FvH4_7g00911

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0000172
Physical Location & Seq
Reverse (-)
1374404 .. 1374862
459 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g00911.t1

Sequence Viewer

Length: 459 bp
ATGGCAGTGCCGCTTGATTTTATCTGGATGTGGGTTGAAATCTGTGACCTGCAGCTACCGACAACCCTAACTACTAACGCCACGATGCGGTTGATTGGAAAAACCATAGGGTCGCTTCTTCAAGTGGATCATATGAGTCTGAGGAATGGTGTGGCTCGCGTGCGCATCACGCTACCGCTAAATGACCTTGTTCGTTTGGATCGCATGCTTAGGGTTTTGTCGGAGGATGTTATCCACATTCAGTACAGGTATGAAAGACTTGTTGATCGCTGCAGGGACTGTATGATGTTGAATCATGACGGACTAGCTTGCCCTAGATCTCTCGAGACGTCAGCGGACCAAGGAATGCAGTCGGAGACTGCGGTGGTTACTGTTGCACCCCCTATTGTTTTTAGGGCTAGCGTGCAACATACCCTAGTGGTTCTGCCTCTCCCTTCTATGTTTCACAACGAAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

153

Amino Acids

17.3

Weight (kDa)

6.5

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCHC_4 PF14392 68 - 105 6.2e-06 Zinc knuckle
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 332
Acc16I TGCGCA 1 cut(s) 164
Acc36I ACCTGC 1 cut(s) 57
AccII CGCG 1 cut(s) 159
AciI CCGC 5 cut(s) 11, 88, 176, 335, 362
AclWI GGATC 2 cut(s) 135, 207
AcyI GRCGYC 1 cut(s) 329
AfaI GTAC 1 cut(s) 245
AfiI CCNNNNNNNGG 1 cut(s) 87
AgsI TTSAA 3 cut(s) 38, 122, 292
AluBI AGCT 2 cut(s) 55, 308
AluI AGCT 2 cut(s) 55, 308
Alw26I GTCTC 2 cut(s) 320, 350
AlwI GGATC 2 cut(s) 135, 207
AlwNI CAGNNNCTG 1 cut(s) 279
Ama87I CYCGRG 1 cut(s) 323
ApeKI GCWGC 2 cut(s) 52, 270
AspLEI GCGC 1 cut(s) 165
AspS9I GGNCC 1 cut(s) 337
AsuNHI GCTAGC 1 cut(s) 398
AvaI CYCGRG 1 cut(s) 323
AvaII GGWCC 1 cut(s) 337
BbvI GCAGC 2 cut(s) 64, 257
BcoDI GTCTC 2 cut(s) 320, 350
BfaI CTAG 4 cut(s) 305, 315, 399, 416
BfmI CTRYAG 2 cut(s) 50, 271
BfuAI ACCTGC 1 cut(s) 57
BglII AGATCT 1 cut(s) 317
BisI GCNGC 3 cut(s) 11, 53, 271
BlsI GCNGC 3 cut(s) 12, 54, 272
Bme18I GGWCC 1 cut(s) 337
BmeT110I CYCGRG 1 cut(s) 323
BmgT120I GGNCC 1 cut(s) 337
BmsI GCATC 2 cut(s) 75, 174
BmtI GCTAGC 1 cut(s) 402
Bpu10I CCTNAGC 1 cut(s) 209
BsaHI GRCGYC 1 cut(s) 329
BsaJI CCNNGG 1 cut(s) 340
Bsc4I CCNNNNNNNGG 1 cut(s) 87
BseDI CCNNGG 1 cut(s) 340
BseGI GGATG 2 cut(s) 33, 232
BseLI CCNNNNNNNGG 1 cut(s) 87
BseMII CTCAG 1 cut(s) 131
BseXI GCAGC 2 cut(s) 64, 257
Bsh1236I CGCG 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 323
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 87
BsmAI GTCTC 2 cut(s) 320, 350
BsmBI CGTCTC 1 cut(s) 320
BsmFI GGGAC 1 cut(s) 290
BsmI GAATGC 1 cut(s) 351
BsoBI CYCGRG 1 cut(s) 323
Bsp143I GATC 4 cut(s) 127, 199, 265, 317
BspACI CCGC 5 cut(s) 11, 88, 176, 335, 362
BspCNI CTCAG 1 cut(s) 132
BspFNI CGCG 1 cut(s) 159
BspHI TCATGA 1 cut(s) 295
BspMAI CTGCAG 2 cut(s) 54, 275
BspMI ACCTGC 1 cut(s) 57
BspOI GCTAGC 1 cut(s) 402
BspPI GGATC 2 cut(s) 135, 207
BssECI CCNNGG 1 cut(s) 340
BssMI GATC 4 cut(s) 127, 199, 265, 317
BssNI GRCGYC 1 cut(s) 329
BssT1I CCWWGG 1 cut(s) 340
Bst4CI ACNGT 2 cut(s) 281, 373
BstACI GRCGYC 1 cut(s) 329
BstC8I GCNNGC 6 cut(s) 157, 161, 206, 310, 400, 404
BstDEI CTNAG 2 cut(s) 140, 209
BstF5I GGATG 2 cut(s) 33, 232
BstFNI CGCG 1 cut(s) 159
BstHHI GCGC 1 cut(s) 165
BstKTI GATC 4 cut(s) 130, 202, 268, 320
BstMAI GTCTC 2 cut(s) 320, 350
BstMBI GATC 4 cut(s) 127, 199, 265, 317
BstMWI GCNNNNNNNGC 1 cut(s) 169
BstNSI RCATGY 1 cut(s) 208
BstSFI CTRYAG 2 cut(s) 50, 271
BstUI CGCG 1 cut(s) 159
BstV1I GCAGC 2 cut(s) 64, 257
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BtsCI GGATG 2 cut(s) 33, 232
BtsI GCAGTG 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 12
BveI ACCTGC 1 cut(s) 57
Cac8I GCNNGC 6 cut(s) 157, 161, 206, 310, 400, 404
CaiI CAGNNNCTG 1 cut(s) 279
CciI TCATGA 1 cut(s) 295
CfoI GCGC 1 cut(s) 165
Cfr13I GGNCC 1 cut(s) 337
Csp6I GTAC 1 cut(s) 244
CviAII CATG 2 cut(s) 205, 296
CviJI RGCY 4 cut(s) 55, 155, 308, 398
CviKI_1 RGCY 4 cut(s) 55, 155, 308, 398
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 2 cut(s) 140, 209
DpnI GATC 4 cut(s) 129, 201, 267, 319
DpnII GATC 4 cut(s) 127, 199, 265, 317
Eco130I CCWWGG 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 337
Eco88I CYCGRG 1 cut(s) 323
EcoT14I CCWWGG 1 cut(s) 340
ErhI CCWWGG 1 cut(s) 340
Esp3I CGTCTC 1 cut(s) 320
FaeI CATG 2 cut(s) 208, 299
FaiI YATR 9 cut(s) 107, 132, 134, 206, 252, 284, 297, 411, 440
FaqI GGGAC 1 cut(s) 290
FatI CATG 2 cut(s) 204, 295
FauNDI CATATG 1 cut(s) 132
Fnu4HI GCNGC 3 cut(s) 11, 53, 271
FokI GGATG 2 cut(s) 40, 239
Fsp4HI GCNGC 3 cut(s) 11, 53, 271
FspAI RTGCGCAY 1 cut(s) 164
FspBI CTAG 4 cut(s) 305, 315, 399, 416
FspI TGCGCA 1 cut(s) 164
GlaI GCGC 1 cut(s) 164
GluI GCNGC 3 cut(s) 11, 53, 271
HhaI GCGC 1 cut(s) 165
Hin1I GRCGYC 1 cut(s) 329
Hin1II CATG 2 cut(s) 208, 299
Hin6I GCGC 1 cut(s) 163
HinP1I GCGC 1 cut(s) 163
HinfI GANTC 2 cut(s) 136, 292
Hpy188I TCNGA 3 cut(s) 141, 223, 355
Hpy188III TCNNGA 4 cut(s) 25, 296, 323, 325
HpyAV CCTTC 1 cut(s) 444
HpyCH4III ACNGT 2 cut(s) 281, 373
HpyCH4IV ACGT 1 cut(s) 329
HpyCH4V TGCA 5 cut(s) 52, 273, 349, 377, 406
HpyF10VI GCNNNNNNNGC 1 cut(s) 169
HpyF3I CTNAG 2 cut(s) 140, 209
HpySE526I ACGT 1 cut(s) 329
Hsp92I GRCGYC 1 cut(s) 329
Hsp92II CATG 2 cut(s) 208, 299
HspAI GCGC 1 cut(s) 163
Kzo9I GATC 4 cut(s) 127, 199, 265, 317
LpnPI CCDG 4 cut(s) 10, 62, 232, 259
Lsp1109I GCAGC 2 cut(s) 64, 257
LweI GCATC 2 cut(s) 75, 174
MaeI CTAG 4 cut(s) 305, 315, 399, 416
MaeII ACGT 1 cut(s) 329
MaeIII GTNAC 2 cut(s) 44, 367
MalI GATC 4 cut(s) 129, 201, 267, 319
MboI GATC 4 cut(s) 127, 199, 265, 317
MboII GAAGA 1 cut(s) 110
MflI RGATCY 1 cut(s) 317
MlyI GAGTC 1 cut(s) 145
MmeI TCCRAC 2 cut(s) 201, 333
MnlI CCTC 3 cut(s) 135, 217, 438
MspA1I CMGCKG 1 cut(s) 335
Mva1269I GAATGC 1 cut(s) 351
MvnI CGCG 1 cut(s) 159
MwoI GCNNNNNNNGC 1 cut(s) 169
NdeI CATATG 1 cut(s) 132
NdeII GATC 4 cut(s) 127, 199, 265, 317
NheI GCTAGC 1 cut(s) 398
NlaIII CATG 2 cut(s) 208, 299
NmuCI GTSAC 1 cut(s) 44
NsbI TGCGCA 1 cut(s) 164
NspI RCATGY 1 cut(s) 208
PaeI GCATGC 1 cut(s) 208
PaeR7I CTCGAG 1 cut(s) 323
PagI TCATGA 1 cut(s) 295
PctI GAATGC 1 cut(s) 351
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 3 cut(s) 12, 54, 272
PleI GAGTC 1 cut(s) 144
PpsI GAGTC 1 cut(s) 144
PspPI GGNCC 1 cut(s) 337
PstI CTGCAG 2 cut(s) 54, 275
PstNI CAGNNNCTG 1 cut(s) 279
PsuI RGATCY 1 cut(s) 317
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
SatI GCNGC 3 cut(s) 11, 53, 271
Sau3AI GATC 4 cut(s) 127, 199, 265, 317
Sau96I GGNCC 1 cut(s) 337
SchI GAGTC 1 cut(s) 145
SetI ASST 6 cut(s) 51, 57, 189, 251, 310, 332
SfaNI GCATC 2 cut(s) 75, 174
SfcI CTRYAG 2 cut(s) 50, 271
Sfr274I CTCGAG 1 cut(s) 323
SinI GGWCC 1 cut(s) 337
SlaI CTCGAG 1 cut(s) 323
SmlI CTYRAG 1 cut(s) 323
SmoI CTYRAG 1 cut(s) 323
SphI GCATGC 1 cut(s) 208
SsiI CCGC 5 cut(s) 11, 88, 176, 335, 362
SspMI CTAG 4 cut(s) 305, 315, 399, 416
StyI CCWWGG 1 cut(s) 340
TaaI ACNGT 2 cut(s) 281, 373
TaiI ACGT 1 cut(s) 332
TaqI TCGA 1 cut(s) 324
TatI WGTACW 1 cut(s) 243
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 1 cut(s) 292
TscAI CASTG 1 cut(s) 12
TseFI GTSAC 1 cut(s) 44
TseI GCWGC 2 cut(s) 52, 270
Tsp45I GTSAC 1 cut(s) 44
TspDTI ATGAA 1 cut(s) 267
TspGWI ACGGA 1 cut(s) 315
TspRI CASTG 1 cut(s) 12
VpaK11BI GGWCC 1 cut(s) 337
XceI RCATGY 1 cut(s) 208
XhoI CTCGAG 1 cut(s) 323
XspI CTAG 4 cut(s) 305, 315, 399, 416
ZraI GACGTC 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.