Rmu_sc0023170.1_g000002

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0023170.1
Physical Location & Seq
Forward (+)
1952 .. 2887
936 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0023170.1_g000002.1.cds

Sequence Viewer

Length: 774 bp
atggctgctgctattgcctccatgaccgccaggctagcgaccaagttgtcgcttagagagggtgaagaaccggtggacttggggaaccttagggttctggggaaggaatttcttgctcgccatttttatttggtggggaaactcaacacttgtagggcggtagtcttggatttgttctggagtgtggttagatccatgtggagactaacggggacggtggaggtccaacccctgggtgacaaatttttgtttacgttcacctatgaacgcgatgttgcgcgggtgaagaagggaggcatgtggggctttcaacgggctatgattctgctgaatgactatgatggcttctcggagattgctgaggtgaaacatgattttgtttggatctgggttgtgcttcaaggcattccaccgggtatcttgactgaacctacggtcaggttggtgggagggacgattagcgaggttctggaggtggatcgcttggctcttcgtcgtggggaagctcgggatgagtcagaatccgatactgtggtggaggaaggctcgcagcaggctccggggtcggttcacccagccctcgtgtttagggccaactcccagccctttccttccttactttctatcttcaaagttcctaacttgctgaagaagaaacaagtgcaaatcagtcttcttccggagccggtgaccttgcctgggtctaaaggcacgtctgcttctgttccagtcgtgggggtggggcaccctcatacgctcaaagcaagcatataa

Protein Analysis

257

Amino Acids

28.29

Weight (kDa)

8.67

Isoelectric Point (pI)

34.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AccB1I GGYRCC 1 cut(s) 744
AccB7I CCANNNNNTGG 1 cut(s) 232
AccII CGCG 2 cut(s) 270, 280
AccIII TCCGGA 1 cut(s) 679
AciI CCGC 3 cut(s) 27, 158, 280
AclWI GGATC 3 cut(s) 186, 392, 486
AcsI RAATTY 2 cut(s) 107, 242
AcuI CTGAAG 1 cut(s) 668
AfiI CCNNNNNNNGG 3 cut(s) 232, 699, 734
AgeI ACCGGT 1 cut(s) 70
AgsI TTSAA 3 cut(s) 311, 401, 631
AjiI CACGTC 1 cut(s) 714
AjnI CCWGG 3 cut(s) 29, 231, 697
AluBI AGCT 1 cut(s) 506
AluI AGCT 1 cut(s) 506
Alw26I GTCTC 1 cut(s) 196
AlwI GGATC 3 cut(s) 186, 392, 486
Ama87I CYCGRG 1 cut(s) 507
Aor13HI TCCGGA 1 cut(s) 679
AoxI GGCC 1 cut(s) 591
ApeKI GCWGC 3 cut(s) 5, 8, 550
ApoI RAATTY 2 cut(s) 107, 242
AsiGI ACCGGT 1 cut(s) 70
AspLEI GCGC 1 cut(s) 280
AspS9I GGNCC 2 cut(s) 223, 591
AsuC2I CCSGG 2 cut(s) 414, 561
AsuHPI GGTGA 7 cut(s) 74, 248, 250, 295, 376, 563, 700
AsuNHI GCTAGC 1 cut(s) 34
AvaI CYCGRG 1 cut(s) 507
AvaII GGWCC 1 cut(s) 223
AxyI CCTNAGG 1 cut(s) 89
BaeGI GKGCMC 1 cut(s) 747
BaeI ACNNNNGTAYC 2 cut(s) 519, 552
BanI GGYRCC 1 cut(s) 744
BauI CACGAG 1 cut(s) 581
BbsI GAAGAC 1 cut(s) 665
BbvCI CCTCAGC 1 cut(s) 360
BbvI GCAGC 1 cut(s) 562
BccI CCATC 1 cut(s) 335
BciT130I CCWGG 3 cut(s) 31, 233, 699
BcnI CCSGG 2 cut(s) 414, 561
BcoDI GTCTC 1 cut(s) 196
BfaI CTAG 1 cut(s) 35
BisI GCNGC 3 cut(s) 6, 9, 551
BlsI GCNGC 3 cut(s) 7, 10, 552
Bme1390I CCNGG 5 cut(s) 31, 233, 414, 561, 699
Bme18I GGWCC 1 cut(s) 223
BmeT110I CYCGRG 1 cut(s) 507
BmgBI CACGTC 1 cut(s) 714
BmgT120I GGNCC 2 cut(s) 223, 591
BmiI GGNNCC 4 cut(s) 86, 558, 684, 746
BmrFI CCNGG 5 cut(s) 31, 233, 414, 561, 699
BmtI GCTAGC 1 cut(s) 38
BpiI GAAGAC 1 cut(s) 665
BplI GAGNNNNNCTC 2 cut(s) 530, 562
BpmI CTGGAG 2 cut(s) 199, 491
Bpu10I CCTNAGC 1 cut(s) 360
BpuMI CCSGG 2 cut(s) 414, 561
BsaJI CCNNGG 4 cut(s) 231, 232, 560, 698
BsaWI WCCGGW 2 cut(s) 70, 679
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 699, 734
Bse118I RCCGGY 2 cut(s) 70, 685
Bse1I ACTGG 1 cut(s) 728
Bse21I CCTNAGG 1 cut(s) 89
BseAI TCCGGA 1 cut(s) 679
BseBI CCWGG 3 cut(s) 31, 233, 699
BseDI CCNNGG 4 cut(s) 231, 232, 560, 698
BseGI GGATG 1 cut(s) 517
BseLI CCNNNNNNNGG 3 cut(s) 232, 699, 734
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 1 cut(s) 728
BseSI GKGCMC 1 cut(s) 747
BseXI GCAGC 1 cut(s) 562
BseYI CCCAGC 2 cut(s) 574, 600
Bsh1236I CGCG 2 cut(s) 270, 280
BshFI GGCC 1 cut(s) 593
BshNI GGYRCC 1 cut(s) 744
BshTI ACCGGT 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 507
BsiSI CCGG 5 cut(s) 71, 413, 560, 680, 686
BslFI GGGAC 2 cut(s) 226, 466
BslI CCNNNNNNNGG 3 cut(s) 232, 699, 734
BsmAI GTCTC 1 cut(s) 196
BsmFI GGGAC 2 cut(s) 226, 466
BsmI GAATGC 1 cut(s) 405
BsnI GGCC 1 cut(s) 593
BsoBI CYCGRG 1 cut(s) 507
Bsp1286I GDGCHC 1 cut(s) 747
Bsp13I TCCGGA 1 cut(s) 679
Bsp143I GATC 3 cut(s) 191, 384, 478
BspACI CCGC 3 cut(s) 27, 158, 280
BspANI GGCC 1 cut(s) 593
BspCNI CTCAG 1 cut(s) 352
BspEI TCCGGA 1 cut(s) 679
BspFNI CGCG 2 cut(s) 270, 280
BspLI GGNNCC 4 cut(s) 86, 558, 684, 746
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 3 cut(s) 186, 392, 486
BspQI GCTCTTC 1 cut(s) 495
BspT107I GGYRCC 1 cut(s) 744
BsrFI RCCGGY 2 cut(s) 70, 685
BsrI ACTGG 1 cut(s) 728
BssAI RCCGGY 2 cut(s) 70, 685
BssECI CCNNGG 4 cut(s) 231, 232, 560, 698
BssMI GATC 3 cut(s) 191, 384, 478
BssSI CACGAG 1 cut(s) 581
Bst2BI CACGAG 1 cut(s) 581
Bst2UI CCWGG 3 cut(s) 31, 233, 699
Bst4CI ACNGT 3 cut(s) 217, 436, 532
Bst6I CTCTTC 1 cut(s) 495
BstC8I GCNNGC 5 cut(s) 36, 118, 548, 555, 766
BstDEI CTNAG 3 cut(s) 53, 89, 360
BstEII GGTNACC 1 cut(s) 688
BstF5I GGATG 1 cut(s) 517
BstFNI CGCG 2 cut(s) 270, 280
BstHHI GCGC 1 cut(s) 280
BstKTI GATC 3 cut(s) 194, 387, 481
BstMAI GTCTC 1 cut(s) 196
BstMBI GATC 3 cut(s) 191, 384, 478
BstMWI GCNNNNNNNGC 3 cut(s) 14, 35, 303
BstNI CCWGG 3 cut(s) 31, 233, 699
BstNSI RCATGY 1 cut(s) 301
BstPI GGTNACC 1 cut(s) 688
BstSCI CCNGG 5 cut(s) 29, 231, 412, 559, 697
BstSLI GKGCMC 1 cut(s) 747
BstUI CGCG 2 cut(s) 270, 280
BstV1I GCAGC 1 cut(s) 562
BstV2I GAAGAC 1 cut(s) 665
BstX2I RGATCY 2 cut(s) 191, 384
BstYI RGATCY 2 cut(s) 191, 384
Bsu36I CCTNAGG 1 cut(s) 89
BsuRI GGCC 1 cut(s) 593
BtgZI GCGATG 1 cut(s) 285
BtrI CACGTC 1 cut(s) 714
BtsCI GGATG 1 cut(s) 517
Cac8I GCNNGC 5 cut(s) 36, 118, 548, 555, 766
CfoI GCGC 1 cut(s) 280
Cfr10I RCCGGY 2 cut(s) 70, 685
Cfr13I GGNCC 2 cut(s) 223, 591
CspAI ACCGGT 1 cut(s) 70
CviAII CATG 4 cut(s) 22, 196, 298, 371
DdeI CTNAG 3 cut(s) 53, 89, 360
DpnI GATC 3 cut(s) 193, 386, 480
DpnII GATC 3 cut(s) 191, 384, 478
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 495
EarI CTCTTC 1 cut(s) 495
Eco47I GGWCC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 668
Eco81I CCTNAGG 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 507
Eco91I GGTNACC 1 cut(s) 688
EcoO65I GGTNACC 1 cut(s) 688
EcoRII CCWGG 3 cut(s) 29, 231, 697
FaeI CATG 4 cut(s) 25, 199, 301, 374
FaqI GGGAC 2 cut(s) 226, 466
FatI CATG 4 cut(s) 21, 195, 297, 370
FauI CCCGC 1 cut(s) 273
Fnu4HI GCNGC 3 cut(s) 6, 9, 551
FokI GGATG 1 cut(s) 524
Fsp4HI GCNGC 3 cut(s) 6, 9, 551
FspBI CTAG 1 cut(s) 35
GlaI GCGC 1 cut(s) 279
GluI GCNGC 3 cut(s) 6, 9, 551
GsaI CCCAGC 2 cut(s) 578, 604
GsuI CTGGAG 2 cut(s) 199, 491
HaeIII GGCC 1 cut(s) 593
HapII CCGG 5 cut(s) 71, 413, 560, 680, 686
HhaI GCGC 1 cut(s) 280
Hin1II CATG 4 cut(s) 25, 199, 301, 374
Hin6I GCGC 1 cut(s) 278
HinP1I GCGC 1 cut(s) 278
HinfI GANTC 3 cut(s) 322, 515, 521
HpaII CCGG 5 cut(s) 71, 413, 560, 680, 686
HphI GGTGA 7 cut(s) 74, 248, 250, 295, 376, 563, 700
Hpy166II GTNNAC 4 cut(s) 76, 252, 258, 571
Hpy188I TCNGA 3 cut(s) 352, 520, 526
Hpy188III TCNNGA 5 cut(s) 178, 421, 470, 509, 680
Hpy8I GTNNAC 4 cut(s) 76, 252, 258, 571
Hpy99I CGWCG 1 cut(s) 498
HpyAV CCTTC 4 cut(s) 97, 283, 536, 621
HpyCH4III ACNGT 3 cut(s) 217, 436, 532
HpyCH4IV ACGT 2 cut(s) 254, 713
HpyCH4V TGCA 1 cut(s) 664
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 35, 303
HpyF3I CTNAG 3 cut(s) 53, 89, 360
HpySE526I ACGT 2 cut(s) 254, 713
Hsp92II CATG 4 cut(s) 25, 199, 301, 374
HspAI GCGC 1 cut(s) 278
Kpn2I TCCGGA 1 cut(s) 679
Kzo9I GATC 3 cut(s) 191, 384, 478
LguI GCTCTTC 1 cut(s) 495
LmnI GCTCC 2 cut(s) 562, 682
Lsp1109I GCAGC 1 cut(s) 562
MaeI CTAG 1 cut(s) 35
MaeII ACGT 2 cut(s) 254, 713
MaeIII GTNAC 2 cut(s) 236, 688
MalI GATC 3 cut(s) 193, 386, 480
MboI GATC 3 cut(s) 191, 384, 478
MboII GAAGA 8 cut(s) 77, 298, 482, 619, 661, 664, 665, 668
MflI RGATCY 2 cut(s) 191, 384
MhlI GDGCHC 1 cut(s) 747
MluCI AATT 2 cut(s) 107, 242
MlyI GAGTC 1 cut(s) 524
MmeI TCCRAC 1 cut(s) 250
MroI TCCGGA 1 cut(s) 679
MspI CCGG 5 cut(s) 71, 413, 560, 680, 686
MspR9I CCNGG 5 cut(s) 31, 233, 414, 561, 699
Mva1269I GAATGC 1 cut(s) 405
MvaI CCWGG 3 cut(s) 31, 233, 699
MvnI CGCG 2 cut(s) 270, 280
MwoI GCNNNNNNNGC 3 cut(s) 14, 35, 303
NciI CCSGG 2 cut(s) 414, 561
NdeII GATC 3 cut(s) 191, 384, 478
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 4 cut(s) 25, 199, 301, 374
NlaIV GGNNCC 4 cut(s) 86, 558, 684, 746
NmuCI GTSAC 2 cut(s) 236, 688
NspI RCATGY 1 cut(s) 301
PasI CCCWGGG 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 495
PctI GAATGC 1 cut(s) 405
PfeI GAWTC 2 cut(s) 322, 521
PflMI CCANNNNNTGG 1 cut(s) 232
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 3 cut(s) 7, 10, 552
PleI GAGTC 1 cut(s) 523
PpsI GAGTC 1 cut(s) 523
Psp6I CCWGG 3 cut(s) 29, 231, 697
PspEI GGTNACC 1 cut(s) 688
PspFI CCCAGC 2 cut(s) 574, 600
PspGI CCWGG 3 cut(s) 29, 231, 697
PspN4I GGNNCC 4 cut(s) 86, 558, 684, 746
PspPI GGNCC 2 cut(s) 223, 591
PsuI RGATCY 2 cut(s) 191, 384
SapI GCTCTTC 1 cut(s) 495
SatI GCNGC 3 cut(s) 6, 9, 551
Sau3AI GATC 3 cut(s) 191, 384, 478
Sau96I GGNCC 2 cut(s) 223, 591
SchI GAGTC 1 cut(s) 524
ScrFI CCNGG 5 cut(s) 31, 233, 414, 561, 699
SduI GDGCHC 1 cut(s) 747
SinI GGWCC 1 cut(s) 223
Sse9I AATT 2 cut(s) 107, 242
SsiI CCGC 3 cut(s) 27, 158, 280
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 5 cut(s) 29, 231, 412, 559, 697
TaaI ACNGT 3 cut(s) 217, 436, 532
TaiI ACGT 2 cut(s) 257, 716
TasI AATT 2 cut(s) 107, 242
TfiI GAWTC 2 cut(s) 322, 521
TseFI GTSAC 2 cut(s) 236, 688
TseI GCWGC 3 cut(s) 5, 8, 550
Tsp45I GTSAC 2 cut(s) 236, 688
TspDTI ATGAA 1 cut(s) 279
Van91I CCANNNNNTGG 1 cut(s) 232
VpaK11BI GGWCC 1 cut(s) 223
XapI RAATTY 2 cut(s) 107, 242
XceI RCATGY 1 cut(s) 301
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.