Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005369.1

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

58043 .. 59097

Gene Structure 1055 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005369.1_g000013.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

atgtggaggctcacggggacggtggagatgcaaccccatgcagaccgcttcttgtttacgttcactcttgaaagtgatattgcgagggtgaagaagggtggaccatggggtttccagcgtgccatggtgctgctcaacgattatgacggacggccttgcgtcaaggaactgcacgcgcgcatttggttcttcccatcaatgagtcgggtgcgaagaccaagggaagaagagttaccggctgaggataagagagtgaagcatagtctggatctagttccggtaggtcttcaaccggaaaaccttgggtttgatgtttcttctgagggtttggttgaagtacctgtttcctctgccccaaaggtgtataagaagagaggaaggccccgtgggaagagaaatactcctaggccttccccggcggcctctgcttatgctggctccgacttaggaatgccagttgcttctgaaggtggatctggaggtctccagatggtggttgcatcggagctagagtttgtctcccgttctggctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

177

Amino Acids

19.6

Weight (kDa)

9.55

Isoelectric Point (pI)

63.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	493
AccII	CGCG	2 cut(s)	176, 178
AciI	CCGC	2 cut(s)	46, 419
AclWI	GGATC	2 cut(s)	276, 481
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	1 cut(s)	339
AfiI	CCNNNNNNNGG	1 cut(s)	493
AgsI	TTSAA	3 cut(s)	71, 290, 335
AluBI	AGCT	1 cut(s)	508
AluI	AGCT	1 cut(s)	508
Alw26I	GTCTC	2 cut(s)	488, 523
AlwI	GGATC	2 cut(s)	276, 481
AoxI	GGCC	4 cut(s)	152, 380, 407, 420
ApeKI	GCWGC	1 cut(s)	130
AspA2I	CCTAGG	1 cut(s)	404
AspLEI	GCGC	2 cut(s)	178, 180
AspS9I	GGNCC	2 cut(s)	101, 381
AsuC2I	CCSGG	1 cut(s)	416
AsuHPI	GGTGA	1 cut(s)	100
AvaII	GGWCC	1 cut(s)	101
AvrII	CCTAGG	1 cut(s)	404
BarI	GAAGNNNNNNTAC	2 cut(s)	216, 248
BbsI	GAAGAC	2 cut(s)	220, 278
BbvCI	CCTCAGC	1 cut(s)	240
BbvI	GCAGC	1 cut(s)	117
BccI	CCATC	2 cut(s)	202, 484
BceAI	ACGGC	1 cut(s)	167
BcnI	CCSGG	1 cut(s)	416
BcoDI	GTCTC	2 cut(s)	488, 523
BfaI	CTAG	3 cut(s)	272, 405, 509
BisI	GCNGC	2 cut(s)	131, 420
BlnI	CCTAGG	1 cut(s)	404
BlsI	GCNGC	2 cut(s)	132, 421
Bme1390I	CCNGG	1 cut(s)	416
Bme18I	GGWCC	1 cut(s)	101
BmgT120I	GGNCC	2 cut(s)	101, 381
BmiI	GGNNCC	2 cut(s)	383, 439
BmrFI	CCNGG	1 cut(s)	416
BmsI	GCATC	2 cut(s)	18, 509
BpiI	GAAGAC	2 cut(s)	220, 278
BplI	GAGNNNNNCTC	3 cut(s)	385, 417, 503
BpmI	CTGGAG	2 cut(s)	470, 498
Bpu10I	CCTNAGC	1 cut(s)	240
BpuMI	CCSGG	1 cut(s)	416
BsaI	GGTCTC	1 cut(s)	488
BsaJI	CCNNGG	7 cut(s)	104, 123, 218, 301, 385, 404, 414
BsaWI	WCCGGW	2 cut(s)	277, 292
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	1 cut(s)	493
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	455
BseDI	CCNNGG	7 cut(s)	104, 123, 218, 301, 385, 404, 414
BseLI	CCNNNNNNNGG	1 cut(s)	493
BseMII	CTCAG	2 cut(s)	231, 312
BseNI	ACTGG	1 cut(s)	455
BsePI	GCGCGC	1 cut(s)	176
BseXI	GCAGC	1 cut(s)	117
BsgI	GTGCAG	1 cut(s)	155
Bsh1236I	CGCG	2 cut(s)	176, 178
BshFI	GGCC	4 cut(s)	154, 382, 409, 422
BsiSI	CCGG	4 cut(s)	236, 278, 293, 416
BslFI	GGGAC	1 cut(s)	31
BslI	CCNNNNNNNGG	1 cut(s)	493
BsmAI	GTCTC	2 cut(s)	488, 523
BsmFI	GGGAC	1 cut(s)	31
BsmI	GAATGC	1 cut(s)	456
BsnI	GGCC	4 cut(s)	154, 382, 409, 422
Bso31I	GGTCTC	1 cut(s)	488
Bsp143I	GATC	2 cut(s)	268, 473
Bsp19I	CCATGG	2 cut(s)	104, 123
BspACI	CCGC	2 cut(s)	46, 419
BspANI	GGCC	4 cut(s)	154, 382, 409, 422
BspCNI	CTCAG	2 cut(s)	232, 313
BspFNI	CGCG	2 cut(s)	176, 178
BspLI	GGNNCC	2 cut(s)	383, 439
BspPI	GGATC	2 cut(s)	276, 481
BspTNI	GGTCTC	1 cut(s)	488
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	455
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	7 cut(s)	104, 123, 218, 301, 385, 404, 414
BssHII	GCGCGC	1 cut(s)	176
BssMI	GATC	2 cut(s)	268, 473
BssT1I	CCWWGG	5 cut(s)	104, 123, 218, 301, 404
Bst4CI	ACNGT	1 cut(s)	22
Bst6I	CTCTTC	3 cut(s)	222, 365, 386
BstC8I	GCNNGC	4 cut(s)	120, 174, 178, 436
BstDEI	CTNAG	3 cut(s)	240, 321, 445
BstDSI	CCRYGG	3 cut(s)	104, 123, 385
BstFNI	CGCG	2 cut(s)	176, 178
BstHHI	GCGC	2 cut(s)	178, 180
BstKTI	GATC	2 cut(s)	271, 476
BstMAI	GTCTC	2 cut(s)	488, 523
BstMBI	GATC	2 cut(s)	268, 473
BstMWI	GCNNNNNNNGC	1 cut(s)	425
BstSCI	CCNGG	1 cut(s)	414
BstUI	CGCG	2 cut(s)	176, 178
BstV1I	GCAGC	1 cut(s)	117
BstV2I	GAAGAC	2 cut(s)	220, 278
BstX2I	RGATCY	2 cut(s)	268, 473
BstYI	RGATCY	2 cut(s)	268, 473
BsuRI	GGCC	4 cut(s)	154, 382, 409, 422
BtgI	CCRYGG	3 cut(s)	104, 123, 385
Cac8I	GCNNGC	4 cut(s)	120, 174, 178, 436
CfoI	GCGC	2 cut(s)	178, 180
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	2 cut(s)	101, 381
CseI	GACGC	1 cut(s)	148
Csp6I	GTAC	1 cut(s)	338
CviAII	CATG	3 cut(s)	38, 105, 124
CviJI	RGCY	9 cut(s)	10, 154, 239, 382, 409, 422, 438, 508, 531
CviKI_1	RGCY	9 cut(s)	10, 154, 239, 382, 409, 422, 438, 508, 531
CviQI	GTAC	1 cut(s)	338
DdeI	CTNAG	3 cut(s)	240, 321, 445
DpnI	GATC	2 cut(s)	270, 475
DpnII	GATC	2 cut(s)	268, 473
Eam1104I	CTCTTC	3 cut(s)	222, 365, 386
EarI	CTCTTC	3 cut(s)	222, 365, 386
Eco130I	CCWWGG	5 cut(s)	104, 123, 218, 301, 404
Eco147I	AGGCCT	1 cut(s)	409
Eco31I	GGTCTC	1 cut(s)	488
Eco47I	GGWCC	1 cut(s)	101
Eco57I	CTGAAG	1 cut(s)	486
EcoO109I	RGGNCCY	1 cut(s)	381
EcoT14I	CCWWGG	5 cut(s)	104, 123, 218, 301, 404
ErhI	CCWWGG	5 cut(s)	104, 123, 218, 301, 404
FaeI	CATG	3 cut(s)	41, 108, 127
FaiI	YATR	7 cut(s)	39, 106, 125, 144, 261, 366, 432
FaqI	GGGAC	1 cut(s)	31
FatI	CATG	3 cut(s)	37, 104, 123
Fnu4HI	GCNGC	2 cut(s)	131, 420
Fsp4HI	GCNGC	2 cut(s)	131, 420
FspBI	CTAG	3 cut(s)	272, 405, 509
GlaI	GCGC	2 cut(s)	177, 179
GluI	GCNGC	2 cut(s)	131, 420
GsuI	CTGGAG	2 cut(s)	470, 498
HaeIII	GGCC	4 cut(s)	154, 382, 409, 422
HapII	CCGG	4 cut(s)	236, 278, 293, 416
HgaI	GACGC	1 cut(s)	148
HhaI	GCGC	2 cut(s)	178, 180
Hin1II	CATG	3 cut(s)	41, 108, 127
Hin6I	GCGC	2 cut(s)	176, 178
HinP1I	GCGC	2 cut(s)	176, 178
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	4 cut(s)	236, 278, 293, 416
HphI	GGTGA	1 cut(s)	100
Hpy166II	GTNNAC	3 cut(s)	57, 63, 101
Hpy188I	TCNGA	4 cut(s)	322, 442, 466, 505
Hpy188III	TCNNGA	4 cut(s)	68, 266, 477, 487
Hpy8I	GTNNAC	3 cut(s)	57, 63, 101
HpyAV	CCTTC	4 cut(s)	88, 372, 420, 461
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4IV	ACGT	1 cut(s)	59
HpyCH4V	TGCA	4 cut(s)	31, 41, 172, 500
HpyF10VI	GCNNNNNNNGC	1 cut(s)	425
HpyF3I	CTNAG	3 cut(s)	240, 321, 445
HpySE526I	ACGT	1 cut(s)	59
Hsp92II	CATG	3 cut(s)	41, 108, 127
HspAI	GCGC	2 cut(s)	176, 178
Kzo9I	GATC	2 cut(s)	268, 473
LmnI	GCTCC	2 cut(s)	443, 505
Lsp1109I	GCAGC	1 cut(s)	117
LweI	GCATC	2 cut(s)	18, 509
MaeI	CTAG	3 cut(s)	272, 405, 509
MaeII	ACGT	1 cut(s)	59
MaeIII	GTNAC	1 cut(s)	231
MalI	GATC	2 cut(s)	270, 475
MboI	GATC	2 cut(s)	268, 473
MboII	GAAGA	9 cut(s)	103, 181, 225, 236, 239, 278, 309, 382, 403
MflI	RGATCY	2 cut(s)	268, 473
MlyI	GAGTC	1 cut(s)	211
MmeI	TCCRAC	1 cut(s)	465
MnlI	CCTC	7 cut(s)	78, 235, 316, 358, 368, 433, 473
MspI	CCGG	4 cut(s)	236, 278, 293, 416
MspR9I	CCNGG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	456
MvnI	CGCG	2 cut(s)	176, 178
MwoI	GCNNNNNNNGC	1 cut(s)	425
NciI	CCSGG	1 cut(s)	416
NcoI	CCATGG	2 cut(s)	104, 123
NdeII	GATC	2 cut(s)	268, 473
NlaIII	CATG	3 cut(s)	41, 108, 127
NlaIV	GGNNCC	2 cut(s)	383, 439
PauI	GCGCGC	1 cut(s)	176
PceI	AGGCCT	1 cut(s)	409
PctI	GAATGC	1 cut(s)	456
PflMI	CCANNNNNTGG	1 cut(s)	493
PkrI	GCNGC	2 cut(s)	132, 421
PleI	GAGTC	1 cut(s)	210
PpsI	GAGTC	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	383, 439
PspPI	GGNCC	2 cut(s)	101, 381
PsuI	RGATCY	2 cut(s)	268, 473
PteI	GCGCGC	1 cut(s)	176
RsaI	GTAC	1 cut(s)	339
RsaNI	GTAC	1 cut(s)	338
SatI	GCNGC	2 cut(s)	131, 420
Sau3AI	GATC	2 cut(s)	268, 473
Sau96I	GGNCC	2 cut(s)	101, 381
SchI	GAGTC	1 cut(s)	211
ScrFI	CCNGG	1 cut(s)	416
SetI	ASST	8 cut(s)	62, 286, 303, 343, 363, 472, 484, 510
SfaNI	GCATC	2 cut(s)	18, 509
SinI	GGWCC	1 cut(s)	101
SseBI	AGGCCT	1 cut(s)	409
SsiI	CCGC	2 cut(s)	46, 419
SspMI	CTAG	3 cut(s)	272, 405, 509
StuI	AGGCCT	1 cut(s)	409
StyD4I	CCNGG	1 cut(s)	414
StyI	CCWWGG	5 cut(s)	104, 123, 218, 301, 404
TaaI	ACNGT	1 cut(s)	22
TaiI	ACGT	1 cut(s)	62
TauI	GCSGC	1 cut(s)	422
TseI	GCWGC	1 cut(s)	130
TspGWI	ACGGA	1 cut(s)	162
Van91I	CCANNNNNTGG	1 cut(s)	493
VpaK11BI	GGWCC	1 cut(s)	101
XmaJI	CCTAGG	1 cut(s)	404
XspI	CTAG	3 cut(s)	272, 405, 509

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.