Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

25333997 .. 25334491

Gene Structure 495 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011240.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCAGCAGCTATTGCTTCCATGATAGCCAAGCTAGCGACCAAGTTGTCGCTCAGAGAGGGTGAGGAACCGGTTGACCTGGGAAACCTTAGGGTTCCGGAGAAGGAATTTCTCGCTCGCCATTTCTACTTGGTGGGGAAGCTCAACACTTGTAGGGCGGTGGTTTTGGATTCTTTTAGGAGCGCGGTGTGTTCAATGTGGAGATTGATGGGGACTGTGGAGGTTCTACCACGTGGGGATCGTTTTCTGTTTACGTGCACTCTTGAATGTGATGTCGCTCGGGTAAAGAAGGGAGGCCCTTGGAGTTTTCAGTGGGCTATGCTTTTGTTGAATGACTACAATGGCTTTTCAGTGATTGATGCGGTGAAGCTTGACTTTGTTTGGATCTGGGTTGGGATCCATGGCCTTCCACTGGGTATCTTGACGGAACCCACTGTCCGGCTGGTGGGCGGCACGATCGGTGAGGTTTTGGAGGTTGATCAACCGACTATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

164

Amino Acids

18.21

Weight (kDa)

6.12

Isoelectric Point (pI)

25.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AccII	CGCG	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	97
AciI	CCGC	4 cut(s)	158, 185, 362, 450
AclWI	GGATC	4 cut(s)	246, 391, 392, 404
AcsI	RAATTY	1 cut(s)	107
AcvI	CACGTG	1 cut(s)	233
AfiI	CCNNNNNNNGG	3 cut(s)	412, 438, 445
AgeI	ACCGGT	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	195, 266, 331
AjnI	CCWGG	1 cut(s)	78
AloI	GAACNNNNNNTCC	2 cut(s)	420, 452
AluBI	AGCT	4 cut(s)	11, 34, 142, 370
AluI	AGCT	4 cut(s)	11, 34, 142, 370
Alw21I	GWGCWC	1 cut(s)	260
Alw44I	GTGCAC	1 cut(s)	256
AlwI	GGATC	4 cut(s)	246, 391, 392, 404
Ama87I	CYCGRG	1 cut(s)	279
Aor13HI	TCCGGA	1 cut(s)	97
AoxI	GGCC	2 cut(s)	295, 403
ApaLI	GTGCAC	1 cut(s)	256
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	1 cut(s)	107
AsiGI	ACCGGT	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	3 cut(s)	74, 376, 473
AsuNHI	GCTAGC	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	279
AxyI	CCTNAGG	1 cut(s)	89
BaeGI	GKGCMC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	396
BbrPI	CACGTG	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	17, 20
BccI	CCATC	1 cut(s)	202
BciT130I	CCWGG	1 cut(s)	80
BclI	TGATCA	1 cut(s)	478
BfaI	CTAG	1 cut(s)	35
BisI	GCNGC	3 cut(s)	6, 9, 451
BlsI	GCNGC	3 cut(s)	7, 10, 452
Bme1390I	CCNGG	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	279
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	4 cut(s)	69, 96, 398, 429
BmrFI	CCNGG	1 cut(s)	80
BmrI	ACTGGG	1 cut(s)	422
BmsI	GCATC	1 cut(s)	349
BmtI	GCTAGC	1 cut(s)	38
BmuI	ACTGGG	1 cut(s)	422
BsaAI	YACGTR	2 cut(s)	233, 255
BsaJI	CCNNGG	3 cut(s)	79, 299, 400
BsaWI	WCCGGW	2 cut(s)	70, 97
Bsc4I	CCNNNNNNNGG	3 cut(s)	412, 438, 445
Bse118I	RCCGGY	1 cut(s)	70
Bse1I	ACTGG	1 cut(s)	417
Bse21I	CCTNAGG	1 cut(s)	89
BseAI	TCCGGA	1 cut(s)	97
BseBI	CCWGG	1 cut(s)	80
BseDI	CCNNGG	3 cut(s)	79, 299, 400
BseLI	CCNNNNNNNGG	3 cut(s)	412, 438, 445
BseMII	CTCAG	1 cut(s)	67
BseNI	ACTGG	1 cut(s)	417
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	17, 20
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	459
BshFI	GGCC	2 cut(s)	297, 405
BshTI	ACCGGT	1 cut(s)	70
BsiEI	CGRYCG	1 cut(s)	459
BsiHKAI	GWGCWC	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	279
BsiSI	CCGG	3 cut(s)	71, 98, 439
BslFI	GGGAC	1 cut(s)	226
BslI	CCNNNNNNNGG	3 cut(s)	412, 438, 445
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	297, 405
BsoBI	CYCGRG	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp13I	TCCGGA	1 cut(s)	97
Bsp143I	GATC	5 cut(s)	238, 384, 396, 456, 478
Bsp19I	CCATGG	1 cut(s)	400
BspACI	CCGC	4 cut(s)	158, 185, 362, 450
BspANI	GGCC	2 cut(s)	297, 405
BspCNI	CTCAG	1 cut(s)	66
BspEI	TCCGGA	1 cut(s)	97
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	4 cut(s)	69, 96, 398, 429
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	4 cut(s)	246, 391, 392, 404
BsrFI	RCCGGY	1 cut(s)	70
BsrI	ACTGG	1 cut(s)	417
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	79, 299, 400
BssMI	GATC	5 cut(s)	238, 384, 396, 456, 478
BssT1I	CCWWGG	2 cut(s)	299, 400
Bst2UI	CCWGG	1 cut(s)	80
Bst4CI	ACNGT	2 cut(s)	217, 436
BstAPI	GCANNNNNTGC	1 cut(s)	14
BstBAI	YACGTR	2 cut(s)	233, 255
BstC8I	GCNNGC	2 cut(s)	36, 118
BstDEI	CTNAG	2 cut(s)	53, 89
BstDSI	CCRYGG	1 cut(s)	400
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	5 cut(s)	241, 387, 399, 459, 481
BstMBI	GATC	5 cut(s)	238, 384, 396, 456, 478
BstMCI	CGRYCG	1 cut(s)	459
BstMWI	GCNNNNNNNGC	2 cut(s)	14, 35
BstNI	CCWGG	1 cut(s)	80
BstSCI	CCNGG	1 cut(s)	78
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	2 cut(s)	17, 20
BstX2I	RGATCY	2 cut(s)	384, 396
BstYI	RGATCY	2 cut(s)	384, 396
Bsu36I	CCTNAGG	1 cut(s)	89
BsuRI	GGCC	2 cut(s)	297, 405
BtgI	CCRYGG	1 cut(s)	400
BtsIMutI	CAGTG	4 cut(s)	317, 357, 410, 432
Cac8I	GCNNGC	2 cut(s)	36, 118
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	296
CspAI	ACCGGT	1 cut(s)	70
CviAII	CATG	2 cut(s)	22, 401
DdeI	CTNAG	2 cut(s)	53, 89
DpnI	GATC	5 cut(s)	240, 386, 398, 458, 480
DpnII	GATC	5 cut(s)	238, 384, 396, 456, 478
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eco130I	CCWWGG	2 cut(s)	299, 400
Eco72I	CACGTG	1 cut(s)	233
Eco81I	CCTNAGG	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	296
EcoRII	CCWGG	1 cut(s)	78
EcoT14I	CCWWGG	2 cut(s)	299, 400
ErhI	CCWWGG	2 cut(s)	299, 400
FaeI	CATG	2 cut(s)	25, 404
FaiI	YATR	3 cut(s)	23, 320, 402
FalI	AAGNNNNNCTT	2 cut(s)	359, 391
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	2 cut(s)	21, 400
FbaI	TGATCA	1 cut(s)	478
Fnu4HI	GCNGC	3 cut(s)	6, 9, 451
Fsp4HI	GCNGC	3 cut(s)	6, 9, 451
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	3 cut(s)	6, 9, 451
HaeIII	GGCC	2 cut(s)	297, 405
HapII	CCGG	3 cut(s)	71, 98, 439
HhaI	GCGC	1 cut(s)	185
Hin1II	CATG	2 cut(s)	25, 404
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	1 cut(s)	170
HpaII	CCGG	3 cut(s)	71, 98, 439
HphI	GGTGA	3 cut(s)	74, 376, 473
Hpy166II	GTNNAC	3 cut(s)	76, 252, 258
Hpy188I	TCNGA	2 cut(s)	56, 494
Hpy188III	TCNNGA	3 cut(s)	98, 263, 421
Hpy8I	GTNNAC	3 cut(s)	76, 252, 258
HpyAV	CCTTC	3 cut(s)	97, 283, 416
HpyCH4III	ACNGT	2 cut(s)	217, 436
HpyCH4IV	ACGT	2 cut(s)	232, 254
HpyCH4V	TGCA	1 cut(s)	258
HpyF10VI	GCNNNNNNNGC	2 cut(s)	14, 35
HpyF3I	CTNAG	2 cut(s)	53, 89
HpySE526I	ACGT	2 cut(s)	232, 254
Hsp92II	CATG	2 cut(s)	25, 404
HspAI	GCGC	1 cut(s)	183
Kpn2I	TCCGGA	1 cut(s)	97
Ksp22I	TGATCA	1 cut(s)	478
Kzo9I	GATC	5 cut(s)	238, 384, 396, 456, 478
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	8 cut(s)	65, 84, 92, 111, 373, 398, 428, 452
Lsp1109I	GCAGC	2 cut(s)	17, 20
LweI	GCATC	1 cut(s)	349
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	2 cut(s)	232, 254
MalI	GATC	5 cut(s)	240, 386, 398, 458, 480
MboI	GATC	5 cut(s)	238, 384, 396, 456, 478
MflI	RGATCY	2 cut(s)	384, 396
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	1 cut(s)	107
MnlI	CCTC	6 cut(s)	52, 58, 214, 287, 457, 466
MroI	TCCGGA	1 cut(s)	97
MspI	CCGG	3 cut(s)	71, 98, 439
MspR9I	CCNGG	1 cut(s)	80
MvaI	CCWGG	1 cut(s)	80
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	2 cut(s)	14, 35
NcoI	CCATGG	1 cut(s)	400
NdeII	GATC	5 cut(s)	238, 384, 396, 456, 478
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	2 cut(s)	25, 404
NlaIV	GGNNCC	4 cut(s)	69, 96, 398, 429
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PfeI	GAWTC	1 cut(s)	170
PinAI	ACCGGT	1 cut(s)	70
PkrI	GCNGC	3 cut(s)	7, 10, 452
Ple19I	CGATCG	1 cut(s)	459
PmaCI	CACGTG	1 cut(s)	233
PmlI	CACGTG	1 cut(s)	233
Ppu21I	YACGTR	2 cut(s)	233, 255
Psp6I	CCWGG	1 cut(s)	78
PspCI	CACGTG	1 cut(s)	233
PspGI	CCWGG	1 cut(s)	78
PspN4I	GGNNCC	4 cut(s)	69, 96, 398, 429
PspPI	GGNCC	1 cut(s)	296
PsuI	RGATCY	2 cut(s)	384, 396
PvuI	CGATCG	1 cut(s)	459
SatI	GCNGC	3 cut(s)	6, 9, 451
Sau3AI	GATC	5 cut(s)	238, 384, 396, 456, 478
Sau96I	GGNCC	1 cut(s)	296
ScrFI	CCNGG	1 cut(s)	80
SduI	GDGCHC	1 cut(s)	260
SfaNI	GCATC	1 cut(s)	349
Sse9I	AATT	1 cut(s)	107
SsiI	CCGC	4 cut(s)	158, 185, 362, 450
SspMI	CTAG	1 cut(s)	35
StyD4I	CCNGG	1 cut(s)	78
StyI	CCWWGG	2 cut(s)	299, 400
TaaI	ACNGT	2 cut(s)	217, 436
TaiI	ACGT	2 cut(s)	235, 257
TasI	AATT	1 cut(s)	107
TauI	GCSGC	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	170
TscAI	CASTG	4 cut(s)	317, 357, 417, 439
TseI	GCWGC	2 cut(s)	5, 8
TspGWI	ACGGA	1 cut(s)	440
TspRI	CASTG	4 cut(s)	317, 357, 417, 439
VneI	GTGCAC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	439
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.