Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

6494362 .. 6495774

Gene Structure 1413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g10980.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGACATCCCTGCTTTCTTACCCAAGAGACATACACTATGACGATAACTGCATCAACCATCATGTTGTGTTGGCCACTCCTTGGTTTACTGCATTTGCCTCCACTCATACTGCGGCTCCTAACCCTAGGTCTCTCTCCCTTGATAGCGTTAGGGAAGAGCCTGTTGATTTGGGTGACCTTCAGTGCCCGAAGAAAGGTTCTATTGCTCCTCGATACTACTTGGTCGGACGCCTCAACACTGCTAGGGCAGTGGCTTTTGATGCGTTTCGAAGTGTTGTTCGCAATATGTGGCCTCTCCCTTATCCAGTTGAAGTTCAAGCAAGAGGTGATCGCTACATGTTTACATTCGCTAGCGAATGTGATGTCAATCGAGTCAAGAAGGGCGGTTCTTGGGCTTACCAGCACTCAATGATCATCATCAATGACTATGATAGATTCTCTGATATTAGGCAAGTCCCTTTGAATTTCCTTTGGTTATTGGTGGAAATCCTTGTACTTACGGCTGCACTGACAATGGCGGCTACGACAAGGCTGCCATGTCCAAGAGAACAAGAGGATGAAGCTCCGACAGTGATTCTGAGCCCAGTTGCAGTACCTCCCATGGTGTTTAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

205

Amino Acids

23.07

Weight (kDa)

6.19

Isoelectric Point (pI)

48.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	71 - 147	1.3e-06	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	81
AciI	CCGC	3 cut(s)	113, 384, 518
AcoI	YGGCCR	1 cut(s)	72
AcsI	RAATTY	1 cut(s)	463
AcuI	CTGAAG	1 cut(s)	164
AcyI	GRCGYC	1 cut(s)	229
AfaI	GTAC	2 cut(s)	495, 594
AfiI	CCNNNNNNNGG	2 cut(s)	81, 194
AflIII	ACRYGT	1 cut(s)	336
AgsI	TTSAA	3 cut(s)	311, 317, 463
AluBI	AGCT	1 cut(s)	563
AluI	AGCT	1 cut(s)	563
Alw26I	GTCTC	2 cut(s)	21, 135
AoxI	GGCC	2 cut(s)	72, 290
ApeKI	GCWGC	2 cut(s)	503, 532
ApoI	RAATTY	1 cut(s)	463
ArsI	GACNNNNNNTTYG	2 cut(s)	348, 380
AspA2I	CCTAGG	1 cut(s)	125
AsuHPI	GGTGA	2 cut(s)	185, 338
AsuII	TTCGAA	1 cut(s)	268
AsuNHI	GCTAGC	1 cut(s)	350
AvrII	CCTAGG	1 cut(s)	125
BaeGI	GKGCMC	1 cut(s)	188
BalI	TGGCCA	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	584
BbvI	GCAGC	2 cut(s)	490, 519
BccI	CCATC	1 cut(s)	66
BceAI	ACGGC	1 cut(s)	516
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BclI	TGATCA	1 cut(s)	411
BcoDI	GTCTC	2 cut(s)	21, 135
BfaI	CTAG	3 cut(s)	126, 243, 351
BisI	GCNGC	4 cut(s)	114, 504, 519, 533
BlnI	CCTAGG	1 cut(s)	125
BlsI	GCNGC	4 cut(s)	115, 505, 520, 534
BmiI	GGNNCC	1 cut(s)	117
BmrI	ACTGGG	1 cut(s)	578
BmsI	GCATC	2 cut(s)	60, 250
BmtI	GCTAGC	1 cut(s)	354
BmuI	ACTGGG	1 cut(s)	578
Bpu14I	TTCGAA	1 cut(s)	268
BsaBI	GATNNNNATC	2 cut(s)	366, 416
BsaHI	GRCGYC	1 cut(s)	229
BsaI	GGTCTC	1 cut(s)	135
BsaJI	CCNNGG	3 cut(s)	80, 125, 600
BsaXI	ACNNNNNCTCC	2 cut(s)	100, 130
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 194
Bse1I	ACTGG	2 cut(s)	305, 584
Bse8I	GATNNNNATC	2 cut(s)	366, 416
BseDI	CCNNGG	3 cut(s)	80, 125, 600
BseGI	GGATG	2 cut(s)	5, 562
BseJI	GATNNNNATC	2 cut(s)	366, 416
BseLI	CCNNNNNNNGG	2 cut(s)	81, 194
BseMII	CTCAG	1 cut(s)	569
BseNI	ACTGG	2 cut(s)	305, 584
BseRI	GAGGAG	1 cut(s)	198
BseSI	GKGCMC	1 cut(s)	188
BseXI	GCAGC	2 cut(s)	490, 519
BsgI	GTGCAG	1 cut(s)	489
BshFI	GGCC	2 cut(s)	74, 292
BslFI	GGGAC	1 cut(s)	440
BslI	CCNNNNNNNGG	2 cut(s)	81, 194
BsmAI	GTCTC	2 cut(s)	21, 135
BsmFI	GGGAC	1 cut(s)	440
BsnI	GGCC	2 cut(s)	74, 292
Bso31I	GGTCTC	1 cut(s)	135
Bsp119I	TTCGAA	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	188, 584
Bsp143I	GATC	2 cut(s)	328, 411
Bsp19I	CCATGG	1 cut(s)	600
BspACI	CCGC	3 cut(s)	113, 384, 518
BspANI	GGCC	2 cut(s)	74, 292
BspCNI	CTCAG	1 cut(s)	570
BspLI	GGNNCC	1 cut(s)	117
BspOI	GCTAGC	1 cut(s)	354
BspQI	GCTCTTC	1 cut(s)	150
BspT104I	TTCGAA	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	135
BsrI	ACTGG	2 cut(s)	305, 584
BssECI	CCNNGG	3 cut(s)	80, 125, 600
BssMI	GATC	2 cut(s)	328, 411
BssNI	GRCGYC	1 cut(s)	229
BssT1I	CCWWGG	3 cut(s)	80, 125, 600
Bst4CI	ACNGT	1 cut(s)	571
Bst6I	CTCTTC	1 cut(s)	150
BstACI	GRCGYC	1 cut(s)	229
BstBI	TTCGAA	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	352
BstDEI	CTNAG	1 cut(s)	578
BstDSI	CCRYGG	1 cut(s)	600
BstEII	GGTNACC	1 cut(s)	173
BstF5I	GGATG	2 cut(s)	5, 562
BstKTI	GATC	2 cut(s)	331, 414
BstMAI	GTCTC	2 cut(s)	21, 135
BstMBI	GATC	2 cut(s)	328, 411
BstMWI	GCNNNNNNNGC	1 cut(s)	260
BstNSI	RCATGY	1 cut(s)	340
BstPI	GGTNACC	1 cut(s)	173
BstSLI	GKGCMC	1 cut(s)	188
BstV1I	GCAGC	2 cut(s)	490, 519
BsuRI	GGCC	2 cut(s)	74, 292
BtgI	CCRYGG	1 cut(s)	600
BtsCI	GGATG	2 cut(s)	5, 562
BtsI	GCAGTG	2 cut(s)	237, 255
BtsIMutI	CAGTG	5 cut(s)	188, 237, 255, 506, 576
Cac8I	GCNNGC	1 cut(s)	352
CseI	GACGC	1 cut(s)	237
Csp6I	GTAC	2 cut(s)	494, 593
CviAII	CATG	4 cut(s)	62, 337, 537, 601
CviQI	GTAC	2 cut(s)	494, 593
DdeI	CTNAG	1 cut(s)	578
DpnI	GATC	2 cut(s)	330, 413
DpnII	GATC	2 cut(s)	328, 411
EaeI	YGGCCR	1 cut(s)	72
Eam1104I	CTCTTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	150
Eco130I	CCWWGG	3 cut(s)	80, 125, 600
Eco24I	GRGCYC	1 cut(s)	584
Eco31I	GGTCTC	1 cut(s)	135
Eco57I	CTGAAG	1 cut(s)	164
Eco91I	GGTNACC	1 cut(s)	173
EcoO65I	GGTNACC	1 cut(s)	173
EcoT14I	CCWWGG	3 cut(s)	80, 125, 600
EcoT38I	GRGCYC	1 cut(s)	584
ErhI	CCWWGG	3 cut(s)	80, 125, 600
FaeI	CATG	4 cut(s)	65, 340, 540, 604
FaiI	YATR	9 cut(s)	32, 39, 63, 108, 287, 338, 429, 538, 602
FaqI	GGGAC	1 cut(s)	440
FatI	CATG	4 cut(s)	61, 336, 536, 600
FbaI	TGATCA	1 cut(s)	411
Fnu4HI	GCNGC	4 cut(s)	114, 504, 519, 533
FokI	GGATG	1 cut(s)	569
FriOI	GRGCYC	1 cut(s)	584
Fsp4HI	GCNGC	4 cut(s)	114, 504, 519, 533
FspBI	CTAG	3 cut(s)	126, 243, 351
GluI	GCNGC	4 cut(s)	114, 504, 519, 533
HaeIII	GGCC	2 cut(s)	74, 292
HgaI	GACGC	1 cut(s)	237
Hin1I	GRCGYC	1 cut(s)	229
Hin1II	CATG	4 cut(s)	65, 340, 540, 604
HinfI	GANTC	3 cut(s)	372, 435, 574
HphI	GGTGA	2 cut(s)	185, 338
Hpy166II	GTNNAC	2 cut(s)	87, 342
Hpy188I	TCNGA	4 cut(s)	227, 442, 567, 579
Hpy188III	TCNNGA	1 cut(s)	376
Hpy8I	GTNNAC	2 cut(s)	87, 342
HpyAV	CCTTC	2 cut(s)	188, 373
HpyCH4III	ACNGT	1 cut(s)	571
HpyCH4V	TGCA	4 cut(s)	51, 92, 506, 590
HpyF10VI	GCNNNNNNNGC	1 cut(s)	260
HpyF3I	CTNAG	1 cut(s)	578
Hsp92I	GRCGYC	1 cut(s)	229
Hsp92II	CATG	4 cut(s)	65, 340, 540, 604
Ksp22I	TGATCA	1 cut(s)	411
Kzo9I	GATC	2 cut(s)	328, 411
LguI	GCTCTTC	1 cut(s)	150
LmnI	GCTCC	3 cut(s)	121, 211, 568
LpnPI	CCDG	5 cut(s)	23, 174, 318, 413, 597
Lsp1109I	GCAGC	2 cut(s)	490, 519
LweI	GCATC	2 cut(s)	60, 250
MaeI	CTAG	3 cut(s)	126, 243, 351
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	2 cut(s)	330, 413
MboI	GATC	2 cut(s)	328, 411
MboII	GAAGA	2 cut(s)	167, 202
MhlI	GDGCHC	2 cut(s)	188, 584
MlsI	TGGCCA	1 cut(s)	74
MluCI	AATT	2 cut(s)	463, 610
MluNI	TGGCCA	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	381
MmeI	TCCRAC	2 cut(s)	205, 590
MnlI	CCTC	7 cut(s)	109, 219, 242, 303, 317, 547, 606
Mox20I	TGGCCA	1 cut(s)	74
MscI	TGGCCA	1 cut(s)	74
MseI	TTAA	1 cut(s)	609
Msp20I	TGGCCA	1 cut(s)	74
MwoI	GCNNNNNNNGC	1 cut(s)	260
NcoI	CCATGG	1 cut(s)	600
NdeII	GATC	2 cut(s)	328, 411
NheI	GCTAGC	1 cut(s)	350
NlaIII	CATG	4 cut(s)	65, 340, 540, 604
NlaIV	GGNNCC	1 cut(s)	117
NmuCI	GTSAC	1 cut(s)	173
NspI	RCATGY	1 cut(s)	340
NspV	TTCGAA	1 cut(s)	268
PciI	ACATGT	1 cut(s)	336
PciSI	GCTCTTC	1 cut(s)	150
PfeI	GAWTC	2 cut(s)	435, 574
PflMI	CCANNNNNTGG	1 cut(s)	81
PkrI	GCNGC	4 cut(s)	115, 505, 520, 534
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PscI	ACATGT	1 cut(s)	336
PspEI	GGTNACC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	117
RsaI	GTAC	2 cut(s)	495, 594
RsaNI	GTAC	2 cut(s)	494, 593
SapI	GCTCTTC	1 cut(s)	150
SaqAI	TTAA	1 cut(s)	609
SatI	GCNGC	4 cut(s)	114, 504, 519, 533
Sau3AI	GATC	2 cut(s)	328, 411
SchI	GAGTC	1 cut(s)	381
SduI	GDGCHC	2 cut(s)	188, 584
SetI	ASST	6 cut(s)	131, 180, 199, 328, 565, 598
SfaNI	GCATC	2 cut(s)	60, 250
SfuI	TTCGAA	1 cut(s)	268
Sse9I	AATT	2 cut(s)	463, 610
SsiI	CCGC	3 cut(s)	113, 384, 518
SspMI	CTAG	3 cut(s)	126, 243, 351
StyI	CCWWGG	3 cut(s)	80, 125, 600
TaaI	ACNGT	1 cut(s)	571
TaqI	TCGA	3 cut(s)	211, 268, 370
TasI	AATT	2 cut(s)	463, 610
TatI	WGTACW	1 cut(s)	493
TauI	GCSGC	2 cut(s)	116, 521
TfiI	GAWTC	2 cut(s)	435, 574
Tru1I	TTAA	1 cut(s)	609
Tru9I	TTAA	1 cut(s)	609
TscAI	CASTG	5 cut(s)	188, 244, 255, 513, 576
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	2 cut(s)	503, 532
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	1 cut(s)	573
TspRI	CASTG	5 cut(s)	188, 244, 255, 513, 576
Van91I	CCANNNNNTGG	1 cut(s)	81
XapI	RAATTY	1 cut(s)	463
XceI	RCATGY	1 cut(s)	340
XmaJI	CCTAGG	1 cut(s)	125
XspI	CTAG	3 cut(s)	126, 243, 351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.