RLG00000029225

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000172
Physical Location & Seq
Forward (+)
34817960 .. 34818407
448 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029225

Sequence Viewer

Length: 369 bp
ATGACACTGATGATATTAGCAATCTCTGATGATCGCTTCATGGTTTTCCATCATGACTCTTTCAAAGGAACTTCACGGTTGATGTGGCGTTTGAAAGGCAACCTCGAAATTCAAGAATGTGACACCAGGTTCCTGTTCACCTTCACCAGGGCGGAGGACATCACGCACATCAAGCGTGGCAGCGTATGGTCTTCCCAGAAGGCCCTTGGTGGCATTCCTTGGGCGTATCTTACACATGCCACAATTCAACTGATACGAGAAAGCCTATGGCCTATCAACGCTCTTGCGAGTCTCACCCAACGGTTTTGTGTCATGGCGTCTCACCTGGAGGAGTTCTTGGATCTCAAGTACGAGCGTCTAGTGGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

123

Amino Acids

14.28

Weight (kDa)

6.96

Isoelectric Point (pI)

28.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
AclWI GGATC 1 cut(s) 348
AcsI RAATTY 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 317
AfaI GTAC 1 cut(s) 350
AfiI CCNNNNNNNGG 1 cut(s) 147
AgsI TTSAA 4 cut(s) 64, 94, 113, 248
AjnI CCWGG 3 cut(s) 125, 146, 324
Alw26I GTCTC 2 cut(s) 296, 324
AlwI GGATC 1 cut(s) 348
AoxI GGCC 2 cut(s) 201, 269
ApeKI GCWGC 1 cut(s) 180
ApoI RAATTY 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 202
AsuHPI GGTGA 4 cut(s) 130, 136, 286, 314
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 192
BccI CCATC 1 cut(s) 57
BciT130I CCWGG 3 cut(s) 127, 148, 326
BcoDI GTCTC 2 cut(s) 296, 324
BfaI CTAG 1 cut(s) 359
BisI GCNGC 1 cut(s) 181
BlsI GCNGC 1 cut(s) 182
Bme1390I CCNGG 3 cut(s) 127, 148, 326
BmgT120I GGNCC 1 cut(s) 202
BmiI GGNNCC 1 cut(s) 131
BmrFI CCNGG 3 cut(s) 127, 148, 326
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 347
BpuEI CTTGAG 1 cut(s) 329
BsaHI GRCGYC 1 cut(s) 317
BsaJI CCNNGG 3 cut(s) 147, 205, 218
Bsc4I CCNNNNNNNGG 1 cut(s) 147
BseBI CCWGG 3 cut(s) 127, 148, 326
BseDI CCNNGG 3 cut(s) 147, 205, 218
BseLI CCNNNNNNNGG 1 cut(s) 147
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 1 cut(s) 192
BshFI GGCC 2 cut(s) 203, 271
BslI CCNNNNNNNGG 1 cut(s) 147
BsmAI GTCTC 2 cut(s) 296, 324
BsmBI CGTCTC 1 cut(s) 324
BsmI GAATGC 1 cut(s) 213
BsnI GGCC 2 cut(s) 203, 271
Bsp143I GATC 2 cut(s) 31, 340
BspACI CCGC 1 cut(s) 152
BspANI GGCC 2 cut(s) 203, 271
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 1 cut(s) 131
BspPI GGATC 1 cut(s) 348
BssECI CCNNGG 3 cut(s) 147, 205, 218
BssMI GATC 2 cut(s) 31, 340
BssNI GRCGYC 1 cut(s) 317
BssT1I CCWWGG 2 cut(s) 205, 218
Bst2UI CCWGG 3 cut(s) 127, 148, 326
Bst4CI ACNGT 2 cut(s) 78, 303
BstACI GRCGYC 1 cut(s) 317
BstENI CCTNNNNNAGG 1 cut(s) 145
BstKTI GATC 2 cut(s) 34, 343
BstMAI GTCTC 2 cut(s) 296, 324
BstMBI GATC 2 cut(s) 31, 340
BstMWI GCNNNNNNNGC 1 cut(s) 172
BstNI CCWGG 3 cut(s) 127, 148, 326
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 3 cut(s) 125, 146, 324
BstV1I GCAGC 1 cut(s) 192
BstV2I GAAGAC 1 cut(s) 183
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuRI GGCC 2 cut(s) 203, 271
BtsIMutI CAGTG 1 cut(s) 5
CciI TCATGA 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 202
CseI GACGC 2 cut(s) 306, 344
CsiI ACCWGGT 1 cut(s) 125
Csp6I GTAC 1 cut(s) 349
CviAII CATG 4 cut(s) 40, 53, 236, 313
CviJI RGCY 3 cut(s) 203, 264, 271
CviKI_1 RGCY 3 cut(s) 203, 264, 271
CviQI GTAC 1 cut(s) 349
DpnI GATC 2 cut(s) 33, 342
DpnII GATC 2 cut(s) 31, 340
EciI GGCGGA 1 cut(s) 167
Eco130I CCWWGG 2 cut(s) 205, 218
EcoNI CCTNNNNNAGG 1 cut(s) 145
EcoO109I RGGNCCY 1 cut(s) 202
EcoRII CCWGG 3 cut(s) 125, 146, 324
EcoT14I CCWWGG 2 cut(s) 205, 218
ErhI CCWWGG 2 cut(s) 205, 218
Esp3I CGTCTC 1 cut(s) 324
FaeI CATG 4 cut(s) 43, 56, 239, 316
FaiI YATR 6 cut(s) 41, 54, 187, 237, 268, 314
FatI CATG 4 cut(s) 39, 52, 235, 312
Fnu4HI GCNGC 1 cut(s) 181
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 1 cut(s) 359
GluI GCNGC 1 cut(s) 181
GsuI CTGGAG 1 cut(s) 347
HaeIII GGCC 2 cut(s) 203, 271
HgaI GACGC 2 cut(s) 306, 344
Hin1I GRCGYC 1 cut(s) 317
Hin1II CATG 4 cut(s) 43, 56, 239, 316
HinfI GANTC 2 cut(s) 56, 289
HphI GGTGA 4 cut(s) 130, 136, 286, 314
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 2 cut(s) 53, 113
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 151, 193
HpyCH4III ACNGT 2 cut(s) 78, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 172
Hsp92I GRCGYC 1 cut(s) 317
Hsp92II CATG 4 cut(s) 43, 56, 239, 316
Kzo9I GATC 2 cut(s) 31, 340
LpnPI CCDG 8 cut(s) 112, 133, 139, 146, 160, 209, 311, 338
Lsp1109I GCAGC 1 cut(s) 192
MabI ACCWGGT 1 cut(s) 125
MaeI CTAG 1 cut(s) 359
MaeIII GTNAC 1 cut(s) 119
MalI GATC 2 cut(s) 33, 342
MboI GATC 2 cut(s) 31, 340
MboII GAAGA 1 cut(s) 183
MflI RGATCY 1 cut(s) 340
MluCI AATT 2 cut(s) 108, 243
MlyI GAGTC 2 cut(s) 50, 298
MnlI CCTC 3 cut(s) 113, 148, 322
MspR9I CCNGG 3 cut(s) 127, 148, 326
Mva1269I GAATGC 1 cut(s) 213
MvaI CCWGG 3 cut(s) 127, 148, 326
MwoI GCNNNNNNNGC 1 cut(s) 172
NdeII GATC 2 cut(s) 31, 340
NlaIII CATG 4 cut(s) 43, 56, 239, 316
NlaIV GGNNCC 1 cut(s) 131
NmuCI GTSAC 1 cut(s) 119
NspI RCATGY 1 cut(s) 239
PagI TCATGA 1 cut(s) 52
PctI GAATGC 1 cut(s) 213
PkrI GCNGC 1 cut(s) 182
PleI GAGTC 2 cut(s) 50, 297
PpsI GAGTC 2 cut(s) 50, 297
Psp6I CCWGG 3 cut(s) 125, 146, 324
PspGI CCWGG 3 cut(s) 125, 146, 324
PspN4I GGNNCC 1 cut(s) 131
PspPI GGNCC 1 cut(s) 202
PsuI RGATCY 1 cut(s) 340
RsaI GTAC 1 cut(s) 350
RsaNI GTAC 1 cut(s) 349
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 2 cut(s) 31, 340
Sau96I GGNCC 1 cut(s) 202
SchI GAGTC 2 cut(s) 50, 298
ScrFI CCNGG 3 cut(s) 127, 148, 326
SetI ASST 4 cut(s) 105, 131, 143, 327
SexAI ACCWGGT 1 cut(s) 125
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 2 cut(s) 108, 243
SsiI CCGC 1 cut(s) 152
SspMI CTAG 1 cut(s) 359
StyD4I CCNGG 3 cut(s) 125, 146, 324
StyI CCWWGG 2 cut(s) 205, 218
TaaI ACNGT 2 cut(s) 78, 303
TaqI TCGA 1 cut(s) 105
TasI AATT 2 cut(s) 108, 243
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 1 cut(s) 180
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 1 cut(s) 28
TspRI CASTG 1 cut(s) 12
XagI CCTNNNNNAGG 1 cut(s) 145
XapI RAATTY 1 cut(s) 108
XceI RCATGY 1 cut(s) 239
XcmI CCANNNNNNNNNTGG 1 cut(s) 203
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.