RLG00000005720

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Forward (+)
1168487 .. 1169177
691 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005720

Sequence Viewer

Length: 372 bp
ATGGAACAAAAGCGAGAAAATCGACAATCATACAATAAGGAGAAAGAAACTCACAGATCGGGATTTCGAGCCTCTCCGCGTCCTCTCAGCCTCCCCGCATCTCCACGTCTCCAATGTGTGAAGATATGGTTCAGAGTGTGTAGGAGTCTCAACATCACAGCTATAGCGGAGGAGAGGGAGAAAGAAGGAGGCCGATATGGTTCAGATCGGGATTTCGAGCGTCTCCGCGTCTCCACGTCATGGCATCTCCTCGTCACGGCGTCTTCGAGTCACGACGTTGGCAGAGGAGAAGAGATGGAGGCGGCTGATCGATATGAAAGGCTAAAAGCAGCAGATCGGGCTGAAGAGTTGAAGATTAGGTTTAGACTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

14.42

Weight (kDa)

9.68

Isoelectric Point (pI)

47.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 240
AccII CGCG 2 cut(s) 79, 228
AciI CCGC 5 cut(s) 77, 96, 167, 226, 302
AcuI CTGAAG 1 cut(s) 363
AcyI GRCGYC 1 cut(s) 260
AfiI CCNNNNNNNGG 2 cut(s) 240, 256
AgsI TTSAA 1 cut(s) 352
AjiI CACGTC 2 cut(s) 107, 237
AluBI AGCT 1 cut(s) 161
AluI AGCT 1 cut(s) 161
Alw26I GTCTC 4 cut(s) 113, 152, 227, 235
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 255
BbvI GCAGC 1 cut(s) 341
BccI CCATC 1 cut(s) 289
BceAI ACGGC 1 cut(s) 273
BcoDI GTCTC 4 cut(s) 113, 152, 227, 235
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 2 cut(s) 303, 330
BlsI GCNGC 2 cut(s) 304, 331
BmgBI CACGTC 2 cut(s) 107, 237
BmsI GCATC 2 cut(s) 107, 253
BpiI GAAGAC 1 cut(s) 255
Bsa29I ATCGAT 1 cut(s) 310
BsaHI GRCGYC 1 cut(s) 260
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 256
BseCI ATCGAT 1 cut(s) 310
BseLI CCNNNNNNNGG 2 cut(s) 240, 256
BseMII CTCAG 1 cut(s) 100
BseRI GAGGAG 3 cut(s) 185, 239, 300
BseXI GCAGC 1 cut(s) 341
Bsh1236I CGCG 2 cut(s) 79, 228
BshFI GGCC 1 cut(s) 192
BshVI ATCGAT 1 cut(s) 310
BslI CCNNNNNNNGG 2 cut(s) 240, 256
BsmAI GTCTC 4 cut(s) 113, 152, 227, 235
BsmBI CGTCTC 3 cut(s) 113, 227, 235
BsnI GGCC 1 cut(s) 192
Bsp143I GATC 4 cut(s) 56, 205, 307, 334
BspACI CCGC 5 cut(s) 77, 96, 167, 226, 302
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 99
BspDI ATCGAT 1 cut(s) 310
BspFNI CGCG 2 cut(s) 79, 228
BssMI GATC 4 cut(s) 56, 205, 307, 334
BssNI GRCGYC 1 cut(s) 260
Bst6I CTCTTC 2 cut(s) 285, 339
BstACI GRCGYC 1 cut(s) 260
BstDEI CTNAG 1 cut(s) 86
BstFNI CGCG 2 cut(s) 79, 228
BstKTI GATC 4 cut(s) 59, 208, 310, 337
BstMAI GTCTC 4 cut(s) 113, 152, 227, 235
BstMBI GATC 4 cut(s) 56, 205, 307, 334
BstMWI GCNNNNNNNGC 1 cut(s) 338
BstSFI CTRYAG 1 cut(s) 162
BstUI CGCG 2 cut(s) 79, 228
BstV1I GCAGC 1 cut(s) 341
BstV2I GAAGAC 1 cut(s) 255
Bsu15I ATCGAT 1 cut(s) 310
BsuRI GGCC 1 cut(s) 192
BsuTUI ATCGAT 1 cut(s) 310
BtrI CACGTC 2 cut(s) 107, 237
ClaI ATCGAT 1 cut(s) 310
CseI GACGC 4 cut(s) 68, 209, 217, 249
CviAII CATG 1 cut(s) 240
CviJI RGCY 7 cut(s) 71, 90, 161, 192, 305, 322, 341
CviKI_1 RGCY 7 cut(s) 71, 90, 161, 192, 305, 322, 341
DdeI CTNAG 1 cut(s) 86
DpnI GATC 4 cut(s) 58, 207, 309, 336
DpnII GATC 4 cut(s) 56, 205, 307, 334
Eam1104I CTCTTC 2 cut(s) 285, 339
EarI CTCTTC 2 cut(s) 285, 339
Eco57I CTGAAG 1 cut(s) 363
Esp3I CGTCTC 3 cut(s) 113, 227, 235
FaeI CATG 1 cut(s) 243
FaiI YATR 6 cut(s) 31, 127, 164, 198, 241, 315
FatI CATG 1 cut(s) 239
FauI CCCGC 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 303, 330
Fsp4HI GCNGC 2 cut(s) 303, 330
GluI GCNGC 2 cut(s) 303, 330
HaeIII GGCC 1 cut(s) 192
HgaI GACGC 4 cut(s) 68, 209, 217, 249
Hin1I GRCGYC 1 cut(s) 260
Hin1II CATG 1 cut(s) 243
HinfI GANTC 2 cut(s) 145, 268
Hpy188I TCNGA 2 cut(s) 134, 205
Hpy188III TCNNGA 3 cut(s) 60, 209, 272
Hpy99I CGWCG 1 cut(s) 278
HpyAV CCTTC 1 cut(s) 179
HpyCH4IV ACGT 3 cut(s) 106, 236, 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 338
HpyF3I CTNAG 1 cut(s) 86
HpySE526I ACGT 3 cut(s) 106, 236, 276
Hsp92I GRCGYC 1 cut(s) 260
Hsp92II CATG 1 cut(s) 243
Kzo9I GATC 4 cut(s) 56, 205, 307, 334
Lsp1109I GCAGC 1 cut(s) 341
LweI GCATC 2 cut(s) 107, 253
MaeII ACGT 3 cut(s) 106, 236, 276
MaeIII GTNAC 2 cut(s) 253, 269
MalI GATC 4 cut(s) 58, 207, 309, 336
MboI GATC 4 cut(s) 56, 205, 307, 334
MboII GAAGA 5 cut(s) 133, 255, 302, 356, 364
MlyI GAGTC 2 cut(s) 154, 277
MnlI CCTC 9 cut(s) 82, 93, 101, 163, 168, 182, 260, 278, 292
MseI TTAA 1 cut(s) 370
MvnI CGCG 2 cut(s) 79, 228
MwoI GCNNNNNNNGC 1 cut(s) 338
NdeII GATC 4 cut(s) 56, 205, 307, 334
NlaIII CATG 1 cut(s) 243
NmuCI GTSAC 2 cut(s) 253, 269
PcsI WCGNNNNNNNCGW 1 cut(s) 263
PflMI CCANNNNNTGG 1 cut(s) 240
PkrI GCNGC 2 cut(s) 304, 331
PleI GAGTC 2 cut(s) 153, 276
PpsI GAGTC 2 cut(s) 153, 276
SaqAI TTAA 1 cut(s) 370
SatI GCNGC 2 cut(s) 303, 330
Sau3AI GATC 4 cut(s) 56, 205, 307, 334
SchI GAGTC 2 cut(s) 154, 277
SetI ASST 5 cut(s) 109, 163, 239, 279, 362
SfaNI GCATC 2 cut(s) 107, 253
SfcI CTRYAG 1 cut(s) 162
SsiI CCGC 5 cut(s) 77, 96, 167, 226, 302
TaiI ACGT 3 cut(s) 109, 239, 279
TaqI TCGA 5 cut(s) 22, 67, 216, 266, 310
TauI GCSGC 1 cut(s) 305
Tru1I TTAA 1 cut(s) 370
Tru9I TTAA 1 cut(s) 370
TseFI GTSAC 2 cut(s) 253, 269
TseI GCWGC 1 cut(s) 329
Tsp45I GTSAC 2 cut(s) 253, 269
TspDTI ATGAA 1 cut(s) 330
Van91I CCANNNNNTGG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.