FvH4_6g01571

Belongs to the class-I aminoacyl-tRNA synthetase family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Reverse (-)
891749 .. 895392
3644 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01571.t1

Sequence Viewer

Length: 522 bp
ATGCTGCCTACCGTACCTGCTATGGTGTTTCGGGGAAACATCCAAGAATCTCTCTATGTTCCTATGCCTCTTCTTCCTCTGGTTGCAAAAGAAAAGAGAGTAGTTTCAATTCAGGATGTTCCCCAACGAAGATCACTGGTATGCTTAGAGGTAGAAAGGAGGACAATGATGAAGTCTCCTAAGAAGCGTGGGTGTCGTCGTGATAACAAAAACAAGAAGAAGAGTCATGGAGATACCTCGGATTCCATGGCATCTAGTTCCGTGGAAGGAGAGCTGGATATTACCTCTGAATCCGATGCATTTGCTAAATATGCTCGTTGGCTGGAAGGTGATAATCGTTATCCGAAAGGTTGTCATATATCAGCAGGTCAAAAGAAGTGTGACATTAACCCAACCATGTCCTTCACTGATGTGATTAAAGAAGCCAAGAGACGAAGCGAAAATATTCTTAAGTTTGTGTTGAAGTCTGAGTATCAACGTGAGAAAAGTTCATATTCGTTTGCTTATGCTTCTCTAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000049 GO:0000122 GO:0000166 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004812 GO:0004814 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006082 GO:0006139 GO:0006355 GO:0006357 GO:0006399 GO:0006412 GO:0006418 GO:0006420 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0007568 GO:0008144 GO:0008150 GO:0008152 GO:0008340 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009893 GO:0009987 GO:0010259 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0016070 GO:0016597 GO:0016874 GO:0016875 GO:0017076 GO:0017101 GO:0019219 GO:0019222 GO:0019538 GO:0019752 GO:0030554 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031406 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0032991 GO:0034618 GO:0034641 GO:0034645 GO:0034660 GO:0035639 GO:0036094 GO:0043038 GO:0043039 GO:0043043 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043177 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046483 GO:0048518 GO:0048519 GO:0048523 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097367 GO:0140098 GO:0140101 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

174

Amino Acids

19.73

Weight (kDa)

9.65

Isoelectric Point (pI)

78.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 25, 356
AfaI GTAC 1 cut(s) 15
AflII CTTAAG 1 cut(s) 449
AgsI TTSAA 2 cut(s) 108, 463
AleI CACNNNNGTG 1 cut(s) 410
AluBI AGCT 1 cut(s) 274
AluI AGCT 1 cut(s) 274
Alw26I GTCTC 2 cut(s) 180, 424
ApeKI GCWGC 1 cut(s) 4
Asp700I GAANNNNTTC 1 cut(s) 444
AsuHPI GGTGA 1 cut(s) 341
BcgI CGANNNNNNTGC 2 cut(s) 284, 318
BcoDI GTCTC 2 cut(s) 180, 424
BfaI CTAG 1 cut(s) 255
BfrI CTTAAG 1 cut(s) 449
BfuAI ACCTGC 2 cut(s) 25, 356
BisI GCNGC 1 cut(s) 5
BlsI GCNGC 1 cut(s) 6
BmsI GCATC 2 cut(s) 260, 286
BsaJI CCNNGG 3 cut(s) 237, 246, 261
Bse1I ACTGG 1 cut(s) 141
BseDI CCNNGG 3 cut(s) 237, 246, 261
BseGI GGATG 2 cut(s) 39, 121
BseMII CTCAG 1 cut(s) 459
BseNI ACTGG 1 cut(s) 141
BsmAI GTCTC 2 cut(s) 180, 424
BsmBI CGTCTC 1 cut(s) 424
Bsp143I GATC 1 cut(s) 131
Bsp19I CCATGG 1 cut(s) 246
BspCNI CTCAG 1 cut(s) 460
BspMI ACCTGC 2 cut(s) 25, 356
BspTI CTTAAG 1 cut(s) 449
BsrI ACTGG 1 cut(s) 141
BssECI CCNNGG 3 cut(s) 237, 246, 261
BssMI GATC 1 cut(s) 131
BssT1I CCWWGG 1 cut(s) 246
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 75, 215
BstAFI CTTAAG 1 cut(s) 449
BstDEI CTNAG 3 cut(s) 145, 180, 468
BstDSI CCRYGG 2 cut(s) 246, 261
BstF5I GGATG 2 cut(s) 39, 121
BstKTI GATC 1 cut(s) 134
BstMAI GTCTC 2 cut(s) 180, 424
BstMBI GATC 1 cut(s) 131
BstMWI GCNNNNNNNGC 1 cut(s) 311
BtgI CCRYGG 2 cut(s) 246, 261
BtsCI GGATG 2 cut(s) 39, 121
BtsIMutI CAGTG 2 cut(s) 134, 405
BveI ACCTGC 2 cut(s) 25, 356
Csp6I GTAC 1 cut(s) 14
CviAII CATG 3 cut(s) 227, 247, 397
CviJI RGCY 3 cut(s) 274, 322, 425
CviKI_1 RGCY 3 cut(s) 274, 322, 425
CviQI GTAC 1 cut(s) 14
DdeI CTNAG 3 cut(s) 145, 180, 468
DpnI GATC 1 cut(s) 133
DpnII GATC 1 cut(s) 131
Eam1104I CTCTTC 2 cut(s) 75, 215
EarI CTCTTC 2 cut(s) 75, 215
Eco130I CCWWGG 1 cut(s) 246
EcoT14I CCWWGG 1 cut(s) 246
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 424
FaeI CATG 3 cut(s) 230, 250, 400
FatI CATG 3 cut(s) 226, 246, 396
Fnu4HI GCNGC 1 cut(s) 5
FokI GGATG 2 cut(s) 26, 128
Fsp4HI GCNGC 1 cut(s) 5
FspBI CTAG 1 cut(s) 255
GluI GCNGC 1 cut(s) 5
Hin1II CATG 3 cut(s) 230, 250, 400
HinfI GANTC 4 cut(s) 47, 223, 242, 290
HphI GGTGA 1 cut(s) 341
Hpy188I TCNGA 5 cut(s) 241, 289, 295, 345, 469
Hpy188III TCNNGA 2 cut(s) 113, 200
Hpy99I CGWCG 1 cut(s) 201
HpyAV CCTTC 3 cut(s) 260, 320, 412
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4IV ACGT 1 cut(s) 478
HpyCH4V TGCA 2 cut(s) 86, 299
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 3 cut(s) 145, 180, 468
HpySE526I ACGT 1 cut(s) 478
Hsp92II CATG 3 cut(s) 230, 250, 400
Kzo9I GATC 1 cut(s) 131
LpnPI CCDG 7 cut(s) 30, 65, 98, 122, 260, 308, 351
LweI GCATC 2 cut(s) 260, 286
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 478
MaeIII GTNAC 1 cut(s) 380
MalI GATC 1 cut(s) 133
MboI GATC 1 cut(s) 131
MboII GAAGA 5 cut(s) 62, 65, 141, 229, 232
MluCI AATT 1 cut(s) 108
MlyI GAGTC 1 cut(s) 232
MnlI CCTC 6 cut(s) 78, 87, 142, 153, 247, 295
Mph1103I ATGCAT 1 cut(s) 301
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 3 cut(s) 387, 417, 450
MslI CAYNNNNRTG 2 cut(s) 139, 410
MspCI CTTAAG 1 cut(s) 449
MwoI GCNNNNNNNGC 1 cut(s) 311
NcoI CCATGG 1 cut(s) 246
NdeII GATC 1 cut(s) 131
NlaIII CATG 3 cut(s) 230, 250, 400
NmuCI GTSAC 1 cut(s) 380
NsiI ATGCAT 1 cut(s) 301
OliI CACNNNNGTG 1 cut(s) 410
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 3 cut(s) 47, 242, 290
PkrI GCNGC 1 cut(s) 6
PleI GAGTC 1 cut(s) 231
PpsI GAGTC 1 cut(s) 231
RsaI GTAC 1 cut(s) 15
RsaNI GTAC 1 cut(s) 14
RseI CAYNNNNRTG 2 cut(s) 139, 410
SaqAI TTAA 3 cut(s) 387, 417, 450
SatI GCNGC 1 cut(s) 5
Sau3AI GATC 1 cut(s) 131
SchI GAGTC 1 cut(s) 232
SetI ASST 9 cut(s) 19, 153, 239, 276, 287, 331, 352, 370, 481
SfaNI GCATC 2 cut(s) 260, 286
SmiMI CAYNNNNRTG 2 cut(s) 139, 410
SmlI CTYRAG 1 cut(s) 449
SmoI CTYRAG 1 cut(s) 449
Sse9I AATT 1 cut(s) 108
SspI AATATT 1 cut(s) 445
SspMI CTAG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 13
TaiI ACGT 1 cut(s) 481
TasI AATT 1 cut(s) 108
TfiI GAWTC 3 cut(s) 47, 242, 290
Tru1I TTAA 3 cut(s) 387, 417, 450
Tru9I TTAA 3 cut(s) 387, 417, 450
TscAI CASTG 2 cut(s) 141, 412
TseFI GTSAC 1 cut(s) 380
TseI GCWGC 1 cut(s) 4
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 185, 480
TspGWI ACGGA 1 cut(s) 250
TspRI CASTG 2 cut(s) 141, 412
Vha464I CTTAAG 1 cut(s) 449
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.