Rorug06G0167000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000172
Physical Location & Seq
Forward (+)
24380876 .. 24382806
1931 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0167000.1

Sequence Viewer

Length: 882 bp
ATGCAAAGTTTGGTTCAGTTTTACTTGTTTCTTATTTGTTTTTCTGCTGTTCTTGAGTTTGTTCAAAATTTTCTGGGATTCTTCGGGATGGATTTTGTGTTTGGGGTTTTGTTGTACGGTCGTTTCTCGCCGCTTTTTGTGTCAGGGTTGTCTCTCATGTTCGGGTTTGGGTTGTTATACAATTACAACTATTTGATTAAATTCGTATGTGACAATAGAGCGAAAGCCAGTGACTTTAGTAATGGATTTTGCTCAAACTGCGGTTCTCATGAAGTTTGTGCTTCAAAGGCCGTGTCTTGCAAATCTGAACCACTGAAATCATTGGAGAATTTACAGTCATTAAATACAGATGGTTTTCTGTTAACCAAAATTGTCAAGGCAGAAGATGCAATTGAAGGAAAAGATGATAATGATGGTGACAATGATGATGAGAATGTTTGTTGTAAGGAGGATGAAGTGTTTGATGTTCTGTCATTGAGGAAATTGGTAAAGATTGAGCGCCGGCGGGGGGATGAGGCACGTGCAGAACTCGAGAAGGAAAGGATGGCTGCTGCATCTGCAGCTGAGGAAGCAATGACCATGATCTTGCGTCTTCAGAACGAGAAGAGTTCTACTGAAATCCAAGCCAATCATTATCGCCAGATAGCTGAGCAGAAGCAGCAATATGATGAAGCAGTGATTCAGTCCTTGCAGTGGATTATAATGAAACACGAATCCGAGAGGAGTCAATTGGAAGAGCAACTGAGGCTGTGCAGGCAAACGTGCAATGGTCAGTCTGAGGAAGGTGATCCAAGTAAAAACCTGTTCGATTCCACCACATTGGAAGATGATGGCCTCGAAGATGTCTTTGATGCACATTGTAGGTATTTTGAATCCGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

293

Amino Acids

33.38

Weight (kDa)

4.62

Isoelectric Point (pI)

50.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zein-binding PF04576 158 - 248 1.4e-28 Zein-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 701
AciI CCGC 3 cut(s) 131, 261, 505
AclWI GGATC 1 cut(s) 782
AcsI RAATTY 3 cut(s) 67, 200, 328
AcuI CTGAAG 1 cut(s) 578
AcvI CACGTG 1 cut(s) 521
AfaI GTAC 1 cut(s) 116
AfiI CCNNNNNNNGG 2 cut(s) 508, 693
AgsI TTSAA 4 cut(s) 65, 285, 395, 872
AluBI AGCT 2 cut(s) 563, 647
AluI AGCT 2 cut(s) 563, 647
Alw26I GTCTC 1 cut(s) 156
AlwI GGATC 1 cut(s) 782
Ama87I CYCGRG 1 cut(s) 530
AoxI GGCC 2 cut(s) 288, 832
ApeKI GCWGC 4 cut(s) 548, 551, 560, 658
ApoI RAATTY 3 cut(s) 67, 200, 328
ArsI GACNNNNNNTTYG 2 cut(s) 278, 310
AspLEI GCGC 1 cut(s) 501
AsuHPI GGTGA 2 cut(s) 428, 797
AvaI CYCGRG 1 cut(s) 530
BbrPI CACGTG 1 cut(s) 521
BbsI GAAGAC 1 cut(s) 584
BbvCI CCTCAGC 1 cut(s) 564
BbvI GCAGC 4 cut(s) 535, 538, 572, 670
BccI CCATC 5 cut(s) 82, 344, 407, 538, 824
BceAI ACGGC 1 cut(s) 275
BcoDI GTCTC 1 cut(s) 156
BfmI CTRYAG 1 cut(s) 558
BfoI RGCGCY 1 cut(s) 502
BisI GCNGC 5 cut(s) 131, 549, 552, 561, 659
BlpI GCTNAGC 1 cut(s) 648
BlsI GCNGC 5 cut(s) 132, 550, 553, 562, 660
BmeT110I CYCGRG 1 cut(s) 530
BmsI GCATC 3 cut(s) 376, 563, 841
BpiI GAAGAC 1 cut(s) 584
Bpu10I CCTNAGC 1 cut(s) 564
Bpu1102I GCTNAGC 1 cut(s) 648
BpuEI CTTGAG 1 cut(s) 74
BsaAI YACGTR 1 cut(s) 521
Bsc4I CCNNNNNNNGG 2 cut(s) 508, 693
Bse118I RCCGGY 1 cut(s) 501
Bse1I ACTGG 1 cut(s) 228
Bse3DI GCAATG 2 cut(s) 579, 772
BseGI GGATG 4 cut(s) 93, 457, 517, 549
BseLI CCNNNNNNNGG 2 cut(s) 508, 693
BseMI GCAATG 2 cut(s) 579, 772
BseMII CTCAG 4 cut(s) 555, 639, 734, 768
BseNI ACTGG 1 cut(s) 228
BseRI GAGGAG 1 cut(s) 736
BseXI GCAGC 4 cut(s) 535, 538, 572, 670
BsgI GTGCAG 2 cut(s) 543, 772
Bsh1285I CGRYCG 1 cut(s) 121
BshFI GGCC 2 cut(s) 290, 834
BsiEI CGRYCG 1 cut(s) 121
BsiHKCI CYCGRG 1 cut(s) 530
BsiSI CCGG 1 cut(s) 502
BslI CCNNNNNNNGG 2 cut(s) 508, 693
BsmAI GTCTC 1 cut(s) 156
BsnI GGCC 2 cut(s) 290, 834
BsoBI CYCGRG 1 cut(s) 530
Bsp143I GATC 2 cut(s) 582, 787
Bsp1720I GCTNAGC 1 cut(s) 648
BspACI CCGC 3 cut(s) 131, 261, 505
BspANI GGCC 2 cut(s) 290, 834
BspCNI CTCAG 4 cut(s) 556, 640, 735, 769
BspHI TCATGA 1 cut(s) 268
BspMAI CTGCAG 1 cut(s) 562
BspPI GGATC 1 cut(s) 782
BspQI GCTCTTC 1 cut(s) 729
BsrDI GCAATG 2 cut(s) 579, 772
BsrFI RCCGGY 1 cut(s) 501
BsrI ACTGG 1 cut(s) 228
BssAI RCCGGY 1 cut(s) 501
BssMI GATC 2 cut(s) 582, 787
Bst4CI ACNGT 2 cut(s) 119, 336
Bst6I CTCTTC 2 cut(s) 599, 729
BstAPI GCANNNNNTGC 1 cut(s) 386
BstBAI YACGTR 1 cut(s) 521
BstC8I GCNNGC 2 cut(s) 503, 755
BstDEI CTNAG 4 cut(s) 564, 648, 743, 777
BstF5I GGATG 4 cut(s) 93, 457, 517, 549
BstH2I RGCGCY 1 cut(s) 502
BstHHI GCGC 1 cut(s) 501
BstKTI GATC 2 cut(s) 585, 790
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 2 cut(s) 582, 787
BstMCI CGRYCG 1 cut(s) 121
BstMWI GCNNNNNNNGC 9 cut(s) 258, 287, 386, 557, 560, 569, 658, 745, 754
BstSFI CTRYAG 1 cut(s) 558
BstV1I GCAGC 4 cut(s) 535, 538, 572, 670
BstV2I GAAGAC 1 cut(s) 584
BstXI CCANNNNNNTGG 1 cut(s) 820
BsuRI GGCC 2 cut(s) 290, 834
BtsCI GGATG 4 cut(s) 93, 457, 517, 549
BtsI GCAGTG 2 cut(s) 681, 698
BtsIMutI CAGTG 4 cut(s) 235, 311, 681, 698
Cac8I GCNNGC 2 cut(s) 503, 755
CciI TCATGA 1 cut(s) 268
CfoI GCGC 1 cut(s) 501
Cfr10I RCCGGY 1 cut(s) 501
CseI GACGC 1 cut(s) 578
Csp6I GTAC 1 cut(s) 115
CviAII CATG 3 cut(s) 157, 269, 580
CviJI RGCY 8 cut(s) 227, 290, 548, 563, 626, 647, 748, 834
CviKI_1 RGCY 8 cut(s) 227, 290, 548, 563, 626, 647, 748, 834
CviQI GTAC 1 cut(s) 115
DdeI CTNAG 4 cut(s) 564, 648, 743, 777
DpnI GATC 2 cut(s) 584, 789
DpnII GATC 2 cut(s) 582, 787
Eam1104I CTCTTC 2 cut(s) 599, 729
EarI CTCTTC 2 cut(s) 599, 729
Eco57I CTGAAG 1 cut(s) 578
Eco72I CACGTG 1 cut(s) 521
Eco88I CYCGRG 1 cut(s) 530
FaeI CATG 3 cut(s) 160, 272, 583
FaiI YATR 7 cut(s) 158, 178, 208, 270, 581, 666, 701
FatI CATG 3 cut(s) 156, 268, 579
FauI CCCGC 1 cut(s) 498
Fnu4HI GCNGC 5 cut(s) 131, 549, 552, 561, 659
FokI GGATG 4 cut(s) 100, 464, 524, 556
Fsp4HI GCNGC 5 cut(s) 131, 549, 552, 561, 659
GlaI GCGC 1 cut(s) 500
GluI GCNGC 5 cut(s) 131, 549, 552, 561, 659
HaeII RGCGCY 1 cut(s) 502
HaeIII GGCC 2 cut(s) 290, 834
HapII CCGG 1 cut(s) 502
HgaI GACGC 1 cut(s) 578
HhaI GCGC 1 cut(s) 501
Hin1II CATG 3 cut(s) 160, 272, 583
Hin6I GCGC 1 cut(s) 499
HinP1I GCGC 1 cut(s) 499
HincII GTYRAC 1 cut(s) 363
HindII GTYRAC 1 cut(s) 363
HinfI GANTC 6 cut(s) 78, 679, 713, 724, 809, 872
HpaI GTTAAC 1 cut(s) 363
HpaII CCGG 1 cut(s) 502
HphI GGTGA 2 cut(s) 428, 797
Hpy166II GTNNAC 1 cut(s) 363
Hpy188I TCNGA 5 cut(s) 307, 597, 718, 778, 877
Hpy188III TCNNGA 4 cut(s) 53, 85, 269, 532
Hpy8I GTNNAC 1 cut(s) 363
HpyAV CCTTC 3 cut(s) 389, 529, 776
HpyCH4III ACNGT 2 cut(s) 119, 336
HpyCH4IV ACGT 2 cut(s) 520, 761
HpyF10VI GCNNNNNNNGC 9 cut(s) 258, 287, 386, 557, 560, 569, 658, 745, 754
HpyF3I CTNAG 4 cut(s) 564, 648, 743, 777
HpySE526I ACGT 2 cut(s) 520, 761
Hsp92II CATG 3 cut(s) 160, 272, 583
HspAI GCGC 1 cut(s) 499
KroI GCCGGC 1 cut(s) 501
KroNI GCCGGC 1 cut(s) 503
KspAI GTTAAC 1 cut(s) 363
Kzo9I GATC 2 cut(s) 582, 787
LguI GCTCTTC 1 cut(s) 729
LpnPI CCDG 7 cut(s) 59, 129, 241, 515, 653, 739, 815
Lsp1109I GCAGC 4 cut(s) 535, 538, 572, 670
LweI GCATC 3 cut(s) 376, 563, 841
MaeII ACGT 2 cut(s) 520, 761
MaeIII GTNAC 3 cut(s) 209, 230, 416
MalI GATC 2 cut(s) 584, 789
MboI GATC 2 cut(s) 582, 787
MboII GAAGA 7 cut(s) 73, 395, 584, 616, 746, 836, 851
MfeI CAATTG 2 cut(s) 390, 728
MluCI AATT 8 cut(s) 67, 181, 200, 328, 369, 390, 482, 728
MlyI GAGTC 1 cut(s) 733
MnlI CCTC 8 cut(s) 442, 471, 508, 559, 714, 738, 772, 845
MreI CGCCGGCG 1 cut(s) 501
MroNI GCCGGC 1 cut(s) 501
MseI TTAA 3 cut(s) 198, 341, 362
MspA1I CMGCKG 1 cut(s) 563
MspI CCGG 1 cut(s) 502
MunI CAATTG 2 cut(s) 390, 728
MwoI GCNNNNNNNGC 9 cut(s) 258, 287, 386, 557, 560, 569, 658, 745, 754
NaeI GCCGGC 1 cut(s) 503
NdeII GATC 2 cut(s) 582, 787
NgoMIV GCCGGC 1 cut(s) 501
NlaIII CATG 3 cut(s) 160, 272, 583
NmuCI GTSAC 3 cut(s) 209, 230, 416
PaeR7I CTCGAG 1 cut(s) 530
PagI TCATGA 1 cut(s) 268
PciSI GCTCTTC 1 cut(s) 729
PdiI GCCGGC 1 cut(s) 503
PfeI GAWTC 5 cut(s) 78, 679, 713, 809, 872
PkrI GCNGC 5 cut(s) 132, 550, 553, 562, 660
PleI GAGTC 1 cut(s) 732
PmaCI CACGTG 1 cut(s) 521
PmlI CACGTG 1 cut(s) 521
PpsI GAGTC 1 cut(s) 732
Ppu21I YACGTR 1 cut(s) 521
PsiI TTATAA 1 cut(s) 701
PspCI CACGTG 1 cut(s) 521
PstI CTGCAG 1 cut(s) 562
PvuII CAGCTG 1 cut(s) 563
RsaI GTAC 1 cut(s) 116
RsaNI GTAC 1 cut(s) 115
SapI GCTCTTC 1 cut(s) 729
SaqAI TTAA 3 cut(s) 198, 341, 362
SatI GCNGC 5 cut(s) 131, 549, 552, 561, 659
Sau3AI GATC 2 cut(s) 582, 787
SchI GAGTC 1 cut(s) 733
SetI ASST 7 cut(s) 523, 565, 649, 764, 787, 804, 866
SfaNI GCATC 3 cut(s) 376, 563, 841
SfcI CTRYAG 1 cut(s) 558
Sfr274I CTCGAG 1 cut(s) 530
SgrAI CRCCGGYG 1 cut(s) 501
SlaI CTCGAG 1 cut(s) 530
SmlI CTYRAG 2 cut(s) 53, 530
SmoI CTYRAG 2 cut(s) 53, 530
Sse9I AATT 8 cut(s) 67, 181, 200, 328, 369, 390, 482, 728
SsiI CCGC 3 cut(s) 131, 261, 505
TaaI ACNGT 2 cut(s) 119, 336
TaiI ACGT 2 cut(s) 523, 764
TaqI TCGA 3 cut(s) 531, 807, 837
TasI AATT 8 cut(s) 67, 181, 200, 328, 369, 390, 482, 728
TauI GCSGC 1 cut(s) 133
TfiI GAWTC 5 cut(s) 78, 679, 713, 809, 872
Tru1I TTAA 3 cut(s) 198, 341, 362
Tru9I TTAA 3 cut(s) 198, 341, 362
TscAI CASTG 4 cut(s) 235, 318, 681, 698
TseFI GTSAC 3 cut(s) 209, 230, 416
TseI GCWGC 4 cut(s) 548, 551, 560, 658
Tsp45I GTSAC 3 cut(s) 209, 230, 416
TspDTI ATGAA 4 cut(s) 285, 468, 684, 719
TspRI CASTG 4 cut(s) 235, 318, 681, 698
XapI RAATTY 3 cut(s) 67, 200, 328
XhoI CTCGAG 1 cut(s) 530
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.