Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

15455391 .. 15471521

Gene Structure 16131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG151500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCCAATTATTGGAGATACTTTAGACTTGATGGGGATCCAATAAGACAAGAAGAGGGTGTTACCATCTGGTCCTTGCCGGAGACTACTGCAAAACCAACTCAGATCTCGGGCGTGTGGCTTCAGCGCGAGGAGGACACGGAGGAGACTGGTAAACAAGCTAAGCATAATTTGGCTCTGGTTCCTGTAGGCCTCCAACTTGAGGACTTAGGGCTGGCATTGTCTTCGGAGGGGATTTTTGCGGTGTCCATCACCTCAGCAGAGACTATAATGAGGAAAAGAGGCAGACCCCGTGGTCGGAGGAACAATCCTAAGCTCAAGCAGGGTGCTGATGGGAAGCAGCCGAAGTCCATGGCGACAAGCTTAGTGGATACTTATATGGTTACCCTTGCTGATGTTAGTGTGGAGCAGGAGACCCTTTCCCAGAAGGCTAGGGTTAGGGAAAGTAGCTTAGCATTGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

154

Amino Acids

17.14

Weight (kDa)

7.97

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	294
AccB7I	CCANNNNNTGG	1 cut(s)	12
AccII	CGCG	1 cut(s)	129
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	2 cut(s)	32, 45
AcoI	YGGCCR	1 cut(s)	3
AcuI	CTGAAG	1 cut(s)	107
AfiI	CCNNNNNNNGG	3 cut(s)	12, 202, 297
AluBI	AGCT	4 cut(s)	161, 316, 363, 450
AluI	AGCT	4 cut(s)	161, 316, 363, 450
Alw26I	GTCTC	4 cut(s)	77, 140, 257, 407
AlwI	GGATC	2 cut(s)	32, 45
Ama87I	CYCGRG	1 cut(s)	109
AoxI	GGCC	2 cut(s)	3, 190
ApeKI	GCWGC	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	129
AspS9I	GGNCC	1 cut(s)	72
AsuHPI	GGTGA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	109
AvaII	GGWCC	1 cut(s)	72
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	216
BbvCI	CCTCAGC	1 cut(s)	256
BbvI	GCAGC	1 cut(s)	352
BccI	CCATC	4 cut(s)	26, 74, 257, 326
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BciVI	GTATCC	1 cut(s)	364
BcoDI	GTCTC	4 cut(s)	77, 140, 257, 407
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	1 cut(s)	186
BfuI	GTATCC	1 cut(s)	364
BglII	AGATCT	1 cut(s)	105
BisI	GCNGC	1 cut(s)	341
BlpI	GCTNAGC	2 cut(s)	162, 451
BlsI	GCNGC	1 cut(s)	342
Bme18I	GGWCC	1 cut(s)	72
BmeT110I	CYCGRG	1 cut(s)	109
BmgT120I	GGNCC	1 cut(s)	72
BmiI	GGNNCC	2 cut(s)	39, 183
BpiI	GAAGAC	1 cut(s)	216
Bpu10I	CCTNAGC	2 cut(s)	256, 312
Bpu1102I	GCTNAGC	2 cut(s)	162, 451
BpuEI	CTTGAG	2 cut(s)	221, 302
BsaBI	GATNNNNATC	1 cut(s)	36
BsaI	GGTCTC	1 cut(s)	407
BsaJI	CCNNGG	2 cut(s)	292, 351
Bsc4I	CCNNNNNNNGG	3 cut(s)	12, 202, 297
Bse1I	ACTGG	1 cut(s)	154
Bse3DI	GCAATG	1 cut(s)	455
Bse8I	GATNNNNATC	1 cut(s)	36
BseDI	CCNNGG	2 cut(s)	292, 351
BseJI	GATNNNNATC	1 cut(s)	36
BseLI	CCNNNNNNNGG	3 cut(s)	12, 202, 297
BseMI	GCAATG	1 cut(s)	455
BseMII	CTCAG	2 cut(s)	116, 270
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	2 cut(s)	146, 158
BseXI	GCAGC	1 cut(s)	352
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	2 cut(s)	5, 192
BsiHKCI	CYCGRG	1 cut(s)	109
BsiSI	CCGG	1 cut(s)	80
BslI	CCNNNNNNNGG	3 cut(s)	12, 202, 297
BsmAI	GTCTC	4 cut(s)	77, 140, 257, 407
BsnI	GGCC	2 cut(s)	5, 192
Bso31I	GGTCTC	1 cut(s)	407
BsoBI	CYCGRG	1 cut(s)	109
Bsp143I	GATC	2 cut(s)	37, 105
Bsp1720I	GCTNAGC	2 cut(s)	162, 451
Bsp19I	CCATGG	1 cut(s)	351
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	5, 192
BspCNI	CTCAG	2 cut(s)	115, 269
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	39, 183
BspPI	GGATC	2 cut(s)	32, 45
BspTNI	GGTCTC	1 cut(s)	407
BsrDI	GCAATG	1 cut(s)	455
BsrI	ACTGG	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	292, 351
BssMI	GATC	2 cut(s)	37, 105
BssT1I	CCWWGG	1 cut(s)	351
Bst6I	CTCTTC	1 cut(s)	48
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	7 cut(s)	102, 162, 208, 256, 312, 364, 451
BstDSI	CCRYGG	2 cut(s)	292, 351
BstEII	GGTNACC	1 cut(s)	382
BstFNI	CGCG	1 cut(s)	129
BstHHI	GCGC	1 cut(s)	129
BstKTI	GATC	2 cut(s)	40, 108
BstMAI	GTCTC	4 cut(s)	77, 140, 257, 407
BstMBI	GATC	2 cut(s)	37, 105
BstPI	GGTNACC	1 cut(s)	382
BstSFI	CTRYAG	1 cut(s)	186
BstUI	CGCG	1 cut(s)	129
BstV1I	GCAGC	1 cut(s)	352
BstV2I	GAAGAC	1 cut(s)	216
BstX2I	RGATCY	2 cut(s)	37, 105
BstYI	RGATCY	2 cut(s)	37, 105
BsuI	GTATCC	1 cut(s)	364
BsuRI	GGCC	2 cut(s)	5, 192
BtgI	CCRYGG	2 cut(s)	292, 351
Cac8I	GCNNGC	1 cut(s)	216
CfoI	GCGC	1 cut(s)	129
Cfr13I	GGNCC	1 cut(s)	72
CspCI	CAANNNNNGTGG	2 cut(s)	348, 383
CviAII	CATG	1 cut(s)	352
DdeI	CTNAG	7 cut(s)	102, 162, 208, 256, 312, 364, 451
DpnI	GATC	2 cut(s)	39, 107
DpnII	GATC	2 cut(s)	37, 105
DrdI	GACNNNNNNGTC	1 cut(s)	294
DseDI	GACNNNNNNGTC	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	48
EarI	CTCTTC	1 cut(s)	48
Eco130I	CCWWGG	1 cut(s)	351
Eco147I	AGGCCT	1 cut(s)	192
Eco31I	GGTCTC	1 cut(s)	407
Eco47I	GGWCC	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	107
Eco88I	CYCGRG	1 cut(s)	109
Eco91I	GGTNACC	1 cut(s)	382
EcoO65I	GGTNACC	1 cut(s)	382
EcoT14I	CCWWGG	1 cut(s)	351
ErhI	CCWWGG	1 cut(s)	351
FaeI	CATG	1 cut(s)	355
FaiI	YATR	5 cut(s)	168, 269, 353, 378, 380
FatI	CATG	1 cut(s)	351
Fnu4HI	GCNGC	1 cut(s)	341
Fsp4HI	GCNGC	1 cut(s)	341
FspBI	CTAG	1 cut(s)	432
GlaI	GCGC	1 cut(s)	128
GluI	GCNGC	1 cut(s)	341
HaeIII	GGCC	2 cut(s)	5, 192
HapII	CCGG	1 cut(s)	80
HhaI	GCGC	1 cut(s)	129
Hin1II	CATG	1 cut(s)	355
Hin6I	GCGC	1 cut(s)	127
HinP1I	GCGC	1 cut(s)	127
HindIII	AAGCTT	1 cut(s)	361
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	244
Hpy166II	GTNNAC	1 cut(s)	155
Hpy188I	TCNGA	3 cut(s)	105, 229, 300
Hpy8I	GTNNAC	1 cut(s)	155
HpyAV	CCTTC	1 cut(s)	421
HpyCH4V	TGCA	1 cut(s)	92
HpyF3I	CTNAG	7 cut(s)	102, 162, 208, 256, 312, 364, 451
Hsp92II	CATG	1 cut(s)	355
HspAI	GCGC	1 cut(s)	127
Kzo9I	GATC	2 cut(s)	37, 105
LmnI	GCTCC	1 cut(s)	406
LpnPI	CCDG	9 cut(s)	55, 93, 135, 164, 198, 200, 308, 395, 437
Lsp1109I	GCAGC	1 cut(s)	352
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	2 cut(s)	61, 382
MalI	GATC	2 cut(s)	39, 107
MboI	GATC	2 cut(s)	37, 105
MboII	GAAGA	2 cut(s)	65, 216
MflI	RGATCY	2 cut(s)	37, 105
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	7, 169
MluNI	TGGCCA	1 cut(s)	5
MmeI	TCCRAC	2 cut(s)	220, 278
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	129
NcoI	CCATGG	1 cut(s)	351
NdeII	GATC	2 cut(s)	37, 105
NlaIII	CATG	1 cut(s)	355
NlaIV	GGNNCC	2 cut(s)	39, 183
PceI	AGGCCT	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	342
PspEI	GGTNACC	1 cut(s)	382
PspN4I	GGNNCC	2 cut(s)	39, 183
PspPI	GGNCC	1 cut(s)	72
PsuI	RGATCY	2 cut(s)	37, 105
SatI	GCNGC	1 cut(s)	341
Sau3AI	GATC	2 cut(s)	37, 105
Sau96I	GGNCC	1 cut(s)	72
SetI	ASST	5 cut(s)	163, 257, 318, 365, 452
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	72
SmlI	CTYRAG	2 cut(s)	200, 317
SmoI	CTYRAG	2 cut(s)	200, 317
Sse9I	AATT	2 cut(s)	7, 169
SseBI	AGGCCT	1 cut(s)	192
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	432
StuI	AGGCCT	1 cut(s)	192
StyI	CCWWGG	1 cut(s)	351
TasI	AATT	2 cut(s)	7, 169
TseI	GCWGC	1 cut(s)	340
TspGWI	ACGGA	1 cut(s)	155
Van91I	CCANNNNNTGG	1 cut(s)	12
VpaK11BI	GGWCC	1 cut(s)	72
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.