Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb1

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

12109474 .. 12109785

Gene Structure 312 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_1g19981.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGCCAGCTTTTCCCTCTCCATCTAAGATCACAAGGGTGCCTCAAGTAAGGGAAGATGAGAAGCATGAGGATGGTAAACGTCCCAAGCATGCGTTAGTAGTGATCATGCTCTCTTTGAATCTAGAAGACCTAGGTCTCTCTATTGCTATAGATGGTGGATTAGGGGTTGTTAGGAACAAGATGTCTCCAAAGAAGAAGGACAAGCCTCGCGGAAGCAAGAACACAAAATTGGTGCAAGGAGAGGCGTCGAGTTCTATAACATCGAGTTATGTGGAAGAGAAAGGCCTCGAGGCTGAGGCTATGGGAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

104

Amino Acids

11.17

Weight (kDa)

8.93

Isoelectric Point (pI)

56.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	287
AccB1I	GGYRCC	1 cut(s)	37
AccII	CGCG	1 cut(s)	210
AciI	CCGC	1 cut(s)	210
AcyI	GRCGYC	1 cut(s)	245
AgsI	TTSAA	1 cut(s)	118
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AleI	CACNNNNGTG	1 cut(s)	35
AluBI	AGCT	1 cut(s)	8
AluI	AGCT	1 cut(s)	8
Alw26I	GTCTC	2 cut(s)	140, 189
Ama87I	CYCGRG	1 cut(s)	287
AoxI	GGCC	1 cut(s)	283
AspA2I	CCTAGG	1 cut(s)	130
AvaI	CYCGRG	1 cut(s)	287
AvrII	CCTAGG	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	37
BbsI	GAAGAC	1 cut(s)	132
BbvCI	CCTCAGC	1 cut(s)	294
BccI	CCATC	3 cut(s)	28, 65, 146
BclI	TGATCA	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	140, 189
BfaI	CTAG	2 cut(s)	122, 131
BfmI	CTRYAG	1 cut(s)	147
BlnI	CCTAGG	1 cut(s)	130
BmeT110I	CYCGRG	1 cut(s)	287
BmiI	GGNNCC	1 cut(s)	39
BoxI	GACNNNNGTC	1 cut(s)	132
BpiI	GAAGAC	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	294
BpuEI	CTTGAG	1 cut(s)	27
BsaHI	GRCGYC	1 cut(s)	245
BsaI	GGTCTC	1 cut(s)	140
BsaJI	CCNNGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	130
BseGI	GGATG	1 cut(s)	76
BseMII	CTCAG	1 cut(s)	285
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	1 cut(s)	285
BshNI	GGYRCC	1 cut(s)	37
BsiHKCI	CYCGRG	1 cut(s)	287
BslFI	GGGAC	1 cut(s)	66
BsmAI	GTCTC	2 cut(s)	140, 189
BsmFI	GGGAC	1 cut(s)	66
BsnI	GGCC	1 cut(s)	285
Bso31I	GGTCTC	1 cut(s)	140
BsoBI	CYCGRG	1 cut(s)	287
Bsp143I	GATC	2 cut(s)	27, 102
BspACI	CCGC	1 cut(s)	210
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	1 cut(s)	39
BspT107I	GGYRCC	1 cut(s)	37
BspTNI	GGTCTC	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	27, 102
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	270
BstACI	GRCGYC	1 cut(s)	245
BstC8I	GCNNGC	2 cut(s)	6, 90
BstDEI	CTNAG	2 cut(s)	24, 294
BstF5I	GGATG	1 cut(s)	76
BstFNI	CGCG	1 cut(s)	210
BstKTI	GATC	2 cut(s)	30, 105
BstMAI	GTCTC	2 cut(s)	140, 189
BstMBI	GATC	2 cut(s)	27, 102
BstNSI	RCATGY	1 cut(s)	92
BstPAI	GACNNNNGTC	1 cut(s)	132
BstSFI	CTRYAG	1 cut(s)	147
BstUI	CGCG	1 cut(s)	210
BstV2I	GAAGAC	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	285
BtsCI	GGATG	1 cut(s)	76
Cac8I	GCNNGC	2 cut(s)	6, 90
CseI	GACGC	1 cut(s)	234
CviAII	CATG	3 cut(s)	65, 89, 106
CviJI	RGCY	5 cut(s)	8, 205, 285, 293, 299
CviKI_1	RGCY	5 cut(s)	8, 205, 285, 293, 299
DdeI	CTNAG	2 cut(s)	24, 294
DpnI	GATC	2 cut(s)	29, 104
DpnII	GATC	2 cut(s)	27, 102
Eam1104I	CTCTTC	1 cut(s)	270
EarI	CTCTTC	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	130
Eco147I	AGGCCT	1 cut(s)	285
Eco31I	GGTCTC	1 cut(s)	140
Eco88I	CYCGRG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	130
FaeI	CATG	3 cut(s)	68, 92, 109
FaiI	YATR	7 cut(s)	66, 90, 107, 149, 257, 270, 302
FaqI	GGGAC	1 cut(s)	66
FatI	CATG	3 cut(s)	64, 88, 105
FbaI	TGATCA	1 cut(s)	102
FokI	GGATG	1 cut(s)	83
FspBI	CTAG	2 cut(s)	122, 131
HaeIII	GGCC	1 cut(s)	285
HgaI	GACGC	1 cut(s)	234
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	3 cut(s)	68, 92, 109
HinfI	GANTC	1 cut(s)	118
Hpy166II	GTNNAC	1 cut(s)	77
Hpy188III	TCNNGA	1 cut(s)	122
Hpy8I	GTNNAC	1 cut(s)	77
Hpy99I	CGWCG	1 cut(s)	250
HpyAV	CCTTC	1 cut(s)	190
HpyCH4IV	ACGT	1 cut(s)	79
HpyCH4V	TGCA	1 cut(s)	235
HpyF3I	CTNAG	2 cut(s)	24, 294
HpySE526I	ACGT	1 cut(s)	79
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	3 cut(s)	68, 92, 109
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	27, 102
LpnPI	CCDG	1 cut(s)	18
MaeI	CTAG	2 cut(s)	122, 131
MaeII	ACGT	1 cut(s)	79
MalI	GATC	2 cut(s)	29, 104
MboI	GATC	2 cut(s)	27, 102
MboII	GAAGA	4 cut(s)	65, 137, 205, 287
MluCI	AATT	1 cut(s)	227
MnlI	CCTC	8 cut(s)	25, 51, 61, 216, 235, 283, 289, 296
MslI	CAYNNNNRTG	2 cut(s)	35, 69
MvnI	CGCG	1 cut(s)	210
NdeII	GATC	2 cut(s)	27, 102
NlaIII	CATG	3 cut(s)	68, 92, 109
NlaIV	GGNNCC	1 cut(s)	39
NspI	RCATGY	1 cut(s)	92
OliI	CACNNNNGTG	1 cut(s)	35
PaeI	GCATGC	1 cut(s)	92
PaeR7I	CTCGAG	1 cut(s)	287
PceI	AGGCCT	1 cut(s)	285
PfeI	GAWTC	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	39
PspXI	VCTCGAGB	1 cut(s)	287
RseI	CAYNNNNRTG	2 cut(s)	35, 69
Sau3AI	GATC	2 cut(s)	27, 102
SetI	ASST	4 cut(s)	10, 82, 132, 136
SfcI	CTRYAG	1 cut(s)	147
Sfr274I	CTCGAG	1 cut(s)	287
SlaI	CTCGAG	1 cut(s)	287
SmiMI	CAYNNNNRTG	2 cut(s)	35, 69
SmlI	CTYRAG	2 cut(s)	42, 287
SmoI	CTYRAG	2 cut(s)	42, 287
SphI	GCATGC	1 cut(s)	92
Sse9I	AATT	1 cut(s)	227
SseBI	AGGCCT	1 cut(s)	285
SsiI	CCGC	1 cut(s)	210
SspMI	CTAG	2 cut(s)	122, 131
StuI	AGGCCT	1 cut(s)	285
StyI	CCWWGG	1 cut(s)	130
TaiI	ACGT	1 cut(s)	82
TaqI	TCGA	3 cut(s)	248, 263, 288
TasI	AATT	1 cut(s)	227
TfiI	GAWTC	1 cut(s)	118
XbaI	TCTAGA	1 cut(s)	121
XceI	RCATGY	1 cut(s)	92
XhoI	CTCGAG	1 cut(s)	287
XmaJI	CCTAGG	1 cut(s)	130
XspI	CTAG	2 cut(s)	122, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.