Rmu_sc0005949.1_g000008

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005949.1
OG0000172
Physical Location & Seq
Reverse (-)
34401 .. 35735
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005949.1_g000008.1.cds

Sequence Viewer

Length: 1335 bp
atggctgctgctattgcttccatgactgccaggctagcgaccaagttgtcgctcagggagggtgaagaacctgtggacttggggaaccttagggttcctgggaaggaattcctcgctcgccacttttacttggtggggaaacttaatacctgtagggcggtggtgttggactctttccggagtgcagtgagatctatgtggagactgacggggacagtagaggtccaaccacggggtgaccgatttctgtttacgttcatccatgaacgtgatgttgctcgtgtgaagaagggaggtccatggggattccaacgtgccatgatcttgttgaacgattatgatggtttttcagagatcccggctgtaaagcttgattttgtttggatctgggttgagctccaaggtatttcaccaggtatcttaacggaacccacagtccggctagtgggaggaacgattagagaagtgttggaggtggaccgtgtggccctgcatcgtggagaagctcgggttcgactcatcttgtccataaacgacccgatccgcctggatcgcagagttagggtttcccctgttgatgttcttactttgcggttcaagtatgagagacttctggggcggtgcaggctctgcgtcctactgaatcatggtgggcagagatgccctagggaggatgaggtggaggctgcttctgtgggggaggaaggtttgccgcaggcaccgggtccggctctccccgccctcttgtttaaggctaactcccagccttctccttccctgctttcgactttcaaggtacccaacgtgctgaagaagaaacaggtgcagatacggccctttctggcgccggtgcctttgcctagttctgaaggttcttctgtgactcctgtggttggtgttcggcgtcctagagaagaggaggactttgaggagggtaaacgggctaaacatggtctagctcttatgccggctactctgcgaccagaaaatttagggctggcactttcctctgatggtctagtggaggtgaaggtatcatcgccgcccaaggtctacaagaagaggggcaggcctcggggacatagaaacaaggtcaaggttcttatgccggctactctgcgaccagaaaatttagggctggcactttcctctgatggtctagtggaggtgaaggtatcatcgtcgcccaaggtctacaagaagaggggcaggcctcggggacatagaaacaaggtcaaggcggcggcgcctatctgtgaaggcttggagtccatggctcttatgcatggtgggcttgagggggcagtggctttgcttgcttcccagtccgagtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

444

Amino Acids

48.9

Weight (kDa)

10.08

Isoelectric Point (pI)

50.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Style Settings
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
Acc65I GGTACC 1 cut(s) 796
AccB1I GGYRCC 5 cut(s) 718, 796, 844, 850, 1246
AccI GTMKAC 2 cut(s) 1053, 1194
AccIII TCCGGA 1 cut(s) 177
AciI CCGC 9 cut(s) 158, 544, 592, 619, 713, 738, 1043, 1241, 1244
AclWI GGATC 4 cut(s) 349, 392, 535, 558
AcsI RAATTY 3 cut(s) 107, 988, 1129
AcuI CTGAAG 2 cut(s) 830, 888
AcyI GRCGYC 3 cut(s) 845, 904, 1247
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 1 cut(s) 798
AfiI CCNNNNNNNGG 5 cut(s) 232, 438, 445, 670, 893
AgsI TTSAA 3 cut(s) 331, 598, 793
AjnI CCWGG 4 cut(s) 29, 97, 412, 546
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 4 cut(s) 370, 397, 506, 959
AluI AGCT 4 cut(s) 370, 397, 506, 959
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 2 cut(s) 196, 601
AlwI GGATC 4 cut(s) 349, 392, 535, 558
AlwNI CAGNNNCTG 1 cut(s) 630
Ama87I CYCGRG 3 cut(s) 507, 1074, 1215
Aor13HI TCCGGA 1 cut(s) 177
AoxI GGCC 4 cut(s) 486, 833, 1070, 1211
ApeKI GCWGC 3 cut(s) 5, 8, 686
ApoI RAATTY 3 cut(s) 107, 988, 1129
Asp700I GAANNNNTTC 1 cut(s) 107
Asp718I GGTACC 1 cut(s) 796
AspA2I CCTAGG 1 cut(s) 665
AspLEI GCGC 2 cut(s) 847, 1249
AspS9I GGNCC 6 cut(s) 223, 296, 478, 487, 725, 834
AsuC2I CCSGG 2 cut(s) 359, 723
AsuHPI GGTGA 5 cut(s) 74, 248, 402, 1039, 1180
AsuNHI GCTAGC 1 cut(s) 34
AvaI CYCGRG 3 cut(s) 507, 1074, 1215
AvaII GGWCC 4 cut(s) 223, 296, 478, 725
AvrII CCTAGG 1 cut(s) 665
AxyI CCTNAGG 1 cut(s) 89
BanI GGYRCC 5 cut(s) 718, 796, 844, 850, 1246
BanII GRGCYC 1 cut(s) 399
BauI CACGAG 1 cut(s) 279
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 673
BccI CCATC 3 cut(s) 335, 1007, 1148
BceAI ACGGC 1 cut(s) 848
BciT130I CCWGG 4 cut(s) 31, 99, 414, 548
BcnI CCSGG 2 cut(s) 359, 723
BcoDI GTCTC 2 cut(s) 196, 601
BfaI CTAG 8 cut(s) 35, 443, 666, 861, 909, 956, 1019, 1160
BfmI CTRYAG 1 cut(s) 151
BfoI RGCGCY 2 cut(s) 848, 1250
BglII AGATCT 1 cut(s) 191
BisI GCNGC 7 cut(s) 6, 9, 687, 713, 1043, 1242, 1245
BlnI CCTAGG 1 cut(s) 665
BlsI GCNGC 7 cut(s) 7, 10, 688, 714, 1044, 1243, 1246
Bme1390I CCNGG 6 cut(s) 31, 99, 359, 414, 548, 723
Bme18I GGWCC 4 cut(s) 223, 296, 478, 725
BmeT110I CYCGRG 3 cut(s) 507, 1074, 1215
BmgT120I GGNCC 6 cut(s) 223, 296, 478, 487, 725, 834
BmiI GGNNCC 9 cut(s) 86, 96, 429, 720, 726, 798, 846, 852, 1248
BmrFI CCNGG 6 cut(s) 31, 99, 359, 414, 548, 723
BmrI ACTGGG 1 cut(s) 1318
BmsI GCATC 2 cut(s) 502, 650
BmtI GCTAGC 1 cut(s) 38
BmuI ACTGGG 1 cut(s) 1318
Bpu10I CCTNAGC 1 cut(s) 53
BpuEI CTTGAG 1 cut(s) 1316
BpuMI CCSGG 2 cut(s) 359, 723
BsaHI GRCGYC 3 cut(s) 845, 904, 1247
BsaWI WCCGGW 1 cut(s) 177
Bsc4I CCNNNNNNNGG 5 cut(s) 232, 438, 445, 670, 893
Bse118I RCCGGY 3 cut(s) 847, 967, 1108
Bse1I ACTGG 1 cut(s) 1324
Bse21I CCTNAGG 1 cut(s) 89
BseAI TCCGGA 1 cut(s) 177
BseBI CCWGG 4 cut(s) 31, 99, 414, 548
BseGI GGATG 2 cut(s) 258, 679
BseLI CCNNNNNNNGG 5 cut(s) 232, 438, 445, 670, 893
BseMII CTCAG 1 cut(s) 67
BseNI ACTGG 1 cut(s) 1324
BseRI GAGGAG 2 cut(s) 932, 944
BseXI GCAGC 1 cut(s) 673
BseYI CCCAGC 1 cut(s) 762
BsgI GTGCAG 3 cut(s) 204, 643, 845
BshFI GGCC 4 cut(s) 488, 835, 1072, 1213
BshNI GGYRCC 5 cut(s) 718, 796, 844, 850, 1246
BsiHKAI GWGCWC 1 cut(s) 399
BsiHKCI CYCGRG 3 cut(s) 507, 1074, 1215
BsiSI CCGG 8 cut(s) 178, 359, 439, 722, 728, 848, 968, 1109
BslFI GGGAC 3 cut(s) 226, 1092, 1233
BslI CCNNNNNNNGG 5 cut(s) 232, 438, 445, 670, 893
BsmAI GTCTC 2 cut(s) 196, 601
BsmFI GGGAC 3 cut(s) 226, 1092, 1233
BsnI GGCC 4 cut(s) 488, 835, 1072, 1213
BsoBI CYCGRG 3 cut(s) 507, 1074, 1215
Bsp1286I GDGCHC 1 cut(s) 399
Bsp13I TCCGGA 1 cut(s) 177
Bsp143I GATC 6 cut(s) 191, 321, 354, 384, 540, 550
Bsp19I CCATGG 2 cut(s) 299, 1272
BspACI CCGC 9 cut(s) 158, 544, 592, 619, 713, 738, 1043, 1241, 1244
BspANI GGCC 4 cut(s) 488, 835, 1072, 1213
BspCNI CTCAG 1 cut(s) 66
BspEI TCCGGA 1 cut(s) 177
BspLI GGNNCC 9 cut(s) 86, 96, 429, 720, 726, 798, 846, 852, 1248
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 4 cut(s) 349, 392, 535, 558
BspT107I GGYRCC 5 cut(s) 718, 796, 844, 850, 1246
BsrFI RCCGGY 3 cut(s) 847, 967, 1108
BsrI ACTGG 1 cut(s) 1324
BssAI RCCGGY 3 cut(s) 847, 967, 1108
BssMI GATC 6 cut(s) 191, 321, 354, 384, 540, 550
BssNI GRCGYC 3 cut(s) 845, 904, 1247
BssSI CACGAG 1 cut(s) 279
BssT1I CCWWGG 6 cut(s) 299, 400, 665, 1047, 1188, 1272
Bst2BI CACGAG 1 cut(s) 279
Bst2UI CCWGG 4 cut(s) 31, 99, 414, 548
Bst4CI ACNGT 3 cut(s) 217, 436, 482
Bst6I CTCTTC 3 cut(s) 909, 1055, 1196
BstACI GRCGYC 3 cut(s) 845, 904, 1247
BstAPI GCANNNNNTGC 1 cut(s) 630
BstDEI CTNAG 2 cut(s) 53, 89
BstDSI CCRYGG 3 cut(s) 230, 299, 1272
BstEII GGTNACC 1 cut(s) 236
BstF5I GGATG 2 cut(s) 258, 679
BstH2I RGCGCY 2 cut(s) 848, 1250
BstHHI GCGC 2 cut(s) 847, 1249
BstKTI GATC 6 cut(s) 194, 324, 357, 387, 543, 553
BstMAI GTCTC 2 cut(s) 196, 601
BstMBI GATC 6 cut(s) 191, 321, 354, 384, 540, 550
BstMWI GCNNNNNNNGC 9 cut(s) 14, 35, 552, 625, 630, 737, 832, 1291, 1316
BstNI CCWGG 4 cut(s) 31, 99, 414, 548
BstPI GGTNACC 1 cut(s) 236
BstSCI CCNGG 6 cut(s) 29, 97, 357, 412, 546, 721
BstSFI CTRYAG 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 673
BstX2I RGATCY 3 cut(s) 191, 354, 384
BstYI RGATCY 3 cut(s) 191, 354, 384
Bsu36I CCTNAGG 1 cut(s) 89
BsuRI GGCC 4 cut(s) 488, 835, 1072, 1213
BtgI CCRYGG 3 cut(s) 230, 299, 1272
BtgZI GCGATG 1 cut(s) 1023
BtsCI GGATG 2 cut(s) 258, 679
BtsI GCAGTG 2 cut(s) 192, 1311
BtsIMutI CAGTG 2 cut(s) 192, 1311
CaiI CAGNNNCTG 1 cut(s) 630
CfoI GCGC 2 cut(s) 847, 1249
Cfr10I RCCGGY 3 cut(s) 847, 967, 1108
Cfr13I GGNCC 6 cut(s) 223, 296, 478, 487, 725, 834
CseI GACGC 2 cut(s) 622, 893
CsiI ACCWGGT 1 cut(s) 412
Csp6I GTAC 1 cut(s) 797
CviAII CATG 8 cut(s) 22, 263, 300, 319, 647, 950, 1273, 1286
CviQI GTAC 1 cut(s) 797
DdeI CTNAG 2 cut(s) 53, 89
DinI GGCGCC 2 cut(s) 846, 1248
DpnI GATC 6 cut(s) 193, 323, 356, 386, 542, 552
DpnII GATC 6 cut(s) 191, 321, 354, 384, 540, 550
DraIII CACNNNGTG 1 cut(s) 236
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 3 cut(s) 909, 1055, 1196
EarI CTCTTC 3 cut(s) 909, 1055, 1196
EciI GGCGGA 1 cut(s) 533
Ecl136II GAGCTC 1 cut(s) 397
Eco130I CCWWGG 6 cut(s) 299, 400, 665, 1047, 1188, 1272
Eco147I AGGCCT 2 cut(s) 1072, 1213
Eco24I GRGCYC 1 cut(s) 399
Eco47I GGWCC 4 cut(s) 223, 296, 478, 725
Eco53kI GAGCTC 1 cut(s) 397
Eco57I CTGAAG 2 cut(s) 830, 888
Eco81I CCTNAGG 1 cut(s) 89
Eco88I CYCGRG 3 cut(s) 507, 1074, 1215
Eco91I GGTNACC 1 cut(s) 236
EcoICRI GAGCTC 1 cut(s) 397
EcoO65I GGTNACC 1 cut(s) 236
EcoRI GAATTC 1 cut(s) 107
EcoRII CCWGG 4 cut(s) 29, 97, 412, 546
EcoT14I CCWWGG 6 cut(s) 299, 400, 665, 1047, 1188, 1272
EcoT22I ATGCAT 1 cut(s) 1287
EcoT38I GRGCYC 1 cut(s) 399
EgeI GGCGCC 2 cut(s) 846, 1248
EheI GGCGCC 2 cut(s) 846, 1248
ErhI CCWWGG 6 cut(s) 299, 400, 665, 1047, 1188, 1272
FaeI CATG 8 cut(s) 25, 266, 303, 322, 650, 953, 1276, 1289
FaqI GGGAC 3 cut(s) 226, 1092, 1233
FatI CATG 8 cut(s) 21, 262, 299, 318, 646, 949, 1272, 1285
FauI CCCGC 1 cut(s) 745
FblI GTMKAC 2 cut(s) 1053, 1194
Fnu4HI GCNGC 7 cut(s) 6, 9, 687, 713, 1043, 1242, 1245
FokI GGATG 2 cut(s) 245, 686
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 7 cut(s) 6, 9, 687, 713, 1043, 1242, 1245
FspBI CTAG 8 cut(s) 35, 443, 666, 861, 909, 956, 1019, 1160
GlaI GCGC 2 cut(s) 846, 1248
GluI GCNGC 7 cut(s) 6, 9, 687, 713, 1043, 1242, 1245
GsaI CCCAGC 1 cut(s) 766
HaeII RGCGCY 2 cut(s) 848, 1250
HaeIII GGCC 4 cut(s) 488, 835, 1072, 1213
HapII CCGG 8 cut(s) 178, 359, 439, 722, 728, 848, 968, 1109
HgaI GACGC 2 cut(s) 622, 893
HhaI GCGC 2 cut(s) 847, 1249
Hin1I GRCGYC 3 cut(s) 845, 904, 1247
Hin1II CATG 8 cut(s) 25, 266, 303, 322, 650, 953, 1276, 1289
Hin6I GCGC 2 cut(s) 845, 1247
HinP1I GCGC 2 cut(s) 845, 1247
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 6 cut(s) 170, 306, 516, 643, 883, 1268
HpaII CCGG 8 cut(s) 178, 359, 439, 722, 728, 848, 968, 1109
HphI GGTGA 5 cut(s) 74, 248, 402, 1039, 1180
Hpy166II GTNNAC 6 cut(s) 76, 252, 478, 938, 1054, 1195
Hpy188I TCNGA 5 cut(s) 352, 868, 1012, 1153, 1330
Hpy188III TCNNGA 1 cut(s) 178
Hpy8I GTNNAC 6 cut(s) 76, 252, 478, 938, 1054, 1195
Hpy99I CGWCG 1 cut(s) 1186
HpyAV CCTTC 9 cut(s) 97, 283, 698, 777, 783, 863, 1024, 1165, 1253
HpyCH4III ACNGT 3 cut(s) 217, 436, 482
HpyCH4IV ACGT 4 cut(s) 254, 268, 313, 804
HpyCH4V TGCA 5 cut(s) 185, 493, 624, 826, 1285
HpyF10VI GCNNNNNNNGC 9 cut(s) 14, 35, 552, 625, 630, 737, 832, 1291, 1316
HpyF3I CTNAG 2 cut(s) 53, 89
HpySE526I ACGT 4 cut(s) 254, 268, 313, 804
Hsp92I GRCGYC 3 cut(s) 845, 904, 1247
Hsp92II CATG 8 cut(s) 25, 266, 303, 322, 650, 953, 1276, 1289
HspAI GCGC 2 cut(s) 845, 1247
KasI GGCGCC 2 cut(s) 844, 1246
Kpn2I TCCGGA 1 cut(s) 177
KpnI GGTACC 1 cut(s) 800
KroI GCCGGC 2 cut(s) 967, 1108
KroNI GCCGGC 2 cut(s) 969, 1110
Kzo9I GATC 6 cut(s) 191, 321, 354, 384, 540, 550
LmnI GCTCC 1 cut(s) 402
Lsp1109I GCAGC 1 cut(s) 673
LweI GCATC 2 cut(s) 502, 650
MabI ACCWGGT 1 cut(s) 412
MaeI CTAG 8 cut(s) 35, 443, 666, 861, 909, 956, 1019, 1160
MaeII ACGT 4 cut(s) 254, 268, 313, 804
MaeIII GTNAC 2 cut(s) 236, 880
MalI GATC 6 cut(s) 193, 323, 356, 386, 542, 552
MboI GATC 6 cut(s) 191, 321, 354, 384, 540, 550
MboII GAAGA 8 cut(s) 77, 298, 823, 826, 867, 926, 1072, 1213
MflI RGATCY 3 cut(s) 191, 354, 384
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 3 cut(s) 107, 988, 1129
Mly113I GGCGCC 2 cut(s) 845, 1247
MlyI GAGTC 4 cut(s) 164, 510, 877, 1277
MmeI TCCRAC 4 cut(s) 147, 250, 334, 450
Mph1103I ATGCAT 1 cut(s) 1287
MroI TCCGGA 1 cut(s) 177
MroNI GCCGGC 2 cut(s) 967, 1108
MroXI GAANNNNTTC 1 cut(s) 107
MseI TTAA 3 cut(s) 144, 422, 750
MslI CAYNNNNRTG 1 cut(s) 267
MspI CCGG 8 cut(s) 178, 359, 439, 722, 728, 848, 968, 1109
MspR9I CCNGG 6 cut(s) 31, 99, 359, 414, 548, 723
MvaI CCWGG 4 cut(s) 31, 99, 414, 548
MwoI GCNNNNNNNGC 9 cut(s) 14, 35, 552, 625, 630, 737, 832, 1291, 1316
NaeI GCCGGC 2 cut(s) 969, 1110
NarI GGCGCC 2 cut(s) 845, 1247
NciI CCSGG 2 cut(s) 359, 723
NcoI CCATGG 2 cut(s) 299, 1272
NdeII GATC 6 cut(s) 191, 321, 354, 384, 540, 550
NgoMIV GCCGGC 2 cut(s) 967, 1108
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 8 cut(s) 25, 266, 303, 322, 650, 953, 1276, 1289
NlaIV GGNNCC 9 cut(s) 86, 96, 429, 720, 726, 798, 846, 852, 1248
NmuCI GTSAC 2 cut(s) 236, 880
NsiI ATGCAT 1 cut(s) 1287
PceI AGGCCT 2 cut(s) 1072, 1213
PcsI WCGNNNNNNNCGW 1 cut(s) 238
PdiI GCCGGC 2 cut(s) 969, 1110
PdmI GAANNNNTTC 1 cut(s) 107
PfeI GAWTC 2 cut(s) 306, 643
PkrI GCNGC 7 cut(s) 7, 10, 688, 714, 1044, 1243, 1246
PleI GAGTC 4 cut(s) 164, 510, 877, 1276
PluTI GGCGCC 2 cut(s) 848, 1250
PpsI GAGTC 4 cut(s) 164, 510, 877, 1276
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 4 cut(s) 29, 97, 412, 546
PspEI GGTNACC 1 cut(s) 236
PspFI CCCAGC 1 cut(s) 762
PspGI CCWGG 4 cut(s) 29, 97, 412, 546
PspN4I GGNNCC 9 cut(s) 86, 96, 429, 720, 726, 798, 846, 852, 1248
PspPI GGNCC 6 cut(s) 223, 296, 478, 487, 725, 834
PstNI CAGNNNCTG 1 cut(s) 630
PsuI RGATCY 3 cut(s) 191, 354, 384
RsaI GTAC 1 cut(s) 798
RsaNI GTAC 1 cut(s) 797
RseI CAYNNNNRTG 1 cut(s) 267
SacI GAGCTC 1 cut(s) 399
SaqAI TTAA 3 cut(s) 144, 422, 750
SatI GCNGC 7 cut(s) 6, 9, 687, 713, 1043, 1242, 1245
Sau3AI GATC 6 cut(s) 191, 321, 354, 384, 540, 550
Sau96I GGNCC 6 cut(s) 223, 296, 478, 487, 725, 834
SchI GAGTC 4 cut(s) 164, 510, 877, 1277
ScrFI CCNGG 6 cut(s) 31, 99, 359, 414, 548, 723
SduI GDGCHC 1 cut(s) 399
SexAI ACCWGGT 1 cut(s) 412
SfaNI GCATC 2 cut(s) 502, 650
SfcI CTRYAG 1 cut(s) 151
SfoI GGCGCC 2 cut(s) 846, 1248
SgrAI CRCCGGYG 1 cut(s) 847
SinI GGWCC 4 cut(s) 223, 296, 478, 725
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 1 cut(s) 1295
SmoI CTYRAG 1 cut(s) 1295
Sse9I AATT 3 cut(s) 107, 988, 1129
SseBI AGGCCT 2 cut(s) 1072, 1213
SsiI CCGC 9 cut(s) 158, 544, 592, 619, 713, 738, 1043, 1241, 1244
SspDI GGCGCC 2 cut(s) 844, 1246
SspMI CTAG 8 cut(s) 35, 443, 666, 861, 909, 956, 1019, 1160
SstI GAGCTC 1 cut(s) 399
StuI AGGCCT 2 cut(s) 1072, 1213
StyD4I CCNGG 6 cut(s) 29, 97, 357, 412, 546, 721
StyI CCWWGG 6 cut(s) 299, 400, 665, 1047, 1188, 1272
TaaI ACNGT 3 cut(s) 217, 436, 482
TaiI ACGT 4 cut(s) 257, 271, 316, 807
TaqI TCGA 2 cut(s) 514, 785
TaqII GACCGA 1 cut(s) 255
TasI AATT 3 cut(s) 107, 988, 1129
TauI GCSGC 4 cut(s) 715, 1045, 1244, 1247
TfiI GAWTC 2 cut(s) 306, 643
Tru1I TTAA 3 cut(s) 144, 422, 750
Tru9I TTAA 3 cut(s) 144, 422, 750
TscAI CASTG 2 cut(s) 192, 1311
TseFI GTSAC 2 cut(s) 236, 880
TseI GCWGC 3 cut(s) 5, 8, 686
Tsp45I GTSAC 2 cut(s) 236, 880
TspDTI ATGAA 2 cut(s) 247, 279
TspGWI ACGGA 1 cut(s) 440
TspRI CASTG 2 cut(s) 192, 1311
VpaK11BI GGWCC 4 cut(s) 223, 296, 478, 725
XapI RAATTY 3 cut(s) 107, 988, 1129
XmaJI CCTAGG 1 cut(s) 665
XmiI GTMKAC 2 cut(s) 1053, 1194
XmnI GAANNNNTTC 1 cut(s) 107
XspI CTAG 8 cut(s) 35, 443, 666, 861, 909, 956, 1019, 1160
Zsp2I ATGCAT 1 cut(s) 1287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.