Rmu_sc0004350.1_g000007

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004350.1
OG0000172
Physical Location & Seq
Reverse (-)
18170 .. 19043
874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004350.1_g000007.1.cds

Sequence Viewer

Length: 828 bp
atgacagccaggctagcgaccaagttgtcgctcagagagggtgaggaaccggttgacctgggaaatcttagggttccggggaaggaatttctcgctcgccgtttctacttggtggggaaactcaacacttgtagggcggtggttttggattcttttaggagcgcggtccgttcaatgtggagattgacggggactgtggaggttcaaccacgcggggaccgttttctgtttacgttcactcttgaacgtgatgtcgcccgggtgaagaagggaggcccttggagttttcagagggctatgcttttgttgaatgactacgatggcttttcagtgattgatgcggtgaagcttgacttcgtttggatctgggttgggatccatggccttccaccgggtatcttgacggaacccactgtccggctggtgggcggaacaatcggtgaggtcttggaggttgatcaaccggctatccgacgtggtgatgctcgggttcggattactttggccatcaatgatctggtgcgtttggatcgtcgtgttagggtttcgcccactgatgttctcactttgaggtttcagtatgagaggttattgggaaggtgccgactgtgtactttcttgaaccacggaggacagaggtgttcaagggaggaggtggaggcgactgactctgtggtggacgatgggctaattccacatagaaataaggtcaagaaggcgatgtctatgagtgagggatcggggtccatggtcattcctgaggctgacgttggtagtgctcctggacttgagggagcgccgactcctccagattccagcgctgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

275

Amino Acids

30.5

Weight (kDa)

9.18

Isoelectric Point (pI)

37.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 25
AccB1I GGYRCC 1 cut(s) 600
AccII CGCG 2 cut(s) 164, 213
AciI CCGC 5 cut(s) 137, 164, 213, 341, 429
AclWI GGATC 5 cut(s) 370, 371, 383, 537, 745
AcoI YGGCCR 1 cut(s) 504
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 613
AfeI AGCGCT 1 cut(s) 820
AfiI CCNNNNNNNGG 3 cut(s) 391, 417, 424
AgeI ACCGGT 1 cut(s) 49
AgsI TTSAA 6 cut(s) 174, 206, 245, 310, 622, 645
AjiI CACGTC 1 cut(s) 476
AjnI CCWGG 3 cut(s) 8, 57, 781
AloI GAACNNNNNNTCC 2 cut(s) 399, 431
AluBI AGCT 1 cut(s) 349
AluI AGCT 1 cut(s) 349
Alw21I GWGCWC 1 cut(s) 781
AlwI GGATC 5 cut(s) 370, 371, 383, 537, 745
Ama87I CYCGRG 2 cut(s) 258, 486
Aor51HI AGCGCT 1 cut(s) 820
AoxI GGCC 3 cut(s) 274, 382, 504
ApoI RAATTY 1 cut(s) 86
AsiGI ACCGGT 1 cut(s) 49
AspLEI GCGC 3 cut(s) 164, 799, 821
AspS9I GGNCC 4 cut(s) 166, 217, 275, 744
AsuC2I CCSGG 4 cut(s) 78, 259, 260, 393
AsuHPI GGTGA 5 cut(s) 53, 274, 355, 452, 491
AsuNHI GCTAGC 1 cut(s) 13
AvaI CYCGRG 2 cut(s) 258, 486
AvaII GGWCC 3 cut(s) 166, 217, 744
AxyI CCTNAGG 1 cut(s) 759
BalI TGGCCA 1 cut(s) 506
BamHI GGATCC 1 cut(s) 375
BanI GGYRCC 1 cut(s) 600
Bbv12I GWGCWC 1 cut(s) 781
BccI CCATC 3 cut(s) 314, 515, 677
BceAI ACGGC 1 cut(s) 84
BciT130I CCWGG 3 cut(s) 10, 59, 783
BclI TGATCA 1 cut(s) 457
BcnI CCSGG 4 cut(s) 78, 259, 260, 393
BfaI CTAG 1 cut(s) 14
BfoI RGCGCY 2 cut(s) 800, 822
Bme1390I CCNGG 7 cut(s) 10, 59, 78, 259, 260, 393, 783
Bme18I GGWCC 3 cut(s) 166, 217, 744
BmeT110I CYCGRG 2 cut(s) 258, 486
BmgBI CACGTC 1 cut(s) 476
BmgT120I GGNCC 4 cut(s) 166, 217, 275, 744
BmiI GGNNCC 7 cut(s) 48, 75, 218, 377, 408, 602, 745
BmrFI CCNGG 7 cut(s) 10, 59, 78, 259, 260, 393, 783
BmsI GCATC 2 cut(s) 328, 472
BmtI GCTAGC 1 cut(s) 17
BpmI CTGGAG 1 cut(s) 792
BpuEI CTTGAG 1 cut(s) 809
BpuMI CCSGG 4 cut(s) 78, 259, 260, 393
BsaJI CCNNGG 7 cut(s) 58, 77, 258, 278, 379, 625, 747
BsaWI WCCGGW 1 cut(s) 49
Bsc4I CCNNNNNNNGG 3 cut(s) 391, 417, 424
Bse118I RCCGGY 2 cut(s) 49, 463
Bse21I CCTNAGG 1 cut(s) 759
BseBI CCWGG 3 cut(s) 10, 59, 783
BseDI CCNNGG 7 cut(s) 58, 77, 258, 278, 379, 625, 747
BseLI CCNNNNNNNGG 3 cut(s) 391, 417, 424
BseMII CTCAG 2 cut(s) 46, 750
BseRI GAGGAG 2 cut(s) 665, 795
Bsh1236I CGCG 2 cut(s) 164, 213
BshFI GGCC 3 cut(s) 276, 384, 506
BshNI GGYRCC 1 cut(s) 600
BshTI ACCGGT 1 cut(s) 49
BsiHKAI GWGCWC 1 cut(s) 781
BsiHKCI CYCGRG 2 cut(s) 258, 486
BsiSI CCGG 6 cut(s) 50, 77, 259, 392, 418, 464
BslFI GGGAC 2 cut(s) 205, 230
BslI CCNNNNNNNGG 3 cut(s) 391, 417, 424
BsmFI GGGAC 2 cut(s) 205, 230
BsnI GGCC 3 cut(s) 276, 384, 506
BsoBI CYCGRG 2 cut(s) 258, 486
Bsp1286I GDGCHC 1 cut(s) 781
Bsp143I GATC 6 cut(s) 363, 375, 457, 514, 529, 737
Bsp19I CCATGG 2 cut(s) 379, 747
BspACI CCGC 5 cut(s) 137, 164, 213, 341, 429
BspANI GGCC 3 cut(s) 276, 384, 506
BspCNI CTCAG 2 cut(s) 45, 751
BspFNI CGCG 2 cut(s) 164, 213
BspLI GGNNCC 7 cut(s) 48, 75, 218, 377, 408, 602, 745
BspOI GCTAGC 1 cut(s) 17
BspPI GGATC 5 cut(s) 370, 371, 383, 537, 745
BspT107I GGYRCC 1 cut(s) 600
BsrFI RCCGGY 2 cut(s) 49, 463
BssAI RCCGGY 2 cut(s) 49, 463
BssECI CCNNGG 7 cut(s) 58, 77, 258, 278, 379, 625, 747
BssMI GATC 6 cut(s) 363, 375, 457, 514, 529, 737
BssT1I CCWWGG 3 cut(s) 278, 379, 747
Bst2UI CCWGG 3 cut(s) 10, 59, 783
Bst4CI ACNGT 4 cut(s) 196, 221, 415, 609
BstC8I GCNNGC 2 cut(s) 15, 97
BstDEI CTNAG 3 cut(s) 32, 68, 759
BstDSI CCRYGG 3 cut(s) 379, 625, 747
BstFNI CGCG 2 cut(s) 164, 213
BstH2I RGCGCY 2 cut(s) 800, 822
BstHHI GCGC 3 cut(s) 164, 799, 821
BstKTI GATC 6 cut(s) 366, 378, 460, 517, 532, 740
BstMBI GATC 6 cut(s) 363, 375, 457, 514, 529, 737
BstMWI GCNNNNNNNGC 1 cut(s) 14
BstNI CCWGG 3 cut(s) 10, 59, 783
BstSCI CCNGG 7 cut(s) 8, 57, 76, 257, 258, 391, 781
BstUI CGCG 2 cut(s) 164, 213
BstX2I RGATCY 2 cut(s) 363, 375
BstYI RGATCY 2 cut(s) 363, 375
Bsu36I CCTNAGG 1 cut(s) 759
BsuRI GGCC 3 cut(s) 276, 384, 506
BtgI CCRYGG 3 cut(s) 379, 625, 747
BtgZI GCGATG 1 cut(s) 734
BtrI CACGTC 1 cut(s) 476
BtsIMutI CAGTG 3 cut(s) 336, 411, 552
Cac8I GCNNGC 2 cut(s) 15, 97
CfoI GCGC 3 cut(s) 164, 799, 821
Cfr10I RCCGGY 2 cut(s) 49, 463
Cfr13I GGNCC 4 cut(s) 166, 217, 275, 744
Cfr9I CCCGGG 1 cut(s) 258
CpoI CGGWCCG 1 cut(s) 166
Csp6I GTAC 1 cut(s) 612
CspAI ACCGGT 1 cut(s) 49
CspI CGGWCCG 1 cut(s) 166
CviAII CATG 2 cut(s) 380, 748
CviQI GTAC 1 cut(s) 612
DdeI CTNAG 3 cut(s) 32, 68, 759
DpnI GATC 6 cut(s) 365, 377, 459, 516, 531, 739
DpnII GATC 6 cut(s) 363, 375, 457, 514, 529, 737
DrdI GACNNNNNNGTC 1 cut(s) 25
DseDI GACNNNNNNGTC 1 cut(s) 25
EaeI YGGCCR 1 cut(s) 504
EciI GGCGGA 1 cut(s) 444
Eco130I CCWWGG 3 cut(s) 278, 379, 747
Eco47I GGWCC 3 cut(s) 166, 217, 744
Eco47III AGCGCT 1 cut(s) 820
Eco81I CCTNAGG 1 cut(s) 759
Eco88I CYCGRG 2 cut(s) 258, 486
EcoO109I RGGNCCY 1 cut(s) 275
EcoRII CCWGG 3 cut(s) 8, 57, 781
EcoT14I CCWWGG 3 cut(s) 278, 379, 747
ErhI CCWWGG 3 cut(s) 278, 379, 747
FaeI CATG 2 cut(s) 383, 751
FaiI YATR 6 cut(s) 299, 381, 582, 699, 728, 749
FalI AAGNNNNNCTT 2 cut(s) 338, 370
FaqI GGGAC 2 cut(s) 205, 230
FatI CATG 2 cut(s) 379, 747
FauI CCCGC 1 cut(s) 206
FbaI TGATCA 1 cut(s) 457
FspBI CTAG 1 cut(s) 14
GlaI GCGC 3 cut(s) 163, 798, 820
GsuI CTGGAG 1 cut(s) 792
HaeII RGCGCY 2 cut(s) 800, 822
HaeIII GGCC 3 cut(s) 276, 384, 506
HapII CCGG 6 cut(s) 50, 77, 259, 392, 418, 464
HhaI GCGC 3 cut(s) 164, 799, 821
Hin1II CATG 2 cut(s) 383, 751
Hin6I GCGC 3 cut(s) 162, 797, 819
HinP1I GCGC 3 cut(s) 162, 797, 819
HincII GTYRAC 1 cut(s) 55
HindII GTYRAC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 347
HinfI GANTC 4 cut(s) 149, 668, 802, 812
HpaII CCGG 6 cut(s) 50, 77, 259, 392, 418, 464
HphI GGTGA 5 cut(s) 53, 274, 355, 452, 491
Hpy166II GTNNAC 5 cut(s) 55, 231, 237, 612, 679
Hpy188I TCNGA 4 cut(s) 35, 291, 473, 495
Hpy188III TCNNGA 6 cut(s) 242, 400, 619, 712, 758, 809
Hpy8I GTNNAC 5 cut(s) 55, 231, 237, 612, 679
Hpy99I CGWCG 2 cut(s) 477, 537
HpyAV CCTTC 5 cut(s) 76, 262, 395, 591, 709
HpyCH4III ACNGT 4 cut(s) 196, 221, 415, 609
HpyCH4IV ACGT 4 cut(s) 233, 247, 475, 768
HpyF10VI GCNNNNNNNGC 1 cut(s) 14
HpyF3I CTNAG 3 cut(s) 32, 68, 759
HpySE526I ACGT 4 cut(s) 233, 247, 475, 768
Hsp92II CATG 2 cut(s) 383, 751
HspAI GCGC 3 cut(s) 162, 797, 819
Ksp22I TGATCA 1 cut(s) 457
Kzo9I GATC 6 cut(s) 363, 375, 457, 514, 529, 737
LmnI GCTCC 3 cut(s) 159, 784, 794
LweI GCATC 2 cut(s) 328, 472
MaeI CTAG 1 cut(s) 14
MaeII ACGT 4 cut(s) 233, 247, 475, 768
MalI GATC 6 cut(s) 365, 377, 459, 516, 531, 739
MboI GATC 6 cut(s) 363, 375, 457, 514, 529, 737
MboII GAAGA 1 cut(s) 277
MflI RGATCY 2 cut(s) 363, 375
MhlI GDGCHC 1 cut(s) 781
MlsI TGGCCA 1 cut(s) 506
MluCI AATT 2 cut(s) 86, 690
MluNI TGGCCA 1 cut(s) 506
MlyI GAGTC 2 cut(s) 662, 796
MmeI TCCRAC 1 cut(s) 496
Mox20I TGGCCA 1 cut(s) 506
MscI TGGCCA 1 cut(s) 506
Msp20I TGGCCA 1 cut(s) 506
MspI CCGG 6 cut(s) 50, 77, 259, 392, 418, 464
MspR9I CCNGG 7 cut(s) 10, 59, 78, 259, 260, 393, 783
MvaI CCWGG 3 cut(s) 10, 59, 783
MvnI CGCG 2 cut(s) 164, 213
MwoI GCNNNNNNNGC 1 cut(s) 14
NciI CCSGG 4 cut(s) 78, 259, 260, 393
NcoI CCATGG 2 cut(s) 379, 747
NdeII GATC 6 cut(s) 363, 375, 457, 514, 529, 737
NheI GCTAGC 1 cut(s) 13
NlaIII CATG 2 cut(s) 383, 751
NlaIV GGNNCC 7 cut(s) 48, 75, 218, 377, 408, 602, 745
PcsI WCGNNNNNNNCGW 1 cut(s) 217
PfeI GAWTC 2 cut(s) 149, 812
PfoI TCCNGGA 1 cut(s) 781
PinAI ACCGGT 1 cut(s) 49
PleI GAGTC 2 cut(s) 662, 796
PpsI GAGTC 2 cut(s) 662, 796
Psp6I CCWGG 3 cut(s) 8, 57, 781
PspGI CCWGG 3 cut(s) 8, 57, 781
PspN4I GGNNCC 7 cut(s) 48, 75, 218, 377, 408, 602, 745
PspPI GGNCC 4 cut(s) 166, 217, 275, 744
PsuI RGATCY 2 cut(s) 363, 375
RsaI GTAC 1 cut(s) 613
RsaNI GTAC 1 cut(s) 612
Rsr2I CGGWCCG 1 cut(s) 166
RsrII CGGWCCG 1 cut(s) 166
Sau3AI GATC 6 cut(s) 363, 375, 457, 514, 529, 737
Sau96I GGNCC 4 cut(s) 166, 217, 275, 744
SchI GAGTC 2 cut(s) 662, 796
ScrFI CCNGG 7 cut(s) 10, 59, 78, 259, 260, 393, 783
SduI GDGCHC 1 cut(s) 781
SfaNI GCATC 2 cut(s) 328, 472
SinI GGWCC 3 cut(s) 166, 217, 744
SmaI CCCGGG 1 cut(s) 260
SmlI CTYRAG 1 cut(s) 788
SmoI CTYRAG 1 cut(s) 788
Sse9I AATT 2 cut(s) 86, 690
SsiI CCGC 5 cut(s) 137, 164, 213, 341, 429
SspMI CTAG 1 cut(s) 14
StyD4I CCNGG 7 cut(s) 8, 57, 76, 257, 258, 391, 781
StyI CCWWGG 3 cut(s) 278, 379, 747
TaaI ACNGT 4 cut(s) 196, 221, 415, 609
TaiI ACGT 4 cut(s) 236, 250, 478, 771
TasI AATT 2 cut(s) 86, 690
TatI WGTACW 1 cut(s) 611
TfiI GAWTC 2 cut(s) 149, 812
TscAI CASTG 3 cut(s) 336, 418, 559
TspGWI ACGGA 3 cut(s) 158, 419, 642
TspMI CCCGGG 1 cut(s) 258
TspRI CASTG 3 cut(s) 336, 418, 559
VpaK11BI GGWCC 3 cut(s) 166, 217, 744
XapI RAATTY 1 cut(s) 86
XcmI CCANNNNNNNNNTGG 2 cut(s) 418, 514
XmaI CCCGGG 1 cut(s) 258
XspI CTAG 1 cut(s) 14
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.