Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

6573177 .. 6574179

Gene Structure 1003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11141.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ATGGCAAAGAAGTATGTGGCAGCCTTTGTTGCGTCTATGACGGCTAGTTTCATCTCCAAGAATAAAGAGGTTCCTAGGCCGGTTGCAAATCTGACTCTGACGACGGCAACGCCAGCCATGGTTTTTAAGGCAAACTCCTTTCAAACCCTAAATACTCTGACGATGTTATCACTACCACCCCTCTTTCCCAAAGAGAAGAGATCAGTTCAGATAAGAGAGATTTCGACGTTCCCTTCGCCGACCAAGGTCTCTAGTGTGAGACGTGAAAGAAAGGAGGAGGAGGAGTTGCACGGAAAGCGAGCAAAGCACGTGCTGGCGTTAGTGTCACTGCATCTAAATCTTGAGGAGATGGGTTTTACTATATATATCGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

125

Amino Acids

13.89

Weight (kDa)

10.06

Isoelectric Point (pI)

53.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcvI	CACGTG	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	143
AjiI	CACGTC	1 cut(s)	263
Alw26I	GTCTC	2 cut(s)	253, 253
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	1 cut(s)	20
ArsI	GACNNNNNNTTYG	2 cut(s)	217, 249
AspA2I	CCTAGG	1 cut(s)	74
AvrII	CCTAGG	1 cut(s)	74
BbrPI	CACGTG	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	32
BccI	CCATC	1 cut(s)	343
BceAI	ACGGC	2 cut(s)	57, 120
BcoDI	GTCTC	2 cut(s)	253, 253
BfaI	CTAG	3 cut(s)	45, 75, 252
BisI	GCNGC	1 cut(s)	21
BlnI	CCTAGG	1 cut(s)	74
BlsI	GCNGC	1 cut(s)	22
BmgBI	CACGTC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	340
BoxI	GACNNNNGTC	1 cut(s)	245
BpuEI	CTTGAG	1 cut(s)	362
BsaAI	YACGTR	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	253
BsaJI	CCNNGG	3 cut(s)	74, 117, 243
BsaXI	ACNNNNNCTCC	2 cut(s)	269, 299
Bse118I	RCCGGY	1 cut(s)	79
BseDI	CCNNGG	3 cut(s)	74, 117, 243
BseRI	GAGGAG	4 cut(s)	290, 293, 296, 359
BseXI	GCAGC	1 cut(s)	32
BshFI	GGCC	1 cut(s)	79
BsiSI	CCGG	1 cut(s)	80
BsmAI	GTCTC	2 cut(s)	253, 253
BsmBI	CGTCTC	1 cut(s)	253
BsnI	GGCC	1 cut(s)	79
Bso31I	GGTCTC	1 cut(s)	253
Bsp143I	GATC	1 cut(s)	200
Bsp19I	CCATGG	1 cut(s)	117
BspANI	GGCC	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	72
BspTNI	GGTCTC	1 cut(s)	253
BsrFI	RCCGGY	1 cut(s)	79
BssAI	RCCGGY	1 cut(s)	79
BssECI	CCNNGG	3 cut(s)	74, 117, 243
BssMI	GATC	1 cut(s)	200
BssT1I	CCWWGG	3 cut(s)	74, 117, 243
Bst6I	CTCTTC	1 cut(s)	191
BstBAI	YACGTR	1 cut(s)	310
BstC8I	GCNNGC	3 cut(s)	114, 300, 315
BstDSI	CCRYGG	1 cut(s)	117
BstKTI	GATC	1 cut(s)	203
BstMAI	GTCTC	2 cut(s)	253, 253
BstMBI	GATC	1 cut(s)	200
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 113, 295, 304
BstPAI	GACNNNNGTC	1 cut(s)	245
BstV1I	GCAGC	1 cut(s)	32
BsuRI	GGCC	1 cut(s)	79
BtgI	CCRYGG	1 cut(s)	117
BtrI	CACGTC	1 cut(s)	263
BtsI	GCAGTG	1 cut(s)	326
BtsIMutI	CAGTG	1 cut(s)	326
Cac8I	GCNNGC	3 cut(s)	114, 300, 315
Cfr10I	RCCGGY	1 cut(s)	79
CseI	GACGC	1 cut(s)	21
CviAII	CATG	1 cut(s)	118
CviJI	RGCY	4 cut(s)	23, 44, 79, 116
CviKI_1	RGCY	4 cut(s)	23, 44, 79, 116
DpnI	GATC	1 cut(s)	202
DpnII	GATC	1 cut(s)	200
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco130I	CCWWGG	3 cut(s)	74, 117, 243
Eco31I	GGTCTC	1 cut(s)	253
Eco72I	CACGTG	1 cut(s)	310
EcoT14I	CCWWGG	3 cut(s)	74, 117, 243
ErhI	CCWWGG	3 cut(s)	74, 117, 243
Esp3I	CGTCTC	1 cut(s)	253
FaeI	CATG	1 cut(s)	121
FaiI	YATR	6 cut(s)	15, 38, 119, 362, 364, 366
FatI	CATG	1 cut(s)	117
Fnu4HI	GCNGC	1 cut(s)	21
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	3 cut(s)	45, 75, 252
GluI	GCNGC	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	79
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	21
Hin1II	CATG	1 cut(s)	121
HinfI	GANTC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	80
Hpy188I	TCNGA	5 cut(s)	93, 99, 159, 210, 371
Hpy188III	TCNNGA	1 cut(s)	341
Hpy99I	CGWCG	2 cut(s)	106, 229
HpyAV	CCTTC	1 cut(s)	243
HpyCH4IV	ACGT	3 cut(s)	227, 262, 309
HpyCH4V	TGCA	3 cut(s)	86, 289, 331
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 113, 295, 304
HpySE526I	ACGT	3 cut(s)	227, 262, 309
Hsp92II	CATG	1 cut(s)	121
Kzo9I	GATC	1 cut(s)	200
LpnPI	CCDG	3 cut(s)	93, 126, 299
Lsp1109I	GCAGC	1 cut(s)	32
LweI	GCATC	1 cut(s)	340
MaeI	CTAG	3 cut(s)	45, 75, 252
MaeII	ACGT	3 cut(s)	227, 262, 309
MaeIII	GTNAC	1 cut(s)	324
MalI	GATC	1 cut(s)	202
MboI	GATC	1 cut(s)	200
MboII	GAAGA	1 cut(s)	208
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	6 cut(s)	61, 191, 268, 271, 274, 337
MseI	TTAA	1 cut(s)	126
MspI	CCGG	1 cut(s)	80
MwoI	GCNNNNNNNGC	4 cut(s)	29, 113, 295, 304
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	200
NlaIII	CATG	1 cut(s)	121
NlaIV	GGNNCC	1 cut(s)	72
NmuCI	GTSAC	1 cut(s)	324
PkrI	GCNGC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	88
PmaCI	CACGTG	1 cut(s)	310
PmlI	CACGTG	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	88
Ppu21I	YACGTR	1 cut(s)	310
PshAI	GACNNNNGTC	1 cut(s)	245
PspCI	CACGTG	1 cut(s)	310
PspN4I	GGNNCC	1 cut(s)	72
SaqAI	TTAA	1 cut(s)	126
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	1 cut(s)	200
SchI	GAGTC	1 cut(s)	88
SetI	ASST	5 cut(s)	72, 230, 249, 265, 312
SfaNI	GCATC	1 cut(s)	340
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
SspMI	CTAG	3 cut(s)	45, 75, 252
StyI	CCWWGG	3 cut(s)	74, 117, 243
TaiI	ACGT	3 cut(s)	230, 265, 312
TaqI	TCGA	1 cut(s)	224
Tru1I	TTAA	1 cut(s)	126
Tru9I	TTAA	1 cut(s)	126
TscAI	CASTG	1 cut(s)	333
TseFI	GTSAC	1 cut(s)	324
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	324
TspDTI	ATGAA	1 cut(s)	40
TspGWI	ACGGA	1 cut(s)	306
TspRI	CASTG	1 cut(s)	333
XmaJI	CCTAGG	1 cut(s)	74
XspI	CTAG	3 cut(s)	45, 75, 252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.