Rroxscaffold_1G00057650

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000172
Physical Location & Seq
Forward (+)
79665945 .. 79666223
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00057650.1

Sequence Viewer

Length: 252 bp
ATGACTGCAGCTACAACCAGCCTAGTTGGGGAGACAATTAGACCTGTCCCGCAGGTGGATCACCCCGGAATCCGACGAGGTGTGGTGAAGGTTAGGGTTTCGCTGCCAATCAACAACCCCGTTCATCCGGAGCGCCGTGTTCGGGTCTCTCCGGCATATGTCATCACTCGCATTTCGAGAGTGTGCTATGGTGAATCAATGTGGTGTGCGTTGTCCAAGGAGATTGAAGCGGAGACACGCCTCATAGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

83

Amino Acids

9.28

Weight (kDa)

9.68

Isoelectric Point (pI)

48.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 43
Acc36I ACCTGC 1 cut(s) 43
AccIII TCCGGA 1 cut(s) 127
AciI CCGC 2 cut(s) 50, 230
AclWI GGATC 1 cut(s) 66
AfiI CCNNNNNNNGG 3 cut(s) 28, 55, 142
AgsI TTSAA 1 cut(s) 227
AluBI AGCT 1 cut(s) 11
AluI AGCT 1 cut(s) 11
Alw26I GTCTC 3 cut(s) 26, 151, 227
AlwI GGATC 1 cut(s) 66
Aor13HI TCCGGA 1 cut(s) 127
ApeKI GCWGC 2 cut(s) 8, 103
AspLEI GCGC 1 cut(s) 135
AsuC2I CCSGG 1 cut(s) 66
AsuHPI GGTGA 3 cut(s) 53, 97, 203
BbvI GCAGC 2 cut(s) 20, 90
BceAI ACGGC 1 cut(s) 120
BcnI CCSGG 1 cut(s) 66
BcoDI GTCTC 3 cut(s) 26, 151, 227
BfaI CTAG 2 cut(s) 23, 250
BfmI CTRYAG 1 cut(s) 6
BfoI RGCGCY 1 cut(s) 136
BfuAI ACCTGC 1 cut(s) 43
BisI GCNGC 2 cut(s) 9, 104
BlsI GCNGC 2 cut(s) 10, 105
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BpuMI CCSGG 1 cut(s) 66
BsaI GGTCTC 1 cut(s) 151
BsaJI CCNNGG 2 cut(s) 64, 216
BsaWI WCCGGW 1 cut(s) 127
Bsc4I CCNNNNNNNGG 3 cut(s) 28, 55, 142
BseAI TCCGGA 1 cut(s) 127
BseDI CCNNGG 2 cut(s) 64, 216
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 3 cut(s) 28, 55, 142
BseXI GCAGC 2 cut(s) 20, 90
BsiSI CCGG 3 cut(s) 66, 128, 152
BslFI GGGAC 1 cut(s) 32
BslI CCNNNNNNNGG 3 cut(s) 28, 55, 142
BsmAI GTCTC 3 cut(s) 26, 151, 227
BsmFI GGGAC 1 cut(s) 32
Bso31I GGTCTC 1 cut(s) 151
Bsp13I TCCGGA 1 cut(s) 127
Bsp143I GATC 1 cut(s) 58
BspACI CCGC 2 cut(s) 50, 230
BspEI TCCGGA 1 cut(s) 127
BspMAI CTGCAG 1 cut(s) 10
BspMI ACCTGC 1 cut(s) 43
BspPI GGATC 1 cut(s) 66
BspTNI GGTCTC 1 cut(s) 151
BssECI CCNNGG 2 cut(s) 64, 216
BssMI GATC 1 cut(s) 58
BssT1I CCWWGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 136
BstHHI GCGC 1 cut(s) 135
BstKTI GATC 1 cut(s) 61
BstMAI GTCTC 3 cut(s) 26, 151, 227
BstMBI GATC 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 64
BstSFI CTRYAG 1 cut(s) 6
BstV1I GCAGC 2 cut(s) 20, 90
BtsCI GGATG 1 cut(s) 124
BveI ACCTGC 1 cut(s) 43
CfoI GCGC 1 cut(s) 135
CviJI RGCY 2 cut(s) 11, 21
CviKI_1 RGCY 2 cut(s) 11, 21
DpnI GATC 1 cut(s) 60
DpnII GATC 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 151
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaiI YATR 4 cut(s) 157, 159, 189, 245
FaqI GGGAC 1 cut(s) 32
FauI CCCGC 1 cut(s) 57
FauNDI CATATG 1 cut(s) 157
Fnu4HI GCNGC 2 cut(s) 9, 104
FokI GGATG 1 cut(s) 111
Fsp4HI GCNGC 2 cut(s) 9, 104
FspBI CTAG 2 cut(s) 23, 250
GlaI GCGC 1 cut(s) 134
GluI GCNGC 2 cut(s) 9, 104
HaeII RGCGCY 1 cut(s) 136
HapII CCGG 3 cut(s) 66, 128, 152
HhaI GCGC 1 cut(s) 135
Hin6I GCGC 1 cut(s) 133
HinP1I GCGC 1 cut(s) 133
HinfI GANTC 2 cut(s) 69, 194
HpaII CCGG 3 cut(s) 66, 128, 152
HphI GGTGA 3 cut(s) 53, 97, 203
Hpy188I TCNGA 1 cut(s) 74
Hpy188III TCNNGA 2 cut(s) 128, 177
Hpy99I CGWCG 1 cut(s) 78
HpyAV CCTTC 1 cut(s) 82
HpyCH4V TGCA 1 cut(s) 8
HspAI GCGC 1 cut(s) 133
Kpn2I TCCGGA 1 cut(s) 127
Kzo9I GATC 1 cut(s) 58
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 6 cut(s) 31, 38, 57, 79, 141, 165
Lsp1109I GCAGC 2 cut(s) 20, 90
MaeI CTAG 2 cut(s) 23, 250
MalI GATC 1 cut(s) 60
MboI GATC 1 cut(s) 58
MluCI AATT 1 cut(s) 36
MmeI TCCRAC 1 cut(s) 97
MnlI CCTC 2 cut(s) 71, 251
MroI TCCGGA 1 cut(s) 127
MspI CCGG 3 cut(s) 66, 128, 152
MspR9I CCNGG 1 cut(s) 66
NciI CCSGG 1 cut(s) 66
NdeI CATATG 1 cut(s) 157
NdeII GATC 1 cut(s) 58
PaqCI CACCTGC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 69, 194
PkrI GCNGC 2 cut(s) 10, 105
PstI CTGCAG 1 cut(s) 10
SatI GCNGC 2 cut(s) 9, 104
Sau3AI GATC 1 cut(s) 58
ScrFI CCNGG 1 cut(s) 66
SetI ASST 5 cut(s) 13, 46, 57, 82, 93
SfcI CTRYAG 1 cut(s) 6
Sse9I AATT 1 cut(s) 36
SsiI CCGC 2 cut(s) 50, 230
SspMI CTAG 2 cut(s) 23, 250
StyD4I CCNGG 1 cut(s) 64
StyI CCWWGG 1 cut(s) 216
TaqI TCGA 1 cut(s) 176
TasI AATT 1 cut(s) 36
TfiI GAWTC 2 cut(s) 69, 194
TseI GCWGC 2 cut(s) 8, 103
TspDTI ATGAA 1 cut(s) 113
XspI CTAG 2 cut(s) 23, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.