Rmu_sc0008709.1_g000004

Belongs to the oxygen-dependent FAD-linked oxidoreductase family

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008709.1
Physical Location & Seq
Forward (+)
11369 .. 11671
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008709.1_g000004.1.cds

Sequence Viewer

Length: 303 bp
atggctgcagtgatcgcctccatgactgccagacttgcaaccaagttatctctcaaggaaggagaagaaccagtggatttggggaatcttagggttccggggaaggagtttttggttcgcaatttctatttggtagggaggcttaacacttgcagggcgatggtgctggattcattccgcagtgctgtaagatcgatgtggaggttaacggggaccgtggaagtccagccaaggggagaacgatttatgtttactttcacccatgaaagggatgttgctcatgtgaagaacggaggtccatag

Protein Analysis

100

Amino Acids

11.24

Weight (kDa)

10.15

Isoelectric Point (pI)

25.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 178
AfiI CCNNNNNNNGG 3 cut(s) 232, 267, 268
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
ApeKI GCWGC 1 cut(s) 5
AspS9I GGNCC 2 cut(s) 213, 296
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 1 cut(s) 250
AvaII GGWCC 2 cut(s) 213, 296
BccI CCATC 1 cut(s) 154
BcnI CCSGG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 6
BisI GCNGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 7
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 2 cut(s) 213, 296
BmgT120I GGNCC 2 cut(s) 213, 296
BmiI GGNNCC 2 cut(s) 96, 214
BmrFI CCNGG 1 cut(s) 99
BpuEI CTTGAG 1 cut(s) 38
BpuMI CCSGG 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 194
BsaJI CCNNGG 3 cut(s) 98, 216, 230
Bsc4I CCNNNNNNNGG 3 cut(s) 232, 267, 268
Bse1I ACTGG 1 cut(s) 71
BseCI ATCGAT 1 cut(s) 194
BseDI CCNNGG 3 cut(s) 98, 216, 230
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 3 cut(s) 232, 267, 268
BseNI ACTGG 1 cut(s) 71
BshVI ATCGAT 1 cut(s) 194
BsiSI CCGG 1 cut(s) 98
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 3 cut(s) 232, 267, 268
BsmFI GGGAC 1 cut(s) 226
Bsp143I GATC 2 cut(s) 12, 191
BspACI CCGC 1 cut(s) 178
BspDI ATCGAT 1 cut(s) 194
BspLI GGNNCC 2 cut(s) 96, 214
BspMAI CTGCAG 1 cut(s) 10
BsrI ACTGG 1 cut(s) 71
BssECI CCNNGG 3 cut(s) 98, 216, 230
BssMI GATC 2 cut(s) 12, 191
BssT1I CCWWGG 1 cut(s) 230
Bst4CI ACNGT 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 89
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 1 cut(s) 277
BstKTI GATC 2 cut(s) 15, 194
BstMBI GATC 2 cut(s) 12, 191
BstMWI GCNNNNNNNGC 2 cut(s) 14, 35
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 6
Bsu15I ATCGAT 1 cut(s) 194
BsuTUI ATCGAT 1 cut(s) 194
BtgI CCRYGG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 173
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 2 cut(s) 15, 187
BtsIMutI CAGTG 3 cut(s) 15, 78, 187
Cfr13I GGNCC 2 cut(s) 213, 296
ClaI ATCGAT 1 cut(s) 194
CviAII CATG 3 cut(s) 22, 263, 281
CviJI RGCY 3 cut(s) 5, 142, 229
CviKI_1 RGCY 3 cut(s) 5, 142, 229
DdeI CTNAG 1 cut(s) 89
DpnI GATC 2 cut(s) 14, 193
DpnII GATC 2 cut(s) 12, 191
Eco130I CCWWGG 1 cut(s) 230
Eco47I GGWCC 2 cut(s) 213, 296
EcoT14I CCWWGG 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 230
FaeI CATG 3 cut(s) 25, 266, 284
FaiI YATR 5 cut(s) 23, 248, 264, 282, 301
FaqI GGGAC 1 cut(s) 226
FatI CATG 3 cut(s) 21, 262, 280
Fnu4HI GCNGC 1 cut(s) 6
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 6
GluI GCNGC 1 cut(s) 6
HapII CCGG 1 cut(s) 98
Hin1II CATG 3 cut(s) 25, 266, 284
HincII GTYRAC 1 cut(s) 207
HindII GTYRAC 1 cut(s) 207
HinfI GANTC 2 cut(s) 85, 170
HpaI GTTAAC 1 cut(s) 207
HpaII CCGG 1 cut(s) 98
HphI GGTGA 1 cut(s) 250
Hpy166II GTNNAC 2 cut(s) 207, 252
Hpy8I GTNNAC 2 cut(s) 207, 252
HpyAV CCTTC 2 cut(s) 53, 97
HpyCH4III ACNGT 1 cut(s) 217
HpyCH4V TGCA 3 cut(s) 8, 38, 153
HpyF10VI GCNNNNNNNGC 2 cut(s) 14, 35
HpyF3I CTNAG 1 cut(s) 89
Hsp92II CATG 3 cut(s) 25, 266, 284
KspAI GTTAAC 1 cut(s) 207
Kzo9I GATC 2 cut(s) 12, 191
LpnPI CCDG 6 cut(s) 43, 84, 111, 139, 152, 239
MalI GATC 2 cut(s) 14, 193
MboI GATC 2 cut(s) 12, 191
MboII GAAGA 2 cut(s) 77, 298
MluCI AATT 1 cut(s) 121
MnlI CCTC 4 cut(s) 28, 132, 195, 287
MseI TTAA 2 cut(s) 144, 206
MspI CCGG 1 cut(s) 98
MspR9I CCNGG 1 cut(s) 99
MwoI GCNNNNNNNGC 2 cut(s) 14, 35
NciI CCSGG 1 cut(s) 99
NdeII GATC 2 cut(s) 12, 191
NlaIII CATG 3 cut(s) 25, 266, 284
NlaIV GGNNCC 2 cut(s) 96, 214
PfeI GAWTC 2 cut(s) 85, 170
PkrI GCNGC 1 cut(s) 7
PspN4I GGNNCC 2 cut(s) 96, 214
PspPI GGNCC 2 cut(s) 213, 296
PstI CTGCAG 1 cut(s) 10
SaqAI TTAA 2 cut(s) 144, 206
SatI GCNGC 1 cut(s) 6
Sau3AI GATC 2 cut(s) 12, 191
Sau96I GGNCC 2 cut(s) 213, 296
ScrFI CCNGG 1 cut(s) 99
SetI ASST 2 cut(s) 206, 298
SfcI CTRYAG 1 cut(s) 6
SinI GGWCC 2 cut(s) 213, 296
SmlI CTYRAG 1 cut(s) 53
SmoI CTYRAG 1 cut(s) 53
Sse9I AATT 1 cut(s) 121
SsiI CCGC 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 97
StyI CCWWGG 1 cut(s) 230
TaaI ACNGT 1 cut(s) 217
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 121
TfiI GAWTC 2 cut(s) 85, 170
Tru1I TTAA 2 cut(s) 144, 206
Tru9I TTAA 2 cut(s) 144, 206
TscAI CASTG 3 cut(s) 15, 78, 187
TseI GCWGC 1 cut(s) 5
TspDTI ATGAA 2 cut(s) 162, 279
TspRI CASTG 3 cut(s) 15, 78, 187
VpaK11BI GGWCC 2 cut(s) 213, 296
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.