Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0019960.1

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

1621 .. 2359

Gene Structure 739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0019960.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

atggctgcagcgatcgcatccatgactgccagacttgcgactaaactgtcgctcaaggagggagaagaaccagttgatttggggaatctccgagttcaggggaaagagtttttggctcggaatttctatttggtaggaaggctcaatacttgcagggggctgatgctggattcattccggagcgcggtaagatctatgtggaggttgactggaaccgtggaggtacaaccaaggggtgaccgttttctgtttacattcacccatgacagggatgttgctagagtaaagaagggaggaccgtggggtttccaaaacacttggtttcccactgcaataagaaaaggaaacacctttattcaagaaattgccactcttttattggcactcattgcagacgtcacggcttacgccattgattggcaaaacgacagggaagagattggcaagagatcaatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

152

Amino Acids

17.2

Weight (kDa)

9.9

Isoelectric Point (pI)

27.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AatII	GACGTC	1 cut(s)	399
AccB7I	CCANNNNNTGG	1 cut(s)	417
AccII	CGCG	1 cut(s)	185
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	121
AcyI	GRCGYC	1 cut(s)	396
AfaI	GTAC	1 cut(s)	225
AfiI	CCNNNNNNNGG	5 cut(s)	97, 184, 267, 268, 417
AgsI	TTSAA	1 cut(s)	359
AjuI	GAANNNNNNNTTGG	4 cut(s)	95, 113, 127, 145
Aor13HI	TCCGGA	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	1 cut(s)	121
AsiSI	GCGATCGC	1 cut(s)	15
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	1 cut(s)	296
AsuHPI	GGTGA	2 cut(s)	248, 250
AvaII	GGWCC	1 cut(s)	296
BarI	GAAGNNNNNNTAC	2 cut(s)	130, 162
BbvI	GCAGC	1 cut(s)	20
BceAI	ACGGC	1 cut(s)	417
BfaI	CTAG	1 cut(s)	279
BfmI	CTRYAG	1 cut(s)	6
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme18I	GGWCC	1 cut(s)	296
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	1 cut(s)	214
BmsI	GCATC	2 cut(s)	26, 153
BpuEI	CTTGAG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	396
BsaJI	CCNNGG	3 cut(s)	216, 230, 299
BsaWI	WCCGGW	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	5 cut(s)	97, 184, 267, 268, 417
Bse1I	ACTGG	2 cut(s)	71, 214
Bse3DI	GCAATG	1 cut(s)	387
BseAI	TCCGGA	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	216, 230, 299
BseGI	GGATG	2 cut(s)	17, 277
BseLI	CCNNNNNNNGG	5 cut(s)	97, 184, 267, 268, 417
BseMI	GCAATG	1 cut(s)	387
BseNI	ACTGG	2 cut(s)	71, 214
BseXI	GCAGC	1 cut(s)	20
Bsh1236I	CGCG	1 cut(s)	185
Bsh1285I	CGRYCG	1 cut(s)	15
BsiEI	CGRYCG	1 cut(s)	15
BsiSI	CCGG	1 cut(s)	178
BslI	CCNNNNNNNGG	5 cut(s)	97, 184, 267, 268, 417
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	12, 191, 449
BspACI	CCGC	1 cut(s)	185
BspEI	TCCGGA	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	185
BspLI	GGNNCC	1 cut(s)	214
BspMAI	CTGCAG	1 cut(s)	10
BsrDI	GCAATG	1 cut(s)	387
BsrI	ACTGG	2 cut(s)	71, 214
BssECI	CCNNGG	3 cut(s)	216, 230, 299
BssMI	GATC	3 cut(s)	12, 191, 449
BssNI	GRCGYC	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	230
Bst4CI	ACNGT	4 cut(s)	48, 217, 242, 300
Bst6I	CTCTTC	1 cut(s)	429
BstACI	GRCGYC	1 cut(s)	396
BstAPI	GCANNNNNTGC	1 cut(s)	389
BstDSI	CCRYGG	2 cut(s)	216, 299
BstEII	GGTNACC	1 cut(s)	236
BstF5I	GGATG	2 cut(s)	17, 277
BstFNI	CGCG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	3 cut(s)	15, 194, 452
BstMBI	GATC	3 cut(s)	12, 191, 449
BstMCI	CGRYCG	1 cut(s)	15
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 35, 389
BstPI	GGTNACC	1 cut(s)	236
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	185
BstV1I	GCAGC	1 cut(s)	20
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BtgI	CCRYGG	2 cut(s)	216, 299
BtsCI	GGATG	2 cut(s)	17, 277
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
CfoI	GCGC	1 cut(s)	185
Cfr13I	GGNCC	1 cut(s)	296
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	2 cut(s)	22, 263
CviJI	RGCY	5 cut(s)	5, 116, 142, 160, 404
CviKI_1	RGCY	5 cut(s)	5, 116, 142, 160, 404
CviQI	GTAC	1 cut(s)	224
DpnI	GATC	3 cut(s)	14, 193, 451
DpnII	GATC	3 cut(s)	12, 191, 449
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	429
EarI	CTCTTC	1 cut(s)	429
Eco130I	CCWWGG	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	296
Eco91I	GGTNACC	1 cut(s)	236
EcoO65I	GGTNACC	1 cut(s)	236
EcoT14I	CCWWGG	1 cut(s)	230
ErhI	CCWWGG	1 cut(s)	230
FaeI	CATG	2 cut(s)	25, 266
FaiI	YATR	3 cut(s)	23, 197, 264
FatI	CATG	2 cut(s)	21, 262
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	2 cut(s)	4, 284
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	2 cut(s)	6, 9
HapII	CCGG	1 cut(s)	178
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	2 cut(s)	25, 266
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HincII	GTYRAC	1 cut(s)	207
HindII	GTYRAC	1 cut(s)	207
HinfI	GANTC	2 cut(s)	85, 170
HpaII	CCGG	1 cut(s)	178
HphI	GGTGA	2 cut(s)	248, 250
Hpy166II	GTNNAC	2 cut(s)	207, 252
Hpy188I	TCNGA	2 cut(s)	92, 120
Hpy188III	TCNNGA	2 cut(s)	178, 359
Hpy8I	GTNNAC	2 cut(s)	207, 252
HpyAV	CCTTC	2 cut(s)	132, 283
HpyCH4III	ACNGT	4 cut(s)	48, 217, 242, 300
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	4 cut(s)	8, 153, 332, 392
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 35, 389
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	2 cut(s)	25, 266
HspAI	GCGC	1 cut(s)	183
Kpn2I	TCCGGA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	12, 191, 449
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	9 cut(s)	43, 83, 84, 139, 152, 191, 195, 253, 415
Lsp1109I	GCAGC	1 cut(s)	20
LweI	GCATC	2 cut(s)	26, 153
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	2 cut(s)	236, 397
MalI	GATC	3 cut(s)	14, 193, 451
MboI	GATC	3 cut(s)	12, 191, 449
MboII	GAAGA	2 cut(s)	77, 446
MflI	RGATCY	1 cut(s)	191
MluCI	AATT	2 cut(s)	121, 363
MnlI	CCTC	4 cut(s)	52, 195, 214, 287
MroI	TCCGGA	1 cut(s)	177
MspI	CCGG	1 cut(s)	178
MvnI	CGCG	1 cut(s)	185
MwoI	GCNNNNNNNGC	3 cut(s)	14, 35, 389
NdeII	GATC	3 cut(s)	12, 191, 449
NlaIII	CATG	2 cut(s)	25, 266
NlaIV	GGNNCC	1 cut(s)	214
NmuCI	GTSAC	2 cut(s)	236, 397
PfeI	GAWTC	2 cut(s)	85, 170
PflMI	CCANNNNNTGG	1 cut(s)	417
PkrI	GCNGC	2 cut(s)	7, 10
Ple19I	CGATCG	1 cut(s)	15
PspEI	GGTNACC	1 cut(s)	236
PspN4I	GGNNCC	1 cut(s)	214
PspPI	GGNCC	1 cut(s)	296
PstI	CTGCAG	1 cut(s)	10
PsuI	RGATCY	1 cut(s)	191
PvuI	CGATCG	1 cut(s)	15
RgaI	GCGATCGC	1 cut(s)	15
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	3 cut(s)	12, 191, 449
Sau96I	GGNCC	1 cut(s)	296
SetI	ASST	4 cut(s)	206, 225, 353, 399
SfaAI	GCGATCGC	1 cut(s)	15
SfaNI	GCATC	2 cut(s)	26, 153
SfcI	CTRYAG	1 cut(s)	6
SgfI	GCGATCGC	1 cut(s)	15
SinI	GGWCC	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	2 cut(s)	121, 363
SsiI	CCGC	1 cut(s)	185
SspMI	CTAG	1 cut(s)	279
StyI	CCWWGG	1 cut(s)	230
TaaI	ACNGT	4 cut(s)	48, 217, 242, 300
TaiI	ACGT	1 cut(s)	399
TasI	AATT	2 cut(s)	121, 363
TfiI	GAWTC	2 cut(s)	85, 170
TscAI	CASTG	1 cut(s)	334
TseFI	GTSAC	2 cut(s)	236, 397
TseI	GCWGC	2 cut(s)	5, 8
Tsp45I	GTSAC	2 cut(s)	236, 397
TspDTI	ATGAA	1 cut(s)	162
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	417
VpaK11BI	GGWCC	1 cut(s)	296
XapI	RAATTY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	376
XspI	CTAG	1 cut(s)	279
ZraI	GACGTC	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.