Rmu_sc0002460.1_g000036

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002460.1
Physical Location & Seq
Forward (+)
138374 .. 141214
2841 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002460.1_g000036.1.cds

Sequence Viewer

Length: 1008 bp
atgccagtttatctacatcatagtatatgcaccaaggaattatctggaatcactggtacgagatatgtgggatgtatagcttttatttccagactagacagggaggatccagtggaccttggtgatcttaggaaccctgggaagcctttcctctctagcaatcacttcatggtaggacggttgaattcttatcgattggtgaatatcgattcgttccggagtccgatccgctctatgtggtgtttgaatgggactgtgggaatgcagcaaccacaatatcgattcctattctccttttccaatgccagagacatttctagggttaagagaggtggcccatggtgttttcagcgttcaatggtgctgctcaatgactacgacggtgcatctgacattacggttatccctctggacgatactctccagttgatcggagaaacaaatgggtcggtgttggaggtggatgaacgcgggctgcgtgatggtgaggcgcagctacgtctgatggggaggtgcagatcttgttggatgattaaccatggaggggcggcttgtcccaaggtggcggacgttgaggcgatgtcggagggtgagatagtggctacgacgacatctcctataccattgtttcgggctatcacacctcttgccctagcctcttcgactcctcttattcagatggatctcggagagcttgttagggtttatagggtgagaaggcaaagggttggcgacattgttggggctgggaaacttccaaagcatggttttgagcttgtgcccatagagatgcagtttgactttgggctgtcatctgaaggtttgttcgaggtctttgttacctcagtagagaataaggtgaaaaagaaaggcagaccccatggtcggagaaacaaacccaaacctgtcgatgttccaaagagcttggaatttatggcaaatagccatgtgggttctgctgtggacaccaatgcagttgttggtgtgatgcaggaacccctttcctag

Protein Analysis

335

Amino Acids

37.11

Weight (kDa)

8.66

Isoelectric Point (pI)

35.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 882
AccB7I CCANNNNNTGG 1 cut(s) 764
AccBSI CCGCTC 1 cut(s) 231
AccII CGCG 1 cut(s) 471
AccIII TCCGGA 1 cut(s) 216
AciI CCGC 4 cut(s) 229, 471, 548, 566
AclWI GGATC 4 cut(s) 101, 114, 220, 690
AcsI RAATTY 2 cut(s) 184, 929
AcuI CTGAAG 1 cut(s) 837
AfaI GTAC 1 cut(s) 58
AfiI CCNNNNNNNGG 3 cut(s) 544, 764, 885
AgsI TTSAA 3 cut(s) 184, 247, 357
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 5 cut(s) 80, 496, 694, 775, 924
AluI AGCT 5 cut(s) 80, 496, 694, 775, 924
Alw26I GTCTC 1 cut(s) 303
AlwI GGATC 4 cut(s) 101, 114, 220, 690
Aor13HI TCCGGA 1 cut(s) 216
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 4 cut(s) 265, 364, 475, 493
ApoI RAATTY 2 cut(s) 184, 929
Asp700I GAANNNNTTC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 493
AspS9I GGNCC 2 cut(s) 115, 335
AsuHPI GGTGA 6 cut(s) 134, 211, 497, 602, 724, 871
AvaII GGWCC 1 cut(s) 115
BaeGI GKGCMC 1 cut(s) 783
BamHI GGATCC 1 cut(s) 106
BbvI GCAGC 4 cut(s) 277, 351, 462, 505
BccI CCATC 3 cut(s) 476, 499, 673
BciT130I CCWGG 1 cut(s) 138
BcoDI GTCTC 1 cut(s) 303
BfaI CTAG 5 cut(s) 95, 156, 318, 653, 1006
BglII AGATCT 1 cut(s) 518
BisI GCNGC 5 cut(s) 266, 365, 476, 494, 549
BlsI GCNGC 5 cut(s) 267, 366, 477, 495, 550
Bme1390I CCNGG 1 cut(s) 138
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 115, 335
BmiI GGNNCC 3 cut(s) 108, 134, 996
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 3 cut(s) 395, 780, 978
BpmI CTGGAG 1 cut(s) 407
Bsa29I ATCGAT 3 cut(s) 193, 207, 280
BsaJI CCNNGG 8 cut(s) 33, 118, 136, 137, 338, 538, 558, 880
BsaWI WCCGGW 1 cut(s) 216
BsaXI ACNNNNNCTCC 4 cut(s) 598, 628, 681, 711
Bsc4I CCNNNNNNNGG 3 cut(s) 544, 764, 885
Bse1I ACTGG 4 cut(s) 5, 58, 110, 424
BseAI TCCGGA 1 cut(s) 216
BseBI CCWGG 1 cut(s) 138
BseCI ATCGAT 3 cut(s) 193, 207, 280
BseDI CCNNGG 8 cut(s) 33, 118, 136, 137, 338, 538, 558, 880
BseGI GGATG 3 cut(s) 77, 469, 534
BseLI CCNNNNNNNGG 3 cut(s) 544, 764, 885
BseMII CTCAG 1 cut(s) 858
BseNI ACTGG 4 cut(s) 5, 58, 110, 424
BseRI GAGGAG 1 cut(s) 657
BseSI GKGCMC 1 cut(s) 783
BseXI GCAGC 4 cut(s) 277, 351, 462, 505
BseYI CCCAGC 1 cut(s) 746
BsgI GTGCAG 1 cut(s) 535
Bsh1236I CGCG 1 cut(s) 471
BshFI GGCC 1 cut(s) 336
BshVI ATCGAT 3 cut(s) 193, 207, 280
BsiSI CCGG 1 cut(s) 217
BslFI GGGAC 2 cut(s) 265, 540
BslI CCNNNNNNNGG 3 cut(s) 544, 764, 885
BsmAI GTCTC 1 cut(s) 303
BsmFI GGGAC 2 cut(s) 265, 540
BsmI GAATGC 1 cut(s) 267
BsnI GGCC 1 cut(s) 336
Bsp1286I GDGCHC 1 cut(s) 783
Bsp13I TCCGGA 1 cut(s) 216
Bsp143I GATC 6 cut(s) 106, 124, 225, 429, 518, 682
Bsp19I CCATGG 3 cut(s) 338, 538, 880
BspACI CCGC 4 cut(s) 229, 471, 548, 566
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 1 cut(s) 857
BspDI ATCGAT 3 cut(s) 193, 207, 280
BspEI TCCGGA 1 cut(s) 216
BspFNI CGCG 1 cut(s) 471
BspLI GGNNCC 3 cut(s) 108, 134, 996
BspPI GGATC 4 cut(s) 101, 114, 220, 690
BsrBI CCGCTC 1 cut(s) 231
BsrI ACTGG 4 cut(s) 5, 58, 110, 424
BssECI CCNNGG 8 cut(s) 33, 118, 136, 137, 338, 538, 558, 880
BssMI GATC 6 cut(s) 106, 124, 225, 429, 518, 682
BssT1I CCWWGG 6 cut(s) 33, 118, 338, 538, 558, 880
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 4 cut(s) 180, 256, 383, 400
Bst6I CTCTTC 1 cut(s) 664
BstC8I GCNNGC 1 cut(s) 473
BstDEI CTNAG 2 cut(s) 128, 844
BstDSI CCRYGG 3 cut(s) 338, 538, 880
BstF5I GGATG 3 cut(s) 77, 469, 534
BstFNI CGCG 1 cut(s) 471
BstHHI GCGC 1 cut(s) 493
BstKTI GATC 6 cut(s) 109, 127, 228, 432, 521, 685
BstMAI GTCTC 1 cut(s) 303
BstMBI GATC 6 cut(s) 106, 124, 225, 429, 518, 682
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstSLI GKGCMC 1 cut(s) 783
BstUI CGCG 1 cut(s) 471
BstV1I GCAGC 4 cut(s) 277, 351, 462, 505
BstX2I RGATCY 3 cut(s) 106, 518, 682
BstYI RGATCY 3 cut(s) 106, 518, 682
Bsu15I ATCGAT 3 cut(s) 193, 207, 280
BsuRI GGCC 1 cut(s) 336
BsuTUI ATCGAT 3 cut(s) 193, 207, 280
BtgI CCRYGG 3 cut(s) 338, 538, 880
BtgZI GCGATG 1 cut(s) 593
BtsCI GGATG 3 cut(s) 77, 469, 534
BtsIMutI CAGTG 2 cut(s) 51, 117
Cac8I GCNNGC 1 cut(s) 473
CfoI GCGC 1 cut(s) 493
Cfr13I GGNCC 2 cut(s) 115, 335
ClaI ATCGAT 3 cut(s) 193, 207, 280
Csp6I GTAC 1 cut(s) 57
CviAII CATG 6 cut(s) 169, 339, 539, 764, 881, 947
CviQI GTAC 1 cut(s) 57
DdeI CTNAG 2 cut(s) 128, 844
DpnI GATC 6 cut(s) 108, 126, 227, 431, 520, 684
DpnII GATC 6 cut(s) 106, 124, 225, 429, 518, 682
DrdI GACNNNNNNGTC 1 cut(s) 882
DseDI GACNNNNNNGTC 1 cut(s) 882
Eam1104I CTCTTC 1 cut(s) 664
EarI CTCTTC 1 cut(s) 664
EciI GGCGGA 1 cut(s) 581
Eco130I CCWWGG 6 cut(s) 33, 118, 338, 538, 558, 880
Eco47I GGWCC 1 cut(s) 115
Eco57I CTGAAG 1 cut(s) 837
EcoRI GAATTC 1 cut(s) 184
EcoRII CCWGG 1 cut(s) 136
EcoT14I CCWWGG 6 cut(s) 33, 118, 338, 538, 558, 880
ErhI CCWWGG 6 cut(s) 33, 118, 338, 538, 558, 880
FaeI CATG 6 cut(s) 172, 342, 542, 767, 884, 950
FaqI GGGAC 2 cut(s) 265, 540
FatI CATG 6 cut(s) 168, 338, 538, 763, 880, 946
FauI CCCGC 1 cut(s) 464
Fnu4HI GCNGC 5 cut(s) 266, 365, 476, 494, 549
FokI GGATG 3 cut(s) 84, 476, 541
Fsp4HI GCNGC 5 cut(s) 266, 365, 476, 494, 549
FspBI CTAG 5 cut(s) 95, 156, 318, 653, 1006
GlaI GCGC 1 cut(s) 492
GluI GCNGC 5 cut(s) 266, 365, 476, 494, 549
GsaI CCCAGC 1 cut(s) 750
GsuI CTGGAG 1 cut(s) 407
HaeIII GGCC 1 cut(s) 336
HapII CCGG 1 cut(s) 217
HhaI GCGC 1 cut(s) 493
Hin1II CATG 6 cut(s) 172, 342, 542, 767, 884, 950
Hin6I GCGC 1 cut(s) 491
HinP1I GCGC 1 cut(s) 491
HinfI GANTC 5 cut(s) 48, 209, 220, 282, 664
HpaII CCGG 1 cut(s) 217
HphI GGTGA 6 cut(s) 134, 211, 497, 602, 724, 871
Hpy166II GTNNAC 2 cut(s) 115, 964
Hpy188I TCNGA 9 cut(s) 225, 391, 434, 504, 586, 678, 689, 817, 888
Hpy188III TCNNGA 4 cut(s) 45, 90, 217, 410
Hpy8I GTNNAC 2 cut(s) 115, 964
Hpy99I CGWCG 2 cut(s) 383, 610
HpyAV CCTTC 2 cut(s) 711, 812
HpyCH4III ACNGT 4 cut(s) 180, 256, 383, 400
HpyCH4IV ACGT 2 cut(s) 499, 570
HpyCH4V TGCA 7 cut(s) 30, 265, 386, 516, 793, 974, 991
HpyF3I CTNAG 2 cut(s) 128, 844
HpySE526I ACGT 2 cut(s) 499, 570
Hsp92II CATG 6 cut(s) 172, 342, 542, 767, 884, 950
HspAI GCGC 1 cut(s) 491
Kpn2I TCCGGA 1 cut(s) 216
Kzo9I GATC 6 cut(s) 106, 124, 225, 429, 518, 682
Lsp1109I GCAGC 4 cut(s) 277, 351, 462, 505
LweI GCATC 3 cut(s) 395, 780, 978
MaeI CTAG 5 cut(s) 95, 156, 318, 653, 1006
MaeII ACGT 2 cut(s) 499, 570
MaeIII GTNAC 1 cut(s) 838
MalI GATC 6 cut(s) 108, 126, 227, 431, 520, 684
MbiI CCGCTC 1 cut(s) 231
MboI GATC 6 cut(s) 106, 124, 225, 429, 518, 682
MboII GAAGA 1 cut(s) 651
MflI RGATCY 3 cut(s) 106, 518, 682
MhlI GDGCHC 1 cut(s) 783
MluCI AATT 3 cut(s) 38, 184, 929
MlyI GAGTC 2 cut(s) 229, 658
MmeI TCCRAC 4 cut(s) 435, 506, 564, 866
MroI TCCGGA 1 cut(s) 216
MroXI GAANNNNTTC 1 cut(s) 146
MseI TTAA 2 cut(s) 324, 534
MslI CAYNNNNRTG 1 cut(s) 788
MspI CCGG 1 cut(s) 217
MspR9I CCNGG 1 cut(s) 138
Mva1269I GAATGC 1 cut(s) 267
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 471
NcoI CCATGG 3 cut(s) 338, 538, 880
NdeII GATC 6 cut(s) 106, 124, 225, 429, 518, 682
NlaIII CATG 6 cut(s) 172, 342, 542, 767, 884, 950
NlaIV GGNNCC 3 cut(s) 108, 134, 996
PasI CCCWGGG 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 475
PctI GAATGC 1 cut(s) 267
PdmI GAANNNNTTC 1 cut(s) 146
PfeI GAWTC 3 cut(s) 48, 209, 282
PflMI CCANNNNNTGG 1 cut(s) 764
PkrI GCNGC 5 cut(s) 267, 366, 477, 495, 550
PleI GAGTC 2 cut(s) 228, 658
PpsI GAGTC 2 cut(s) 228, 658
Psp6I CCWGG 1 cut(s) 136
PspFI CCCAGC 1 cut(s) 746
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 3 cut(s) 108, 134, 996
PspPI GGNCC 2 cut(s) 115, 335
PsuI RGATCY 3 cut(s) 106, 518, 682
RsaI GTAC 1 cut(s) 58
RsaNI GTAC 1 cut(s) 57
RseI CAYNNNNRTG 1 cut(s) 788
SaqAI TTAA 2 cut(s) 324, 534
SatI GCNGC 5 cut(s) 266, 365, 476, 494, 549
Sau3AI GATC 6 cut(s) 106, 124, 225, 429, 518, 682
Sau96I GGNCC 2 cut(s) 115, 335
SchI GAGTC 2 cut(s) 229, 658
ScrFI CCNGG 1 cut(s) 138
SduI GDGCHC 1 cut(s) 783
SfaNI GCATC 3 cut(s) 395, 780, 978
SinI GGWCC 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 788
Sse9I AATT 3 cut(s) 38, 184, 929
SsiI CCGC 4 cut(s) 229, 471, 548, 566
SspMI CTAG 5 cut(s) 95, 156, 318, 653, 1006
StyD4I CCNGG 1 cut(s) 136
StyI CCWWGG 6 cut(s) 33, 118, 338, 538, 558, 880
TaaI ACNGT 4 cut(s) 180, 256, 383, 400
TaiI ACGT 2 cut(s) 502, 573
TaqI TCGA 6 cut(s) 193, 207, 280, 662, 828, 909
TasI AATT 3 cut(s) 38, 184, 929
TauI GCSGC 1 cut(s) 551
TfiI GAWTC 3 cut(s) 48, 209, 282
Tru1I TTAA 2 cut(s) 324, 534
Tru9I TTAA 2 cut(s) 324, 534
TscAI CASTG 2 cut(s) 58, 117
TseI GCWGC 4 cut(s) 265, 364, 475, 493
TspDTI ATGAA 2 cut(s) 157, 480
TspRI CASTG 2 cut(s) 58, 117
Van91I CCANNNNNTGG 1 cut(s) 764
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 2 cut(s) 184, 929
XmnI GAANNNNTTC 1 cut(s) 146
XspI CTAG 5 cut(s) 95, 156, 318, 653, 1006
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.