Rmu_sc0005607.1_g000023

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005607.1
OG0000172
Physical Location & Seq
Reverse (-)
115746 .. 116960
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005607.1_g000023.1.cds

Sequence Viewer

Length: 1215 bp
atggcagcagctattgcttccatgacagccaggctagcgaccaagttgtcgctcagagagggtgaggaaccggttgacctggaaaaccttagggttccggggaaggaatttctcgctagccgtttctacttggtggggaaactcaacacttgtagggcggtggttttggattcttttaggagcgctgtgcgttcaatgtggagattgacggggactgtggaggttcaaccatgcgaggatcgttttctgtttacgttcactcttgaacgtgatgtcgcccgggtgaagaagggaggcccttggagttttcagcgggctatgcttttgttgaatgactacgatggcttttcagtgattgatccggtgaagcttgactttgtttggatttgggttgggatccgtggccttccaccgggtatcttgacggaacccattgtccggttggtgggcggaacgatcggtgaggttttggaggttgatcaaccggctatccgacgtggtgatgctccggttcggattactttggccatcaatgatccggtgcatttggatcgccgtgttcgggtttcgccctctgatgttctcactttgaggtttcaatatgagcggctattggggaggtgcagaatgtgtactttcttgaaccacggaggacagaggtgttcaagggaggaggtggaggcgactgacactgtggtggacgatggttcgcagcaggttctgaggctggctcttccagggctcgtgtttagggctaattcccagccatctctttccttgccttcgaatttcaaggtcctaactctgttgaagaagaaaccagtgcagattcgtcctctcccggaggtggaatcttcgcctgggtctgaagatacccctgctcttgaccctgtggttgggatgcgtcgccctagggaagaggaggatgaggatggtggaaaacgagctaaacatagcttagcattggttcagggcattctgcaaccggagaacctcgggctagaattctcatatgagggtttggtggaggtgaaggtaacgtcgcctcccaaagtgtacaagaagaagggcaggcctcgaggacatagaaataaggtcaagaaggcgatgtctgtgagtgagggttcggggtccaatgtctttcctgaggatggcgttggtaatgcgcctggacttgagggagcgacgactccgccagattgccgggctgtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

404

Amino Acids

44.61

Weight (kDa)

8.96

Isoelectric Point (pI)

44.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AbsI CCTCGAGG 1 cut(s) 1077
Acc36I ACCTGC 1 cut(s) 706
AccBSI CCGCTC 1 cut(s) 607
AciI CCGC 5 cut(s) 158, 313, 450, 607, 1193
AclWI GGATC 6 cut(s) 246, 353, 391, 404, 530, 558
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 3 cut(s) 107, 787, 1004
AcuI CTGAAG 1 cut(s) 888
AfaI GTAC 2 cut(s) 634, 1058
AfeI AGCGCT 1 cut(s) 184
AfiI CCNNNNNNNGG 7 cut(s) 412, 438, 445, 562, 847, 896, 1151
AgeI ACCGGT 1 cut(s) 70
AgsI TTSAA 9 cut(s) 195, 227, 266, 331, 599, 643, 666, 793, 811
AjiI CACGTC 1 cut(s) 497
AjnI CCWGG 5 cut(s) 29, 78, 736, 859, 1168
AleI CACNNNNGTG 1 cut(s) 695
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 4 cut(s) 11, 370, 947, 957
AluI AGCT 4 cut(s) 11, 370, 947, 957
AlwI GGATC 6 cut(s) 246, 353, 391, 404, 530, 558
AlwNI CAGNNNCTG 1 cut(s) 721
Ama87I CYCGRG 3 cut(s) 279, 995, 1077
Aor51HI AGCGCT 1 cut(s) 184
AoxI GGCC 4 cut(s) 295, 403, 525, 1073
ApeKI GCWGC 3 cut(s) 5, 8, 712
ApoI RAATTY 3 cut(s) 107, 787, 1004
AsiGI ACCGGT 1 cut(s) 70
AspA2I CCTAGG 1 cut(s) 911
AspLEI GCGC 2 cut(s) 185, 1168
AspS9I GGNCC 3 cut(s) 296, 796, 1131
AsuC2I CCSGG 6 cut(s) 99, 280, 281, 414, 842, 1205
AsuHPI GGTGA 6 cut(s) 74, 295, 376, 473, 512, 1042
AsuII TTCGAA 1 cut(s) 785
AsuNHI GCTAGC 2 cut(s) 34, 116
AvaI CYCGRG 3 cut(s) 279, 995, 1077
AvaII GGWCC 2 cut(s) 796, 1131
AvrII CCTAGG 1 cut(s) 911
AxyI CCTNAGG 2 cut(s) 89, 1146
BalI TGGCCA 1 cut(s) 527
BamHI GGATCC 1 cut(s) 396
BanII GRGCYC 1 cut(s) 744
BauI CACGAG 1 cut(s) 743
BbvI GCAGC 3 cut(s) 17, 20, 724
BccI CCATC 6 cut(s) 335, 536, 698, 775, 926, 1145
BceAI ACGGC 2 cut(s) 105, 540
BcgI CGANNNNNNTGC 2 cut(s) 533, 567
BciT130I CCWGG 5 cut(s) 31, 80, 738, 861, 1170
BclI TGATCA 1 cut(s) 478
BcnI CCSGG 6 cut(s) 99, 280, 281, 414, 842, 1205
BfaI CTAG 4 cut(s) 35, 117, 912, 1001
BfoI RGCGCY 1 cut(s) 186
BfuAI ACCTGC 1 cut(s) 706
BisI GCNGC 4 cut(s) 6, 9, 608, 713
BlnI CCTAGG 1 cut(s) 911
BlpI GCTNAGC 1 cut(s) 958
BlsI GCNGC 4 cut(s) 7, 10, 609, 714
Bme18I GGWCC 2 cut(s) 796, 1131
BmeT110I CYCGRG 3 cut(s) 279, 995, 1077
BmgBI CACGTC 1 cut(s) 497
BmgT120I GGNCC 3 cut(s) 296, 796, 1131
BmiI GGNNCC 5 cut(s) 69, 96, 398, 429, 1132
BmsI GCATC 2 cut(s) 493, 891
BmtI GCTAGC 2 cut(s) 38, 120
BplI GAGNNNNNCTC 2 cut(s) 715, 747
Bpu1102I GCTNAGC 1 cut(s) 958
Bpu14I TTCGAA 1 cut(s) 785
BpuEI CTTGAG 1 cut(s) 1196
BpuMI CCSGG 6 cut(s) 99, 280, 281, 414, 842, 1205
BsaJI CCNNGG 9 cut(s) 98, 279, 299, 400, 646, 737, 860, 911, 994
BsaWI WCCGGW 6 cut(s) 70, 361, 438, 508, 538, 985
BsaXI ACNNNNNCTCC 2 cut(s) 1030, 1060
Bsc4I CCNNNNNNNGG 7 cut(s) 412, 438, 445, 562, 847, 896, 1151
Bse118I RCCGGY 2 cut(s) 70, 484
Bse1I ACTGG 1 cut(s) 821
Bse21I CCTNAGG 2 cut(s) 89, 1146
BseBI CCWGG 5 cut(s) 31, 80, 738, 861, 1170
BseDI CCNNGG 9 cut(s) 98, 279, 299, 400, 646, 737, 860, 911, 994
BseGI GGATG 4 cut(s) 906, 931, 937, 1156
BseLI CCNNNNNNNGG 7 cut(s) 412, 438, 445, 562, 847, 896, 1151
BseMII CTCAG 3 cut(s) 67, 713, 1137
BseNI ACTGG 1 cut(s) 821
BseRI GAGGAG 2 cut(s) 686, 935
BseXI GCAGC 3 cut(s) 17, 20, 724
BseYI CCCAGC 1 cut(s) 762
BsgI GTGCAG 2 cut(s) 643, 845
Bsh1285I CGRYCG 1 cut(s) 459
BshFI GGCC 4 cut(s) 297, 405, 527, 1075
BshTI ACCGGT 1 cut(s) 70
BsiEI CGRYCG 1 cut(s) 459
BsiHKCI CYCGRG 3 cut(s) 279, 995, 1077
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 7 cut(s) 412, 438, 445, 562, 847, 896, 1151
BsmFI GGGAC 1 cut(s) 226
BsmI GAATGC 1 cut(s) 975
BsnI GGCC 4 cut(s) 297, 405, 527, 1075
BsoBI CYCGRG 3 cut(s) 279, 995, 1077
Bsp119I TTCGAA 1 cut(s) 785
Bsp1286I GDGCHC 1 cut(s) 744
Bsp1407I TGTACA 1 cut(s) 1056
Bsp143I GATC 7 cut(s) 238, 358, 396, 456, 478, 535, 550
Bsp1720I GCTNAGC 1 cut(s) 958
BspACI CCGC 5 cut(s) 158, 313, 450, 607, 1193
BspANI GGCC 4 cut(s) 297, 405, 527, 1075
BspCNI CTCAG 3 cut(s) 66, 714, 1138
BspLI GGNNCC 5 cut(s) 69, 96, 398, 429, 1132
BspMI ACCTGC 1 cut(s) 706
BspOI GCTAGC 2 cut(s) 38, 120
BspPI GGATC 6 cut(s) 246, 353, 391, 404, 530, 558
BspQI GCTCTTC 1 cut(s) 738
BspT104I TTCGAA 1 cut(s) 785
BsrBI CCGCTC 1 cut(s) 607
BsrFI RCCGGY 2 cut(s) 70, 484
BsrGI TGTACA 1 cut(s) 1056
BsrI ACTGG 1 cut(s) 821
BssAI RCCGGY 2 cut(s) 70, 484
BssECI CCNNGG 9 cut(s) 98, 279, 299, 400, 646, 737, 860, 911, 994
BssMI GATC 7 cut(s) 238, 358, 396, 456, 478, 535, 550
BssSI CACGAG 1 cut(s) 743
BssT1I CCWWGG 2 cut(s) 299, 911
Bst2BI CACGAG 1 cut(s) 743
Bst2UI CCWGG 5 cut(s) 31, 80, 738, 861, 1170
Bst4CI ACNGT 2 cut(s) 217, 694
Bst6I CTCTTC 2 cut(s) 738, 912
BstAPI GCANNNNNTGC 1 cut(s) 14
BstAUI TGTACA 1 cut(s) 1056
BstBI TTCGAA 1 cut(s) 785
BstC8I GCNNGC 5 cut(s) 36, 118, 315, 729, 1073
BstDEI CTNAG 5 cut(s) 53, 89, 722, 958, 1146
BstDSI CCRYGG 2 cut(s) 400, 646
BstF5I GGATG 4 cut(s) 906, 931, 937, 1156
BstH2I RGCGCY 1 cut(s) 186
BstHHI GCGC 2 cut(s) 185, 1168
BstKTI GATC 7 cut(s) 241, 361, 399, 459, 481, 538, 553
BstMBI GATC 7 cut(s) 238, 358, 396, 456, 478, 535, 550
BstMCI CGRYCG 1 cut(s) 459
BstMWI GCNNNNNNNGC 3 cut(s) 14, 35, 319
BstNI CCWGG 5 cut(s) 31, 80, 738, 861, 1170
BstV1I GCAGC 3 cut(s) 17, 20, 724
BstX2I RGATCY 1 cut(s) 396
BstYI RGATCY 1 cut(s) 396
Bsu36I CCTNAGG 2 cut(s) 89, 1146
BsuRI GGCC 4 cut(s) 297, 405, 527, 1075
BtgI CCRYGG 2 cut(s) 400, 646
BtgZI GCGATG 1 cut(s) 1121
BtrI CACGTC 1 cut(s) 497
BtsCI GGATG 4 cut(s) 906, 931, 937, 1156
BtsIMutI CAGTG 3 cut(s) 357, 690, 828
BveI ACCTGC 1 cut(s) 706
Cac8I GCNNGC 5 cut(s) 36, 118, 315, 729, 1073
CaiI CAGNNNCTG 1 cut(s) 721
CfoI GCGC 2 cut(s) 185, 1168
Cfr10I RCCGGY 2 cut(s) 70, 484
Cfr13I GGNCC 3 cut(s) 296, 796, 1131
Cfr9I CCCGGG 1 cut(s) 279
CseI GACGC 1 cut(s) 893
Csp6I GTAC 2 cut(s) 633, 1057
CspAI ACCGGT 1 cut(s) 70
CviAII CATG 2 cut(s) 22, 231
CviQI GTAC 2 cut(s) 633, 1057
DdeI CTNAG 5 cut(s) 53, 89, 722, 958, 1146
DpnI GATC 7 cut(s) 240, 360, 398, 458, 480, 537, 552
DpnII GATC 7 cut(s) 238, 358, 396, 456, 478, 535, 550
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 525
Eam1104I CTCTTC 2 cut(s) 738, 912
EarI CTCTTC 2 cut(s) 738, 912
EciI GGCGGA 2 cut(s) 465, 1182
Eco130I CCWWGG 2 cut(s) 299, 911
Eco147I AGGCCT 1 cut(s) 1075
Eco24I GRGCYC 1 cut(s) 744
Eco47I GGWCC 2 cut(s) 796, 1131
Eco47III AGCGCT 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 888
Eco81I CCTNAGG 2 cut(s) 89, 1146
Eco88I CYCGRG 3 cut(s) 279, 995, 1077
EcoO109I RGGNCCY 2 cut(s) 296, 796
EcoRI GAATTC 1 cut(s) 1004
EcoRII CCWGG 5 cut(s) 29, 78, 736, 859, 1168
EcoT14I CCWWGG 2 cut(s) 299, 911
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 2 cut(s) 299, 911
FaeI CATG 2 cut(s) 25, 234
FaiI YATR 8 cut(s) 23, 232, 320, 603, 954, 1012, 1014, 1086
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FaqI GGGAC 1 cut(s) 226
FatI CATG 2 cut(s) 21, 230
FauI CCCGC 1 cut(s) 306
FauNDI CATATG 1 cut(s) 1012
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 4 cut(s) 6, 9, 608, 713
FokI GGATG 4 cut(s) 913, 938, 944, 1163
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 4 cut(s) 6, 9, 608, 713
FspBI CTAG 4 cut(s) 35, 117, 912, 1001
GlaI GCGC 2 cut(s) 184, 1167
GluI GCNGC 4 cut(s) 6, 9, 608, 713
GsaI CCCAGC 1 cut(s) 766
HaeII RGCGCY 1 cut(s) 186
HaeIII GGCC 4 cut(s) 297, 405, 527, 1075
HgaI GACGC 1 cut(s) 893
HhaI GCGC 2 cut(s) 185, 1168
Hin1II CATG 2 cut(s) 25, 234
Hin6I GCGC 2 cut(s) 183, 1166
HinP1I GCGC 2 cut(s) 183, 1166
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HindIII AAGCTT 1 cut(s) 368
HinfI GANTC 4 cut(s) 170, 829, 851, 1189
HphI GGTGA 6 cut(s) 74, 295, 376, 473, 512, 1042
Hpy166II GTNNAC 6 cut(s) 76, 252, 258, 633, 700, 1057
Hpy188I TCNGA 6 cut(s) 56, 494, 516, 577, 723, 868
Hpy188III TCNNGA 6 cut(s) 263, 421, 640, 884, 1099, 1145
Hpy8I GTNNAC 6 cut(s) 76, 252, 258, 633, 700, 1057
Hpy99I CGWCG 4 cut(s) 498, 909, 1045, 1189
HpyAV CCTTC 7 cut(s) 97, 283, 416, 792, 1027, 1060, 1096
HpyCH4III ACNGT 2 cut(s) 217, 694
HpyCH4IV ACGT 4 cut(s) 254, 268, 496, 1040
HpyCH4V TGCA 4 cut(s) 544, 624, 826, 982
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 35, 319
HpyF3I CTNAG 5 cut(s) 53, 89, 722, 958, 1146
HpySE526I ACGT 4 cut(s) 254, 268, 496, 1040
Hsp92II CATG 2 cut(s) 25, 234
HspAI GCGC 2 cut(s) 183, 1166
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 7 cut(s) 238, 358, 396, 456, 478, 535, 550
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 3 cut(s) 180, 511, 1181
Lsp1109I GCAGC 3 cut(s) 17, 20, 724
LweI GCATC 2 cut(s) 493, 891
MaeI CTAG 4 cut(s) 35, 117, 912, 1001
MaeII ACGT 4 cut(s) 254, 268, 496, 1040
MaeIII GTNAC 1 cut(s) 1036
MalI GATC 7 cut(s) 240, 360, 398, 458, 480, 537, 552
MbiI CCGCTC 1 cut(s) 607
MboI GATC 7 cut(s) 238, 358, 396, 456, 478, 535, 550
MboII GAAGA 8 cut(s) 298, 725, 823, 826, 846, 881, 929, 1075
MflI RGATCY 1 cut(s) 396
MhlI GDGCHC 1 cut(s) 744
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 4 cut(s) 107, 757, 787, 1004
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 1 cut(s) 1183
MmeI TCCRAC 1 cut(s) 517
Mox20I TGGCCA 1 cut(s) 527
MscI TGGCCA 1 cut(s) 527
MslI CAYNNNNRTG 1 cut(s) 695
Msp20I TGGCCA 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 313
Mva1269I GAATGC 1 cut(s) 975
MvaI CCWGG 5 cut(s) 31, 80, 738, 861, 1170
MwoI GCNNNNNNNGC 3 cut(s) 14, 35, 319
NciI CCSGG 6 cut(s) 99, 280, 281, 414, 842, 1205
NdeI CATATG 1 cut(s) 1012
NdeII GATC 7 cut(s) 238, 358, 396, 456, 478, 535, 550
NheI GCTAGC 2 cut(s) 34, 116
NlaIII CATG 2 cut(s) 25, 234
NlaIV GGNNCC 5 cut(s) 69, 96, 398, 429, 1132
NspV TTCGAA 1 cut(s) 785
OliI CACNNNNGTG 1 cut(s) 695
PaeR7I CTCGAG 1 cut(s) 1077
PceI AGGCCT 1 cut(s) 1075
PciSI GCTCTTC 1 cut(s) 738
PctI GAATGC 1 cut(s) 975
PfeI GAWTC 3 cut(s) 170, 829, 851
PfoI TCCNGGA 1 cut(s) 840
PinAI ACCGGT 1 cut(s) 70
PkrI GCNGC 4 cut(s) 7, 10, 609, 714
Ple19I CGATCG 1 cut(s) 459
PleI GAGTC 1 cut(s) 1183
PpsI GAGTC 1 cut(s) 1183
PpuMI RGGWCCY 1 cut(s) 796
Psp5II RGGWCCY 1 cut(s) 796
Psp6I CCWGG 5 cut(s) 29, 78, 736, 859, 1168
PspFI CCCAGC 1 cut(s) 762
PspGI CCWGG 5 cut(s) 29, 78, 736, 859, 1168
PspN4I GGNNCC 5 cut(s) 69, 96, 398, 429, 1132
PspPI GGNCC 3 cut(s) 296, 796, 1131
PspPPI RGGWCCY 1 cut(s) 796
PspXI VCTCGAGB 1 cut(s) 1077
PstNI CAGNNNCTG 1 cut(s) 721
PsuI RGATCY 1 cut(s) 396
PvuI CGATCG 1 cut(s) 459
RsaI GTAC 2 cut(s) 634, 1058
RsaNI GTAC 2 cut(s) 633, 1057
RseI CAYNNNNRTG 1 cut(s) 695
SapI GCTCTTC 1 cut(s) 738
SatI GCNGC 4 cut(s) 6, 9, 608, 713
Sau3AI GATC 7 cut(s) 238, 358, 396, 456, 478, 535, 550
Sau96I GGNCC 3 cut(s) 296, 796, 1131
SchI GAGTC 1 cut(s) 1183
SduI GDGCHC 1 cut(s) 744
SfaNI GCATC 2 cut(s) 493, 891
Sfr274I CTCGAG 1 cut(s) 1077
SfuI TTCGAA 1 cut(s) 785
SinI GGWCC 2 cut(s) 796, 1131
SlaI CTCGAG 1 cut(s) 1077
SmaI CCCGGG 1 cut(s) 281
SmiMI CAYNNNNRTG 1 cut(s) 695
SmlI CTYRAG 2 cut(s) 1077, 1175
SmoI CTYRAG 2 cut(s) 1077, 1175
Sse9I AATT 4 cut(s) 107, 757, 787, 1004
SseBI AGGCCT 1 cut(s) 1075
SsiI CCGC 5 cut(s) 158, 313, 450, 607, 1193
SspMI CTAG 4 cut(s) 35, 117, 912, 1001
StuI AGGCCT 1 cut(s) 1075
StyI CCWWGG 2 cut(s) 299, 911
TaaI ACNGT 2 cut(s) 217, 694
TaiI ACGT 4 cut(s) 257, 271, 499, 1043
TaqI TCGA 2 cut(s) 785, 1078
TasI AATT 4 cut(s) 107, 757, 787, 1004
TatI WGTACW 2 cut(s) 632, 1056
TauI GCSGC 1 cut(s) 610
TfiI GAWTC 3 cut(s) 170, 829, 851
TscAI CASTG 3 cut(s) 357, 697, 828
TseI GCWGC 3 cut(s) 5, 8, 712
TspGWI ACGGA 3 cut(s) 389, 440, 663
TspMI CCCGGG 1 cut(s) 279
TspRI CASTG 3 cut(s) 357, 697, 828
VpaK11BI GGWCC 2 cut(s) 796, 1131
XapI RAATTY 3 cut(s) 107, 787, 1004
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XhoI CTCGAG 1 cut(s) 1077
XmaI CCCGGG 1 cut(s) 279
XmaJI CCTAGG 1 cut(s) 911
XspI CTAG 4 cut(s) 35, 117, 912, 1001
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.