Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Reverse (-)

63751269 .. 63751955

Gene Structure 687 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG374900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGTTTATGTTTTCGAATGCAAATGATGTCAATTGGATCAGGAGAGGTGGGTCGTGGAGTGTTAACAAGGAGCTGGTGGTTCTAAATGATTATGACGGATTCTCGCTCATTTTTGAGGTGGCACTGATGCATCACAATGATGCAACTGCTATTAGATTGGTTACTGGTGGTGCGGCGGTGAGTGCATCTCTTCCTTCTATGGTGTTTCGAGCTAATGATGCTCCATCGTTGTCACTAACTTTCAAGGTTCCCTCAAAGTTCATGAAAGCGATGGTGTCTAAGCGCTCAATGGTGATCAAAGCAATAAAGAAAAGTTTGATAAGGAGAGAGGAGTTACCACGGCTTACTGGGATGTGTAGAGACAGAGAGGATAATGATGAGGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

128

Amino Acids

14.37

Weight (kDa)

9.51

Isoelectric Point (pI)

43.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	173, 176
AclWI	GGATC	1 cut(s)	44
AfeI	AGCGCT	1 cut(s)	284
AgsI	TTSAA	1 cut(s)	244
AluBI	AGCT	2 cut(s)	73, 212
AluI	AGCT	2 cut(s)	73, 212
Alw26I	GTCTC	1 cut(s)	354
AlwI	GGATC	1 cut(s)	44
Aor51HI	AGCGCT	1 cut(s)	284
AspLEI	GCGC	1 cut(s)	285
AsuHPI	GGTGA	2 cut(s)	190, 304
AsuII	TTCGAA	1 cut(s)	14
BccI	CCATC	2 cut(s)	232, 265
BceAI	ACGGC	1 cut(s)	356
BclI	TGATCA	1 cut(s)	294
BcoDI	GTCTC	1 cut(s)	354
BfoI	RGCGCY	1 cut(s)	286
BisI	GCNGC	1 cut(s)	174
BlsI	GCNGC	1 cut(s)	175
BmiI	GGNNCC	1 cut(s)	249
BmrI	ACTGGG	1 cut(s)	357
BmsI	GCATC	5 cut(s)	117, 130, 139, 194, 208
BmuI	ACTGGG	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	172, 204
Bpu14I	TTCGAA	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	338
Bse1I	ACTGG	2 cut(s)	169, 352
BseDI	CCNNGG	1 cut(s)	338
BseGI	GGATG	1 cut(s)	357
BseNI	ACTGG	2 cut(s)	169, 352
BseRI	GAGGAG	1 cut(s)	344
BsmAI	GTCTC	1 cut(s)	354
BsmI	GAATGC	1 cut(s)	22
Bsp119I	TTCGAA	1 cut(s)	14
Bsp143I	GATC	2 cut(s)	36, 294
BspACI	CCGC	2 cut(s)	173, 176
BspHI	TCATGA	1 cut(s)	261
BspLI	GGNNCC	1 cut(s)	249
BspPI	GGATC	1 cut(s)	44
BspT104I	TTCGAA	1 cut(s)	14
BsrI	ACTGG	2 cut(s)	169, 352
BssECI	CCNNGG	1 cut(s)	338
BssMI	GATC	2 cut(s)	36, 294
Bst6I	CTCTTC	1 cut(s)	195
BstBI	TTCGAA	1 cut(s)	14
BstDEI	CTNAG	1 cut(s)	279
BstDSI	CCRYGG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	357
BstH2I	RGCGCY	1 cut(s)	286
BstHHI	GCGC	1 cut(s)	285
BstKTI	GATC	2 cut(s)	39, 297
BstMAI	GTCTC	1 cut(s)	354
BstMBI	GATC	2 cut(s)	36, 294
BstMWI	GCNNNNNNNGC	2 cut(s)	182, 218
BtgI	CCRYGG	1 cut(s)	338
BtgZI	GCGATG	1 cut(s)	284
BtsCI	GGATG	1 cut(s)	357
BtsIMutI	CAGTG	1 cut(s)	122
CciI	TCATGA	1 cut(s)	261
CfoI	GCGC	1 cut(s)	285
CviAII	CATG	1 cut(s)	262
CviJI	RGCY	3 cut(s)	73, 212, 343
CviKI_1	RGCY	3 cut(s)	73, 212, 343
DdeI	CTNAG	1 cut(s)	279
DpnI	GATC	2 cut(s)	38, 296
DpnII	GATC	2 cut(s)	36, 294
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco47III	AGCGCT	1 cut(s)	284
EcoT22I	ATGCAT	1 cut(s)	132
FaeI	CATG	1 cut(s)	265
FaiI	YATR	4 cut(s)	8, 93, 200, 263
FatI	CATG	1 cut(s)	261
FbaI	TGATCA	1 cut(s)	294
Fnu4HI	GCNGC	1 cut(s)	174
FokI	GGATG	1 cut(s)	364
Fsp4HI	GCNGC	1 cut(s)	174
GlaI	GCGC	1 cut(s)	284
GluI	GCNGC	1 cut(s)	174
HaeII	RGCGCY	1 cut(s)	286
HhaI	GCGC	1 cut(s)	285
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	283
HinP1I	GCGC	1 cut(s)	283
HincII	GTYRAC	1 cut(s)	64
HindII	GTYRAC	1 cut(s)	64
HinfI	GANTC	1 cut(s)	99
HpaI	GTTAAC	1 cut(s)	64
HphI	GGTGA	2 cut(s)	190, 304
Hpy166II	GTNNAC	1 cut(s)	64
Hpy188III	TCNNGA	2 cut(s)	40, 262
Hpy8I	GTNNAC	1 cut(s)	64
HpyAV	CCTTC	1 cut(s)	204
HpyCH4V	TGCA	4 cut(s)	20, 130, 143, 185
HpyF10VI	GCNNNNNNNGC	2 cut(s)	182, 218
HpyF3I	CTNAG	1 cut(s)	279
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	1 cut(s)	283
Ksp22I	TGATCA	1 cut(s)	294
KspAI	GTTAAC	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	36, 294
LmnI	GCTCC	2 cut(s)	70, 226
LpnPI	CCDG	4 cut(s)	25, 59, 150, 333
LweI	GCATC	5 cut(s)	117, 130, 139, 194, 208
MaeIII	GTNAC	3 cut(s)	160, 231, 333
MalI	GATC	2 cut(s)	38, 296
MboI	GATC	2 cut(s)	36, 294
MboII	GAAGA	1 cut(s)	182
MfeI	CAATTG	1 cut(s)	31
MluCI	AATT	1 cut(s)	31
MnlI	CCTC	6 cut(s)	38, 109, 262, 322, 361, 373
Mph1103I	ATGCAT	1 cut(s)	132
MseI	TTAA	1 cut(s)	63
MslI	CAYNNNNRTG	2 cut(s)	135, 138
MunI	CAATTG	1 cut(s)	31
Mva1269I	GAATGC	1 cut(s)	22
MwoI	GCNNNNNNNGC	2 cut(s)	182, 218
NdeII	GATC	2 cut(s)	36, 294
NlaIII	CATG	1 cut(s)	265
NlaIV	GGNNCC	1 cut(s)	249
NmuCI	GTSAC	1 cut(s)	231
NsiI	ATGCAT	1 cut(s)	132
NspV	TTCGAA	1 cut(s)	14
PagI	TCATGA	1 cut(s)	261
PctI	GAATGC	1 cut(s)	22
PfeI	GAWTC	1 cut(s)	99
PkrI	GCNGC	1 cut(s)	175
PspN4I	GGNNCC	1 cut(s)	249
RseI	CAYNNNNRTG	2 cut(s)	135, 138
SaqAI	TTAA	1 cut(s)	63
SatI	GCNGC	1 cut(s)	174
Sau3AI	GATC	2 cut(s)	36, 294
SetI	ASST	6 cut(s)	49, 75, 120, 214, 249, 384
SfaNI	GCATC	5 cut(s)	117, 130, 139, 194, 208
SfuI	TTCGAA	1 cut(s)	14
SmiMI	CAYNNNNRTG	2 cut(s)	135, 138
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	2 cut(s)	173, 176
TaqI	TCGA	2 cut(s)	14, 208
TasI	AATT	1 cut(s)	31
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	1 cut(s)	99
Tru1I	TTAA	1 cut(s)	63
Tru9I	TTAA	1 cut(s)	63
TscAI	CASTG	1 cut(s)	129
TseFI	GTSAC	1 cut(s)	231
Tsp45I	GTSAC	1 cut(s)	231
TspDTI	ATGAA	2 cut(s)	250, 278
TspGWI	ACGGA	1 cut(s)	111
TspRI	CASTG	1 cut(s)	129
Zsp2I	ATGCAT	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.