(s)	394
CspCI	CAANNNNNGTGG	2 cut(s)	161, 196
CviAII	CATG	1 cut(s)	301
CviJI	RGCY	9 cut(s)	5, 34, 211, 288, 327, 352, 424, 470, 488
CviKI_1	RGCY	9 cut(s)	5, 34, 211, 288, 327, 352, 424, 470, 488
DdeI	CTNAG	2 cut(s)	53, 331
DpnI	GATC	3 cut(s)	222, 305, 338
DpnII	GATC	3 cut(s)	220, 303, 336
DraIII	CACNNNGTG	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	205, 460
Eco88I	CYCGRG	1 cut(s)	489
EcoRII	CCWGG	1 cut(s)	394
FaeI	CATG	1 cut(s)	304
FaiI	YATR	5 cut(s)	23, 179, 302, 321, 370
FatI	CATG	1 cut(s)	300
Fnu4HI	GCNGC	3 cut(s)	6, 9, 350
Fsp4HI	GCNGC	3 cut(s)	6, 9, 350
FspBI	CTAG	2 cut(s)	30, 35
GlaI	GCGC	1 cut(s)	378
GluI	GCNGC	3 cut(s)	6, 9, 350
HapII	CCGG	2 cut(s)	160, 421
HgaI	GACGC	1 cut(s)	464
HhaI	GCGC	1 cut(s)	379
Hin1II	CATG	1 cut(s)	304
Hin6I	GCGC	1 cut(s)	377
HinP1I	GCGC	1 cut(s)	377
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	2 cut(s)	160, 421
HphI	GGTGA	2 cut(s)	74, 230
Hpy166II	GTNNAC	1 cut(s)	460
Hpy188I	TCNGA	1 cut(s)	334
Hpy188III	TCNNGA	2 cut(s)	160, 403
Hpy8I	GTNNAC	1 cut(s)	460
Hpy99I	CGWCG	1 cut(s)	480
HpyAV	CCTTC	2 cut(s)	79, 265
HpyCH4III	ACNGT	2 cut(s)	418, 464
HpyCH4IV	ACGT	2 cut(s)	250, 295
HpyCH4V	TGCA	2 cut(s)	172, 349
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 35
HpyF3I	CTNAG	2 cut(s)	53, 331
HpySE526I	ACGT	2 cut(s)	250, 295
Hsp92II	CATG	1 cut(s)	304
HspAI	GCGC	1 cut(s)	377
Kpn2I	TCCGGA	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	220, 303, 336
Lsp1109I	GCAGC	1 cut(s)	361
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	2 cut(s)	30, 35
MaeII	ACGT	2 cut(s)	250, 295
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	222, 305, 338
MboI	GATC	3 cut(s)	220, 303, 336
MboII	GAAGA	2 cut(s)	77, 280
MflI	RGATCY	1 cut(s)	336
MluCI	AATT	1 cut(s)	44
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	2 cut(s)	316, 432
MnlI	CCTC	6 cut(s)	52, 104, 196, 269, 425, 448
MroI	TCCGGA	1 cut(s)	159
MroXI	GAANNNNTTC	1 cut(s)	89
MseI	TTAA	2 cut(s)	126, 234
MslI	CAYNNNNRTG	1 cut(s)	249
MspI	CCGG	2 cut(s)	160, 421
MspR9I	CCNGG	1 cut(s)	396
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	480
MwoI	GCNNNNNNNGC	2 cut(s)	14, 35
NdeII	GATC	3 cut(s)	220, 303, 336
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	1 cut(s)	304
NlaIV	GGNNCC	1 cut(s)	411
NmuCI	GTSAC	1 cut(s)	101
OliI	CACNNNNGTG	1 cut(s)	249
PcsI	WCGNNNNNNNCGW	1 cut(s)	220
PdmI	GAANNNNTTC	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	7, 10, 351
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	394
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	411
PspPI	GGNCC	2 cut(s)	205, 460
PsuI	RGATCY	1 cut(s)	336
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	2 cut(s)	126, 234
SatI	GCNGC	3 cut(s)	6, 9, 350
Sau3AI	GATC	3 cut(s)	220, 303, 336
Sau96I	GGNCC	2 cut(s)	205, 460
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	396
SexAI	ACCWGGT	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	133
SinI	GGWCC	2 cut(s)	205, 460
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	1 cut(s)	44
SsiI	CCGC	3 cut(s)	140, 167, 480
SspMI	CTAG	2 cut(s)	30, 35
StyD4I	CCNGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	418, 464
TaiI	ACGT	2 cut(s)	253, 298
TaqI	TCGA	1 cut(s)	223
TasI	AATT	1 cut(s)	44
Tru1I	TTAA	2 cut(s)	126, 234
Tru9I	TTAA	2 cut(s)	126, 234
TseFI	GTSAC	1 cut(s)	101
TseI	GCWGC	3 cut(s)	5, 8, 349
Tsp45I	GTSAC	1 cut(s)	101
TspGWI	ACGGA	1 cut(s)	422
VpaK11BI	GGWCC	2 cut(s)	205, 460
XcmI	CCANNNNNNNNNTGG	1 cut(s)	421
XmnI	GAANNNNTTC	1 cut(s)	89
XspI	CTAG	2 cut(s)	30, 35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.