Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001547.1

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

57491 .. 58547

Gene Structure 1057 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001547.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

atgacagctcgacttgcgaccagattgtcgctcaaggatggtgaagagcatgtggatcttggcaaccttcttgcaaaccaattctttttggttggatggttgaacaacgctagggctgtgattctgggttcattccgaagcgcgatcctctctatgtggcggctctctatgccagtgaaggtgcaggctcttggagatcgcttcctttttacattcacaaatgaacgggacctgaacagattgaagaatggaggaccttgggctttccagagagcgatgatcctcctcaatgattacaatggcttctctgacattgttgttgtccctttagacttcatttggatctgggtggaagttctagggttgcagctggcgttgatgactgtagcgaccgaggagagtcgtgtctcgtcggcgaacgtatttaccttgcagtttcgctatgaacctctattgggccactgccgagattgcttaatgatcaaccattacggagctcggtgtctgcatgagctagaggaggaaagtgtgactgcagatgcctttatacctaaatttcccatccccaatccactgtgtaaggagaagaggggcatcaccattcatgctctttcggatggatctatggggcaggttagggtttctgggaatcgccttcaaagggaggaggaagatgaagtggatgggaagcgggtcaggcatgctttggcactggttatatcttctctccaccaagagaacatgggttttactgtgacgtcagaaagcctgtttgaggttactattacctcggaggggaagggcacgaagaagagagttagacctcatggaagccggaatatctccaagccaatggcaaagccttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

288

Amino Acids

32.45

Weight (kDa)

8.36

Isoelectric Point (pI)

34.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	25
AatII	GACGTC	1 cut(s)	761
Acc36I	ACCTGC	1 cut(s)	622
AccII	CGCG	1 cut(s)	143
AciI	CCGC	2 cut(s)	160, 691
AclWI	GGATC	5 cut(s)	63, 139, 274, 350, 628
AcsI	RAATTY	1 cut(s)	554
AcyI	GRCGYC	1 cut(s)	758
AfiI	CCNNNNNNNGG	4 cut(s)	455, 661, 775, 795
AgsI	TTSAA	3 cut(s)	103, 244, 659
AluBI	AGCT	4 cut(s)	8, 370, 497, 514
AluI	AGCT	4 cut(s)	8, 370, 497, 514
Alw21I	GWGCWC	1 cut(s)	499
Alw26I	GTCTC	1 cut(s)	412
AlwI	GGATC	5 cut(s)	63, 139, 274, 350, 628
AoxI	GGCC	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	367
ApoI	RAATTY	1 cut(s)	554
AspLEI	GCGC	1 cut(s)	143
AspS9I	GGNCC	3 cut(s)	229, 254, 457
AsuHPI	GGTGA	2 cut(s)	53, 589
AvaII	GGWCC	2 cut(s)	229, 254
BaeGI	GKGCMC	1 cut(s)	806
BanII	GRGCYC	1 cut(s)	499
Bbv12I	GWGCWC	1 cut(s)	499
BbvI	GCAGC	1 cut(s)	379
BccI	CCATC	5 cut(s)	32, 90, 569, 611, 677
BclI	TGATCA	1 cut(s)	480
BcoDI	GTCTC	1 cut(s)	412
BfaI	CTAG	3 cut(s)	111, 359, 515
BfmI	CTRYAG	2 cut(s)	384, 534
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	2 cut(s)	161, 368
BlsI	GCNGC	2 cut(s)	162, 369
Bme18I	GGWCC	2 cut(s)	229, 254
BmgT120I	GGNCC	3 cut(s)	229, 254, 457
BmiI	GGNNCC	1 cut(s)	230
BmsI	GCATC	2 cut(s)	529, 603
BpuEI	CTTGAG	1 cut(s)	17
BsaHI	GRCGYC	1 cut(s)	758
BsaJI	CCNNGG	3 cut(s)	257, 393, 789
Bsc4I	CCNNNNNNNGG	4 cut(s)	455, 661, 775, 795
Bse1I	ACTGG	2 cut(s)	173, 717
BseDI	CCNNGG	3 cut(s)	257, 393, 789
BseGI	GGATG	5 cut(s)	43, 101, 561, 622, 688
BseLI	CCNNNNNNNGG	4 cut(s)	455, 661, 775, 795
BseNI	ACTGG	2 cut(s)	173, 717
BseRI	GAGGAG	4 cut(s)	275, 410, 533, 680
BseSI	GKGCMC	1 cut(s)	806
BseXI	GCAGC	1 cut(s)	379
BsgI	GTGCAG	1 cut(s)	203
Bsh1236I	CGCG	1 cut(s)	143
Bsh1285I	CGRYCG	1 cut(s)	393
BshFI	GGCC	1 cut(s)	459
BsiEI	CGRYCG	1 cut(s)	393
BsiHKAI	GWGCWC	1 cut(s)	499
BsiSI	CCGG	1 cut(s)	835
BslFI	GGGAC	2 cut(s)	242, 308
BslI	CCNNNNNNNGG	4 cut(s)	455, 661, 775, 795
BsmAI	GTCTC	1 cut(s)	412
BsmFI	GGGAC	2 cut(s)	242, 308
BsnI	GGCC	1 cut(s)	459
Bsp1286I	GDGCHC	2 cut(s)	499, 806
Bsp143I	GATC	7 cut(s)	55, 144, 196, 279, 342, 480, 620
BspACI	CCGC	2 cut(s)	160, 691
BspANI	GGCC	1 cut(s)	459
BspFNI	CGCG	1 cut(s)	143
BspLI	GGNNCC	1 cut(s)	230
BspMAI	CTGCAG	1 cut(s)	538
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	5 cut(s)	63, 139, 274, 350, 628
BspQI	GCTCTTC	1 cut(s)	39
BsrI	ACTGG	2 cut(s)	173, 717
BssECI	CCNNGG	3 cut(s)	257, 393, 789
BssMI	GATC	7 cut(s)	55, 144, 196, 279, 342, 480, 620
BssNI	GRCGYC	1 cut(s)	758
BssT1I	CCWWGG	1 cut(s)	257
Bst4CI	ACNGT	3 cut(s)	385, 576, 754
Bst6I	CTCTTC	3 cut(s)	39, 581, 806
BstACI	GRCGYC	1 cut(s)	758
BstC8I	GCNNGC	3 cut(s)	186, 372, 702
BstDEI	CTNAG	1 cut(s)	864
BstENI	CCTNNNNNAGG	1 cut(s)	773
BstF5I	GGATG	5 cut(s)	43, 101, 561, 622, 688
BstFNI	CGCG	1 cut(s)	143
BstHHI	GCGC	1 cut(s)	143
BstKTI	GATC	7 cut(s)	58, 147, 199, 282, 345, 483, 623
BstMAI	GTCTC	1 cut(s)	412
BstMBI	GATC	7 cut(s)	55, 144, 196, 279, 342, 480, 620
BstMCI	CGRYCG	1 cut(s)	393
BstMWI	GCNNNNNNNGC	4 cut(s)	14, 169, 471, 697
BstNSI	RCATGY	2 cut(s)	53, 704
BstSFI	CTRYAG	2 cut(s)	384, 534
BstSLI	GKGCMC	1 cut(s)	806
BstUI	CGCG	1 cut(s)	143
BstV1I	GCAGC	1 cut(s)	379
BstX2I	RGATCY	3 cut(s)	55, 342, 620
BstXI	CCANNNNNNTGG	1 cut(s)	853
BstYI	RGATCY	3 cut(s)	55, 342, 620
BsuRI	GGCC	1 cut(s)	459
BtgZI	GCGATG	1 cut(s)	290
BtsCI	GGATG	5 cut(s)	43, 101, 561, 622, 688
BtsI	GCAGTG	1 cut(s)	460
BtsIMutI	CAGTG	4 cut(s)	180, 460, 572, 710
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	3 cut(s)	186, 372, 702
CfoI	GCGC	1 cut(s)	143
Cfr13I	GGNCC	3 cut(s)	229, 254, 457
CviAII	CATG	6 cut(s)	50, 509, 605, 701, 742, 827
DdeI	CTNAG	1 cut(s)	864
DpnI	GATC	7 cut(s)	57, 146, 198, 281, 344, 482, 622
DpnII	GATC	7 cut(s)	55, 144, 196, 279, 342, 480, 620
DrdI	GACNNNNNNGTC	1 cut(s)	25
DseDI	GACNNNNNNGTC	1 cut(s)	25
Eam1104I	CTCTTC	3 cut(s)	39, 581, 806
EarI	CTCTTC	3 cut(s)	39, 581, 806
Ecl136II	GAGCTC	1 cut(s)	497
Eco130I	CCWWGG	1 cut(s)	257
Eco24I	GRGCYC	1 cut(s)	499
Eco47I	GGWCC	2 cut(s)	229, 254
Eco53kI	GAGCTC	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	497
EcoNI	CCTNNNNNAGG	1 cut(s)	773
EcoO109I	RGGNCCY	2 cut(s)	229, 254
EcoT14I	CCWWGG	1 cut(s)	257
EcoT38I	GRGCYC	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	257
FaeI	CATG	6 cut(s)	53, 512, 608, 704, 745, 830
FaqI	GGGAC	2 cut(s)	242, 308
FatI	CATG	6 cut(s)	49, 508, 604, 700, 741, 826
FauI	CCCGC	1 cut(s)	684
FbaI	TGATCA	1 cut(s)	480
Fnu4HI	GCNGC	2 cut(s)	161, 368
FokI	GGATG	5 cut(s)	50, 108, 548, 629, 695
FriOI	GRGCYC	1 cut(s)	499
Fsp4HI	GCNGC	2 cut(s)	161, 368
FspBI	CTAG	3 cut(s)	111, 359, 515
GlaI	GCGC	1 cut(s)	142
GluI	GCNGC	2 cut(s)	161, 368
HaeIII	GGCC	1 cut(s)	459
HapII	CCGG	1 cut(s)	835
HhaI	GCGC	1 cut(s)	143
Hin1I	GRCGYC	1 cut(s)	758
Hin1II	CATG	6 cut(s)	53, 512, 608, 704, 745, 830
Hin6I	GCGC	1 cut(s)	141
HinP1I	GCGC	1 cut(s)	141
HinfI	GANTC	3 cut(s)	121, 400, 649
HpaII	CCGG	1 cut(s)	835
HphI	GGTGA	2 cut(s)	53, 589
Hpy188I	TCNGA	5 cut(s)	137, 310, 616, 763, 793
Hpy188III	TCNNGA	1 cut(s)	268
Hpy99I	CGWCG	1 cut(s)	415
HpyAV	CCTTC	4 cut(s)	77, 172, 665, 793
HpyCH4III	ACNGT	3 cut(s)	385, 576, 754
HpyCH4IV	ACGT	2 cut(s)	420, 758
HpyCH4V	TGCA	6 cut(s)	74, 184, 367, 433, 508, 536
HpyF10VI	GCNNNNNNNGC	4 cut(s)	14, 169, 471, 697
HpyF3I	CTNAG	1 cut(s)	864
HpySE526I	ACGT	2 cut(s)	420, 758
Hsp92I	GRCGYC	1 cut(s)	758
Hsp92II	CATG	6 cut(s)	53, 512, 608, 704, 745, 830
HspAI	GCGC	1 cut(s)	141
Ksp22I	TGATCA	1 cut(s)	480
Kzo9I	GATC	7 cut(s)	55, 144, 196, 279, 342, 480, 620
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	1 cut(s)	379
LweI	GCATC	2 cut(s)	529, 603
MaeI	CTAG	3 cut(s)	111, 359, 515
MaeII	ACGT	2 cut(s)	420, 758
MaeIII	GTNAC	3 cut(s)	529, 754, 778
MalI	GATC	7 cut(s)	57, 146, 198, 281, 344, 482, 622
MboI	GATC	7 cut(s)	55, 144, 196, 279, 342, 480, 620
MboII	GAAGA	7 cut(s)	56, 256, 598, 683, 714, 820, 823
MflI	RGATCY	3 cut(s)	55, 342, 620
MhlI	GDGCHC	2 cut(s)	499, 806
MluCI	AATT	2 cut(s)	80, 554
MlyI	GAGTC	1 cut(s)	409
MmeI	TCCRAC	1 cut(s)	73
MseI	TTAA	1 cut(s)	476
MspA1I	CMGCKG	1 cut(s)	370
MspI	CCGG	1 cut(s)	835
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	4 cut(s)	14, 169, 471, 697
NdeII	GATC	7 cut(s)	55, 144, 196, 279, 342, 480, 620
NlaIII	CATG	6 cut(s)	53, 512, 608, 704, 745, 830
NlaIV	GGNNCC	1 cut(s)	230
NmeAIII	GCCGAG	1 cut(s)	491
NmuCI	GTSAC	2 cut(s)	529, 754
NspI	RCATGY	2 cut(s)	53, 704
PaeI	GCATGC	1 cut(s)	704
PciSI	GCTCTTC	1 cut(s)	39
PfeI	GAWTC	2 cut(s)	121, 649
PkrI	GCNGC	2 cut(s)	162, 369
PleI	GAGTC	1 cut(s)	408
PpsI	GAGTC	1 cut(s)	408
PpuMI	RGGWCCY	2 cut(s)	229, 254
Psp124BI	GAGCTC	1 cut(s)	499
Psp5II	RGGWCCY	2 cut(s)	229, 254
PspN4I	GGNNCC	1 cut(s)	230
PspPI	GGNCC	3 cut(s)	229, 254, 457
PspPPI	RGGWCCY	2 cut(s)	229, 254
PstI	CTGCAG	1 cut(s)	538
PsuI	RGATCY	3 cut(s)	55, 342, 620
PvuII	CAGCTG	1 cut(s)	370
SacI	GAGCTC	1 cut(s)	499
SapI	GCTCTTC	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	476
SatI	GCNGC	2 cut(s)	161, 368
Sau3AI	GATC	7 cut(s)	55, 144, 196, 279, 342, 480, 620
Sau96I	GGNCC	3 cut(s)	229, 254, 457
SchI	GAGTC	1 cut(s)	409
SduI	GDGCHC	2 cut(s)	499, 806
SfaNI	GCATC	2 cut(s)	529, 603
SfcI	CTRYAG	2 cut(s)	384, 534
SinI	GGWCC	2 cut(s)	229, 254
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
SphI	GCATGC	1 cut(s)	704
Sse9I	AATT	2 cut(s)	80, 554
SsiI	CCGC	2 cut(s)	160, 691
SspMI	CTAG	3 cut(s)	111, 359, 515
SstI	GAGCTC	1 cut(s)	499
StyI	CCWWGG	1 cut(s)	257
TaaI	ACNGT	3 cut(s)	385, 576, 754
TaiI	ACGT	2 cut(s)	423, 761
TaqI	TCGA	1 cut(s)	10
TaqII	GACCGA	1 cut(s)	407
TasI	AATT	2 cut(s)	80, 554
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	2 cut(s)	121, 649
Tru1I	TTAA	1 cut(s)	476
Tru9I	TTAA	1 cut(s)	476
TscAI	CASTG	4 cut(s)	180, 467, 579, 717
TseFI	GTSAC	2 cut(s)	529, 754
TseI	GCWGC	1 cut(s)	367
Tsp45I	GTSAC	2 cut(s)	529, 754
TspDTI	ATGAA	6 cut(s)	120, 237, 325, 459, 593, 690
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	4 cut(s)	180, 467, 579, 717
VpaK11BI	GGWCC	2 cut(s)	229, 254
XagI	CCTNNNNNAGG	1 cut(s)	773
XapI	RAATTY	1 cut(s)	554
XceI	RCATGY	2 cut(s)	53, 704
XspI	CTAG	3 cut(s)	111, 359, 515
ZraI	GACGTC	1 cut(s)	759

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.