Rmu_sc0002918.1_g000009

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002918.1
OG0000172
Physical Location & Seq
Forward (+)
86405 .. 93098
6694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002918.1_g000009.1.cds

Sequence Viewer

Length: 1095 bp
atgatcctgctaaatgattatgatggattctcggagattgctaaagtgaagcttgattttgtttggatctgggttgtgcttcaaggcatcccaccgggtattttgactgaacccacggtcaggctggtgggagggacgattagagaggttctggaggtggatcgtttggctcatcgtcatggggaagctcgggtccggcttactctatttatcaatgactcgatgagcctggatcgtagggttagggttgctcccactgacatcttgacactacgctttcgggaggatgagtcagaaatcgatactgtggtggaggagggctcgcaacagacatcggggtctgctctcctagcccttgtgttcagggctaactcccagccctctccttctttgctttcgactttcaaagttcctaacttgctgaagaataaacaagtgcagattcgtgcccttccggagtcggtgactttgtctgggtctgaaggcacatatgcttctgttccaatggtgaaggtgacgtcacctcccaaggtttacaagaagaaaggtaggcctaggggacagagaaacaagattaagctggcaacgtctgtgtgtggtgactttgagtccatggtgttaggctcaacagaggagggtctcgatagtatgcatggtatacatgagggagtggcagctttgcctgcttcttgggatgagctgcgaccatcgatcggttcctctcctcatcctcgactcgtctgtggcggtggaacaccatgcctgggccggaaaacggcaggagacagtcgagaactccacggccccgttttgagtcaacgcgtcaatctcccaactccggccaccaaaaatggtcagaccaagtccattaggaggaatttagacgaagagcatcctctccaaagcttttgccgagaattgaaatgtggaggaagatctaacggctggaagctacagcccttgcgcacccatgtgccacctactgcccatgcagcattgcggcactcctgctgcccctgcagcatagcagctcgctcgttcttgtgcaaatcagcctgcttggacgccccgaaacgtcttgttcaggacctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

364

Amino Acids

39.84

Weight (kDa)

9.27

Isoelectric Point (pI)

55.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 337
AatII GACGTC 1 cut(s) 521
Acc16I TGCGCA 1 cut(s) 965
AccI GTMKAC 1 cut(s) 658
AccII CGCG 1 cut(s) 822
AccIII TCCGGA 1 cut(s) 454
AciI CCGC 2 cut(s) 747, 1000
AclWI GGATC 3 cut(s) 74, 168, 240
AcoI YGGCCR 1 cut(s) 840
AcsI RAATTY 1 cut(s) 877
AcuI CTGAAG 2 cut(s) 443, 501
AcyI GRCGYC 2 cut(s) 518, 1065
AfiI CCNNNNNNNGG 6 cut(s) 120, 713, 764, 775, 838, 873
AflIII ACRYGT 1 cut(s) 820
AgsI TTSAA 3 cut(s) 83, 406, 922
AhdI GACNNNNNGTC 1 cut(s) 607
AjnI CCWGG 2 cut(s) 228, 762
AleI CACNNNNGTG 1 cut(s) 971
AluBI AGCT 8 cut(s) 52, 188, 580, 677, 700, 906, 952, 1031
AluI AGCT 8 cut(s) 52, 188, 580, 677, 700, 906, 952, 1031
Alw26I GTCTC 2 cut(s) 644, 777
AlwI GGATC 3 cut(s) 74, 168, 240
Ama87I CYCGRG 1 cut(s) 189
Aor13HI TCCGGA 1 cut(s) 454
AoxI GGCC 4 cut(s) 551, 766, 802, 840
ApeKI GCWGC 6 cut(s) 674, 700, 992, 1011, 1020, 1028
ApoI RAATTY 1 cut(s) 877
AspA2I CCTAGG 1 cut(s) 554
AspLEI GCGC 1 cut(s) 966
AspS9I GGNCC 4 cut(s) 193, 766, 803, 1087
AsuC2I CCSGG 1 cut(s) 96
AsuHPI GGTGA 5 cut(s) 475, 513, 520, 526, 611
AvaI CYCGRG 1 cut(s) 189
AvaII GGWCC 2 cut(s) 193, 1087
AvrII CCTAGG 1 cut(s) 554
BaeGI GKGCMC 1 cut(s) 451
BaeI ACNNNNGTAYC 2 cut(s) 294, 327
BanII GRGCYC 1 cut(s) 323
BbvI GCAGC 6 cut(s) 686, 687, 998, 1004, 1032, 1040
BccI CCATC 2 cut(s) 17, 715
BceAI ACGGC 3 cut(s) 792, 817, 958
BcgI CGANNNNNNTGC 2 cut(s) 1017, 1051
BciT130I CCWGG 2 cut(s) 230, 764
BcnI CCSGG 1 cut(s) 96
BcoDI GTCTC 2 cut(s) 644, 777
BfaI CTAG 2 cut(s) 350, 555
BfmI CTRYAG 2 cut(s) 953, 1018
BglII AGATCT 1 cut(s) 935
BisI GCNGC 7 cut(s) 675, 701, 993, 1001, 1012, 1021, 1029
BlnI CCTAGG 1 cut(s) 554
BlsI GCNGC 7 cut(s) 676, 702, 994, 1002, 1013, 1022, 1030
Bme1390I CCNGG 3 cut(s) 96, 230, 764
Bme18I GGWCC 2 cut(s) 193, 1087
BmeRI GACNNNNNGTC 1 cut(s) 607
BmeT110I CYCGRG 1 cut(s) 189
BmgT120I GGNCC 4 cut(s) 193, 766, 803, 1087
BmiI GGNNCC 3 cut(s) 194, 718, 805
BmrFI CCNGG 3 cut(s) 96, 230, 764
BmsI GCATC 2 cut(s) 96, 901
BplI GAGNNNNNCTC 2 cut(s) 305, 337
BpmI CTGGAG 1 cut(s) 173
BpuMI CCSGG 1 cut(s) 96
Bsa29I ATCGAT 2 cut(s) 300, 710
BsaHI GRCGYC 2 cut(s) 518, 1065
BsaI GGTCTC 1 cut(s) 644
BsaJI CCNNGG 6 cut(s) 114, 528, 554, 612, 763, 799
BsaWI WCCGGW 1 cut(s) 454
BsaXI ACNNNNNCTCC 4 cut(s) 275, 305, 508, 538
Bsc4I CCNNNNNNNGG 6 cut(s) 120, 713, 764, 775, 838, 873
Bse3DI GCAATG 1 cut(s) 995
BseAI TCCGGA 1 cut(s) 454
BseBI CCWGG 2 cut(s) 230, 764
BseCI ATCGAT 2 cut(s) 300, 710
BseDI CCNNGG 6 cut(s) 114, 528, 554, 612, 763, 799
BseGI GGATG 5 cut(s) 87, 292, 700, 727, 892
BseLI CCNNNNNNNGG 6 cut(s) 120, 713, 764, 775, 838, 873
BseMI GCAATG 1 cut(s) 995
BseRI GAGGAG 3 cut(s) 329, 647, 714
BseSI GKGCMC 1 cut(s) 451
BseXI GCAGC 6 cut(s) 686, 687, 998, 1004, 1032, 1040
BseYI CCCAGC 1 cut(s) 375
BsgI GTGCAG 1 cut(s) 458
Bsh1236I CGCG 1 cut(s) 822
Bsh1285I CGRYCG 1 cut(s) 714
BshFI GGCC 4 cut(s) 553, 768, 804, 842
BshVI ATCGAT 2 cut(s) 300, 710
BsiEI CGRYCG 1 cut(s) 714
BsiHKCI CYCGRG 1 cut(s) 189
BsiSI CCGG 5 cut(s) 95, 196, 455, 769, 839
BslFI GGGAC 2 cut(s) 148, 573
BslI CCNNNNNNNGG 6 cut(s) 120, 713, 764, 775, 838, 873
BsmAI GTCTC 2 cut(s) 644, 777
BsmFI GGGAC 2 cut(s) 148, 573
BsnI GGCC 4 cut(s) 553, 768, 804, 842
Bso31I GGTCTC 1 cut(s) 644
BsoBI CYCGRG 1 cut(s) 189
Bsp1286I GDGCHC 2 cut(s) 323, 451
Bsp13I TCCGGA 1 cut(s) 454
Bsp143I GATC 6 cut(s) 3, 66, 160, 232, 711, 935
Bsp19I CCATGG 1 cut(s) 612
BspACI CCGC 2 cut(s) 747, 1000
BspANI GGCC 4 cut(s) 553, 768, 804, 842
BspDI ATCGAT 2 cut(s) 300, 710
BspEI TCCGGA 1 cut(s) 454
BspFNI CGCG 1 cut(s) 822
BspLI GGNNCC 3 cut(s) 194, 718, 805
BspMAI CTGCAG 1 cut(s) 1022
BspPI GGATC 3 cut(s) 74, 168, 240
BspQI GCTCTTC 1 cut(s) 882
BspTNI GGTCTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 995
BssECI CCNNGG 6 cut(s) 114, 528, 554, 612, 763, 799
BssMI GATC 6 cut(s) 3, 66, 160, 232, 711, 935
BssNAI GTATAC 1 cut(s) 659
BssNI GRCGYC 2 cut(s) 518, 1065
BssT1I CCWWGG 3 cut(s) 528, 554, 612
Bst1107I GTATAC 1 cut(s) 659
Bst2UI CCWGG 2 cut(s) 230, 764
Bst4CI ACNGT 3 cut(s) 118, 307, 788
Bst6I CTCTTC 1 cut(s) 882
BstACI GRCGYC 2 cut(s) 518, 1065
BstC8I GCNNGC 5 cut(s) 323, 582, 684, 1033, 1057
BstDSI CCRYGG 3 cut(s) 114, 612, 799
BstF5I GGATG 5 cut(s) 87, 292, 700, 727, 892
BstFNI CGCG 1 cut(s) 822
BstHHI GCGC 1 cut(s) 966
BstKTI GATC 6 cut(s) 6, 69, 163, 235, 714, 938
BstMAI GTCTC 2 cut(s) 644, 777
BstMBI GATC 6 cut(s) 3, 66, 160, 232, 711, 935
BstMCI CGRYCG 1 cut(s) 714
BstMWI GCNNNNNNNGC 5 cut(s) 350, 683, 992, 1017, 1020
BstNI CCWGG 2 cut(s) 230, 764
BstSCI CCNGG 3 cut(s) 94, 228, 762
BstSFI CTRYAG 2 cut(s) 953, 1018
BstSLI GKGCMC 1 cut(s) 451
BstUI CGCG 1 cut(s) 822
BstV1I GCAGC 6 cut(s) 686, 687, 998, 1004, 1032, 1040
BstX2I RGATCY 2 cut(s) 66, 935
BstYI RGATCY 2 cut(s) 66, 935
BstZ17I GTATAC 1 cut(s) 659
Bsu15I ATCGAT 2 cut(s) 300, 710
BsuRI GGCC 4 cut(s) 553, 768, 804, 842
BsuTUI ATCGAT 2 cut(s) 300, 710
BtgI CCRYGG 3 cut(s) 114, 612, 799
BtsCI GGATG 5 cut(s) 87, 292, 700, 727, 892
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 5 cut(s) 323, 582, 684, 1033, 1057
CfoI GCGC 1 cut(s) 966
Cfr13I GGNCC 4 cut(s) 193, 766, 803, 1087
ClaI ATCGAT 2 cut(s) 300, 710
CseI GACGC 2 cut(s) 811, 1073
CviAII CATG 7 cut(s) 179, 613, 653, 662, 759, 971, 989
DpnI GATC 6 cut(s) 5, 68, 162, 234, 713, 937
DpnII GATC 6 cut(s) 3, 66, 160, 232, 711, 935
DrdI GACNNNNNNGTC 1 cut(s) 337
DriI GACNNNNNGTC 1 cut(s) 607
DseDI GACNNNNNNGTC 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 840
Eam1104I CTCTTC 1 cut(s) 882
Eam1105I GACNNNNNGTC 1 cut(s) 607
EarI CTCTTC 1 cut(s) 882
Eco130I CCWWGG 3 cut(s) 528, 554, 612
Eco147I AGGCCT 1 cut(s) 553
Eco24I GRGCYC 1 cut(s) 323
Eco31I GGTCTC 1 cut(s) 644
Eco47I GGWCC 2 cut(s) 193, 1087
Eco57I CTGAAG 2 cut(s) 443, 501
Eco88I CYCGRG 1 cut(s) 189
EcoO109I RGGNCCY 1 cut(s) 1087
EcoRII CCWGG 2 cut(s) 228, 762
EcoT14I CCWWGG 3 cut(s) 528, 554, 612
EcoT22I ATGCAT 1 cut(s) 654
EcoT38I GRGCYC 1 cut(s) 323
ErhI CCWWGG 3 cut(s) 528, 554, 612
FaeI CATG 7 cut(s) 182, 616, 656, 665, 762, 974, 992
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FaqI GGGAC 2 cut(s) 148, 573
FatI CATG 7 cut(s) 178, 612, 652, 661, 758, 970, 988
FauNDI CATATG 1 cut(s) 490
FblI GTMKAC 1 cut(s) 658
Fnu4HI GCNGC 7 cut(s) 675, 701, 993, 1001, 1012, 1021, 1029
FokI GGATG 5 cut(s) 74, 299, 707, 714, 879
FriOI GRGCYC 1 cut(s) 323
Fsp4HI GCNGC 7 cut(s) 675, 701, 993, 1001, 1012, 1021, 1029
FspBI CTAG 2 cut(s) 350, 555
FspI TGCGCA 1 cut(s) 965
GlaI GCGC 1 cut(s) 965
GluI GCNGC 7 cut(s) 675, 701, 993, 1001, 1012, 1021, 1029
GsaI CCCAGC 1 cut(s) 379
GsuI CTGGAG 1 cut(s) 173
HaeIII GGCC 4 cut(s) 553, 768, 804, 842
HapII CCGG 5 cut(s) 95, 196, 455, 769, 839
HgaI GACGC 2 cut(s) 811, 1073
HhaI GCGC 1 cut(s) 966
Hin1I GRCGYC 2 cut(s) 518, 1065
Hin1II CATG 7 cut(s) 182, 616, 656, 665, 762, 974, 992
Hin6I GCGC 1 cut(s) 964
HinP1I GCGC 1 cut(s) 964
HincII GTYRAC 1 cut(s) 818
HindII GTYRAC 1 cut(s) 818
HindIII AAGCTT 2 cut(s) 50, 904
HinfI GANTC 8 cut(s) 27, 218, 290, 442, 458, 608, 735, 814
HpaII CCGG 5 cut(s) 95, 196, 455, 769, 839
HphI GGTGA 5 cut(s) 475, 513, 520, 526, 611
Hpy166II GTNNAC 3 cut(s) 535, 659, 818
Hpy188I TCNGA 5 cut(s) 34, 295, 481, 858, 1094
Hpy188III TCNNGA 7 cut(s) 152, 265, 281, 455, 641, 791, 1085
Hpy8I GTNNAC 3 cut(s) 535, 659, 818
HpyAV CCTTC 4 cut(s) 396, 461, 476, 505
HpyCH4III ACNGT 3 cut(s) 118, 307, 788
HpyCH4IV ACGT 3 cut(s) 518, 587, 1075
HpyCH4V TGCA 5 cut(s) 439, 652, 992, 1020, 1047
HpyF10VI GCNNNNNNNGC 5 cut(s) 350, 683, 992, 1017, 1020
HpySE526I ACGT 3 cut(s) 518, 587, 1075
Hsp92I GRCGYC 2 cut(s) 518, 1065
Hsp92II CATG 7 cut(s) 182, 616, 656, 665, 762, 974, 992
HspAI GCGC 1 cut(s) 964
Kpn2I TCCGGA 1 cut(s) 454
Kzo9I GATC 6 cut(s) 3, 66, 160, 232, 711, 935
LguI GCTCTTC 1 cut(s) 882
LmnI GCTCC 1 cut(s) 256
Lsp1109I GCAGC 6 cut(s) 686, 687, 998, 1004, 1032, 1040
LweI GCATC 2 cut(s) 96, 901
MaeI CTAG 2 cut(s) 350, 555
MaeII ACGT 3 cut(s) 518, 587, 1075
MaeIII GTNAC 4 cut(s) 463, 514, 519, 599
MalI GATC 6 cut(s) 5, 68, 162, 234, 713, 937
MboI GATC 6 cut(s) 3, 66, 160, 232, 711, 935
MboII GAAGA 4 cut(s) 436, 553, 899, 945
MflI RGATCY 2 cut(s) 66, 935
MhlI GDGCHC 2 cut(s) 323, 451
MluCI AATT 2 cut(s) 877, 917
MluI ACGCGT 1 cut(s) 820
MlyI GAGTC 6 cut(s) 212, 299, 467, 617, 729, 823
Mph1103I ATGCAT 1 cut(s) 654
MroI TCCGGA 1 cut(s) 454
MseI TTAA 1 cut(s) 576
MslI CAYNNNNRTG 2 cut(s) 177, 971
MspI CCGG 5 cut(s) 95, 196, 455, 769, 839
MspR9I CCNGG 3 cut(s) 96, 230, 764
MvaI CCWGG 2 cut(s) 230, 764
MvnI CGCG 1 cut(s) 822
MwoI GCNNNNNNNGC 5 cut(s) 350, 683, 992, 1017, 1020
NciI CCSGG 1 cut(s) 96
NcoI CCATGG 1 cut(s) 612
NdeI CATATG 1 cut(s) 490
NdeII GATC 6 cut(s) 3, 66, 160, 232, 711, 935
NlaIII CATG 7 cut(s) 182, 616, 656, 665, 762, 974, 992
NlaIV GGNNCC 3 cut(s) 194, 718, 805
NmeAIII GCCGAG 1 cut(s) 938
NmuCI GTSAC 4 cut(s) 463, 514, 519, 599
NsbI TGCGCA 1 cut(s) 965
NsiI ATGCAT 1 cut(s) 654
OliI CACNNNNGTG 1 cut(s) 971
PceI AGGCCT 1 cut(s) 553
PciSI GCTCTTC 1 cut(s) 882
PfeI GAWTC 2 cut(s) 27, 442
PflFI GACNNNGTC 2 cut(s) 469, 862
PkrI GCNGC 7 cut(s) 676, 702, 994, 1002, 1013, 1022, 1030
Ple19I CGATCG 1 cut(s) 714
PleI GAGTC 6 cut(s) 212, 298, 466, 616, 729, 822
PpsI GAGTC 6 cut(s) 212, 298, 466, 616, 729, 822
PpuMI RGGWCCY 1 cut(s) 1087
Psp5II RGGWCCY 1 cut(s) 1087
Psp6I CCWGG 2 cut(s) 228, 762
PspFI CCCAGC 1 cut(s) 375
PspGI CCWGG 2 cut(s) 228, 762
PspN4I GGNNCC 3 cut(s) 194, 718, 805
PspPI GGNCC 4 cut(s) 193, 766, 803, 1087
PspPPI RGGWCCY 1 cut(s) 1087
PstI CTGCAG 1 cut(s) 1022
PsuI RGATCY 2 cut(s) 66, 935
PsyI GACNNNGTC 2 cut(s) 469, 862
PvuI CGATCG 1 cut(s) 714
RseI CAYNNNNRTG 2 cut(s) 177, 971
SapI GCTCTTC 1 cut(s) 882
SaqAI TTAA 1 cut(s) 576
SatI GCNGC 7 cut(s) 675, 701, 993, 1001, 1012, 1021, 1029
Sau3AI GATC 6 cut(s) 3, 66, 160, 232, 711, 935
Sau96I GGNCC 4 cut(s) 193, 766, 803, 1087
SchI GAGTC 6 cut(s) 212, 299, 467, 617, 729, 823
ScrFI CCNGG 3 cut(s) 96, 230, 764
SduI GDGCHC 2 cut(s) 323, 451
SfaNI GCATC 2 cut(s) 96, 901
SfcI CTRYAG 2 cut(s) 953, 1018
SinI GGWCC 2 cut(s) 193, 1087
SmiMI CAYNNNNRTG 2 cut(s) 177, 971
Sse9I AATT 2 cut(s) 877, 917
SseBI AGGCCT 1 cut(s) 553
SsiI CCGC 2 cut(s) 747, 1000
SspMI CTAG 2 cut(s) 350, 555
StuI AGGCCT 1 cut(s) 553
StyD4I CCNGG 3 cut(s) 94, 228, 762
StyI CCWWGG 3 cut(s) 528, 554, 612
TaaI ACNGT 3 cut(s) 118, 307, 788
TaiI ACGT 3 cut(s) 521, 590, 1078
TaqI TCGA 7 cut(s) 221, 300, 398, 642, 710, 733, 790
TasI AATT 2 cut(s) 877, 917
TauI GCSGC 1 cut(s) 1003
TfiI GAWTC 2 cut(s) 27, 442
Tru1I TTAA 1 cut(s) 576
Tru9I TTAA 1 cut(s) 576
TscAI CASTG 1 cut(s) 262
TseFI GTSAC 4 cut(s) 463, 514, 519, 599
TseI GCWGC 6 cut(s) 674, 700, 992, 1011, 1020, 1028
Tsp45I GTSAC 4 cut(s) 463, 514, 519, 599
TspRI CASTG 1 cut(s) 262
Tth111I GACNNNGTC 2 cut(s) 469, 862
VpaK11BI GGWCC 2 cut(s) 193, 1087
XapI RAATTY 1 cut(s) 877
XcmI CCANNNNNNNNNTGG 1 cut(s) 121
XmaJI CCTAGG 1 cut(s) 554
XmiI GTMKAC 1 cut(s) 658
XspI CTAG 2 cut(s) 350, 555
ZraI GACGTC 1 cut(s) 519
Zsp2I ATGCAT 1 cut(s) 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.