Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00055

Orthogroup ID

OG0000172

Physical Location & Seq

Genomic Coordinates Forward (+)

13591 .. 14106

Gene Structure 516 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G001820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGCTGCTGCTATTGCCTCCATGACTGCCAGGCTAGCGACCAAGTTGTCGCTTAGAGAGGGTGAAGAACCGGTGGACTTAGGGAACCTTAGGGTTCTGGGGAAGGAATTTCTTGCTCGCCATGTTTACTTGGTGGGGAAACTCAACACTTGTAGGGCGGTAGTCTTGGATTTGTTCCGGAGTGTGGTTAGATCCATGTGGAGACTAACGGGGACGGTGGAGGTCCAACCCCTGGGTGATAGATTTTTGTTTACATTCACCCATGAACGTGATGTTGCGCGGGTGAAGAAGGGAGGCCTATGGGGCTTTCAACGGGCTATGATTCTGTTGAATGACTATGATGGCTTCTCGGAGATTGCTGAGGTGAAGCTTGATTTTATTTGGATCTGGGTTGTGCTTCAAGGCATCCCACCAGGTATCTTGACTGAACCTATGGTCAGGTTGGTGGGAGGGACGATTAGCGAGGTTCTGGAGGTGGATCGCTTGGCTCTTCGTCATGGGGAACCTCGGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005829 GO:0005886 GO:0005911 GO:0006950 GO:0006952 GO:0006979 GO:0008150 GO:0008152 GO:0009505 GO:0009506 GO:0009605 GO:0009607 GO:0009620 GO:0016020 GO:0016491 GO:0016614 GO:0016899 GO:0030054 GO:0030312 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048046 GO:0050832 GO:0050896 GO:0051704 GO:0051707 GO:0055044 GO:0055114 GO:0071944 GO:0098542

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BBE FAD_binding_4

Protein Analysis

171

Amino Acids

19.23

Weight (kDa)

8.89

Isoelectric Point (pI)

28.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	43 - 114	1.8e-07	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000172)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G59650 AT3G59650
fragaria_vesca	FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica	MD08G1230600.v1.1
prunus_persica	Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis	pycom08g20050 pycom15g37590
rosa_chinensis	RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata	RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora	Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii	Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa	Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha	Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana	Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	46
AccB7I	CCANNNNNTGG	1 cut(s)	232
AccII	CGCG	1 cut(s)	280
AccIII	TCCGGA	1 cut(s)	177
AciI	CCGC	2 cut(s)	158, 280
AclWI	GGATC	3 cut(s)	186, 392, 486
AcsI	RAATTY	1 cut(s)	107
AfiI	CCNNNNNNNGG	2 cut(s)	184, 232
AgeI	ACCGGT	1 cut(s)	70
AgsI	TTSAA	3 cut(s)	311, 331, 401
AjnI	CCWGG	3 cut(s)	29, 231, 412
AluBI	AGCT	1 cut(s)	370
AluI	AGCT	1 cut(s)	370
Alw26I	GTCTC	1 cut(s)	196
AlwI	GGATC	3 cut(s)	186, 392, 486
Ama87I	CYCGRG	1 cut(s)	507
Aor13HI	TCCGGA	1 cut(s)	177
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	2 cut(s)	5, 8
ApoI	RAATTY	1 cut(s)	107
AsiGI	ACCGGT	1 cut(s)	70
AspLEI	GCGC	1 cut(s)	280
AspS9I	GGNCC	1 cut(s)	223
AsuHPI	GGTGA	5 cut(s)	74, 248, 250, 295, 376
AsuNHI	GCTAGC	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	507
AvaII	GGWCC	1 cut(s)	223
AxyI	CCTNAGG	1 cut(s)	89
BbvCI	CCTCAGC	1 cut(s)	360
BccI	CCATC	1 cut(s)	335
BciT130I	CCWGG	3 cut(s)	31, 233, 414
BcoDI	GTCTC	1 cut(s)	196
BfaI	CTAG	1 cut(s)	35
BglI	GCCNNNNNGGC	1 cut(s)	303
BisI	GCNGC	2 cut(s)	6, 9
BlsI	GCNGC	2 cut(s)	7, 10
Bme1390I	CCNGG	3 cut(s)	31, 233, 414
Bme18I	GGWCC	1 cut(s)	223
BmeT110I	CYCGRG	1 cut(s)	507
BmgT120I	GGNCC	1 cut(s)	223
BmiI	GGNNCC	2 cut(s)	86, 504
BmrFI	CCNGG	3 cut(s)	31, 233, 414
BmsI	GCATC	1 cut(s)	414
BmtI	GCTAGC	1 cut(s)	38
BpmI	CTGGAG	1 cut(s)	491
Bpu10I	CCTNAGC	1 cut(s)	360
BsaJI	CCNNGG	3 cut(s)	231, 232, 506
BsaWI	WCCGGW	2 cut(s)	70, 177
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 232
Bse118I	RCCGGY	1 cut(s)	70
Bse21I	CCTNAGG	1 cut(s)	89
BseAI	TCCGGA	1 cut(s)	177
BseBI	CCWGG	3 cut(s)	31, 233, 414
BseDI	CCNNGG	3 cut(s)	231, 232, 506
BseGI	GGATG	1 cut(s)	405
BseLI	CCNNNNNNNGG	2 cut(s)	184, 232
BseMII	CTCAG	1 cut(s)	351
Bsh1236I	CGCG	1 cut(s)	280
BshFI	GGCC	1 cut(s)	297
BshTI	ACCGGT	1 cut(s)	70
BsiHKCI	CYCGRG	1 cut(s)	507
BsiSI	CCGG	2 cut(s)	71, 178
BslFI	GGGAC	2 cut(s)	226, 466
BslI	CCNNNNNNNGG	2 cut(s)	184, 232
BsmAI	GTCTC	1 cut(s)	196
BsmFI	GGGAC	2 cut(s)	226, 466
BsnI	GGCC	1 cut(s)	297
BsoBI	CYCGRG	1 cut(s)	507
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	191, 384, 478
BspACI	CCGC	2 cut(s)	158, 280
BspANI	GGCC	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	352
BspEI	TCCGGA	1 cut(s)	177
BspFNI	CGCG	1 cut(s)	280
BspLI	GGNNCC	2 cut(s)	86, 504
BspOI	GCTAGC	1 cut(s)	38
BspPI	GGATC	3 cut(s)	186, 392, 486
BspQI	GCTCTTC	1 cut(s)	495
BsrFI	RCCGGY	1 cut(s)	70
BssAI	RCCGGY	1 cut(s)	70
BssECI	CCNNGG	3 cut(s)	231, 232, 506
BssMI	GATC	3 cut(s)	191, 384, 478
Bst2UI	CCWGG	3 cut(s)	31, 233, 414
Bst4CI	ACNGT	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	495
BstC8I	GCNNGC	2 cut(s)	36, 118
BstDEI	CTNAG	4 cut(s)	53, 79, 89, 360
BstF5I	GGATG	1 cut(s)	405
BstFNI	CGCG	1 cut(s)	280
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	3 cut(s)	194, 387, 481
BstMAI	GTCTC	1 cut(s)	196
BstMBI	GATC	3 cut(s)	191, 384, 478
BstMWI	GCNNNNNNNGC	3 cut(s)	14, 35, 303
BstNI	CCWGG	3 cut(s)	31, 233, 414
BstSCI	CCNGG	3 cut(s)	29, 231, 412
BstUI	CGCG	1 cut(s)	280
BstX2I	RGATCY	2 cut(s)	191, 384
BstYI	RGATCY	2 cut(s)	191, 384
Bsu36I	CCTNAGG	1 cut(s)	89
BsuRI	GGCC	1 cut(s)	297
BtsCI	GGATG	1 cut(s)	405
Cac8I	GCNNGC	2 cut(s)	36, 118
CfoI	GCGC	1 cut(s)	280
Cfr10I	RCCGGY	1 cut(s)	70
Cfr13I	GGNCC	1 cut(s)	223
CsiI	ACCWGGT	1 cut(s)	412
CspAI	ACCGGT	1 cut(s)	70
CviAII	CATG	5 cut(s)	22, 122, 196, 263, 497
CviJI	RGCY	8 cut(s)	5, 34, 297, 306, 317, 345, 370, 488
CviKI_1	RGCY	8 cut(s)	5, 34, 297, 306, 317, 345, 370, 488
DdeI	CTNAG	4 cut(s)	53, 79, 89, 360
DpnI	GATC	3 cut(s)	193, 386, 480
DpnII	GATC	3 cut(s)	191, 384, 478
DrdI	GACNNNNNNGTC	1 cut(s)	46
DseDI	GACNNNNNNGTC	1 cut(s)	46
Eam1104I	CTCTTC	1 cut(s)	495
EarI	CTCTTC	1 cut(s)	495
Eco147I	AGGCCT	1 cut(s)	297
Eco47I	GGWCC	1 cut(s)	223
Eco81I	CCTNAGG	1 cut(s)	89
Eco88I	CYCGRG	1 cut(s)	507
EcoRII	CCWGG	3 cut(s)	29, 231, 412
FaeI	CATG	5 cut(s)	25, 125, 199, 266, 500
FaiI	YATR	9 cut(s)	23, 123, 197, 264, 301, 320, 339, 434, 498
FaqI	GGGAC	2 cut(s)	226, 466
FatI	CATG	5 cut(s)	21, 121, 195, 262, 496
FauI	CCCGC	1 cut(s)	273
Fnu4HI	GCNGC	2 cut(s)	6, 9
FokI	GGATG	1 cut(s)	392
Fsp4HI	GCNGC	2 cut(s)	6, 9
FspBI	CTAG	1 cut(s)	35
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	2 cut(s)	6, 9
GsuI	CTGGAG	1 cut(s)	491
HaeIII	GGCC	1 cut(s)	297
HapII	CCGG	2 cut(s)	71, 178
HhaI	GCGC	1 cut(s)	280
Hin1II	CATG	5 cut(s)	25, 125, 199, 266, 500
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	1 cut(s)	322
HpaII	CCGG	2 cut(s)	71, 178
HphI	GGTGA	5 cut(s)	74, 248, 250, 295, 376
Hpy166II	GTNNAC	3 cut(s)	76, 127, 252
Hpy188I	TCNGA	1 cut(s)	352
Hpy188III	TCNNGA	3 cut(s)	178, 421, 470
Hpy8I	GTNNAC	3 cut(s)	76, 127, 252
HpyAV	CCTTC	2 cut(s)	97, 283
HpyCH4III	ACNGT	1 cut(s)	217
HpyCH4IV	ACGT	1 cut(s)	268
HpyF10VI	GCNNNNNNNGC	3 cut(s)	14, 35, 303
HpyF3I	CTNAG	4 cut(s)	53, 79, 89, 360
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	5 cut(s)	25, 125, 199, 266, 500
HspAI	GCGC	1 cut(s)	278
Kpn2I	TCCGGA	1 cut(s)	177
Kzo9I	GATC	3 cut(s)	191, 384, 478
LguI	GCTCTTC	1 cut(s)	495
LweI	GCATC	1 cut(s)	414
MabI	ACCWGGT	1 cut(s)	412
MaeI	CTAG	1 cut(s)	35
MaeII	ACGT	1 cut(s)	268
MalI	GATC	3 cut(s)	193, 386, 480
MboI	GATC	3 cut(s)	191, 384, 478
MboII	GAAGA	3 cut(s)	77, 298, 482
MflI	RGATCY	2 cut(s)	191, 384
MluCI	AATT	1 cut(s)	107
MmeI	TCCRAC	1 cut(s)	250
MnlI	CCTC	9 cut(s)	28, 52, 214, 287, 355, 443, 457, 466, 516
MroI	TCCGGA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	267
MspI	CCGG	2 cut(s)	71, 178
MspR9I	CCNGG	3 cut(s)	31, 233, 414
MvaI	CCWGG	3 cut(s)	31, 233, 414
MvnI	CGCG	1 cut(s)	280
MwoI	GCNNNNNNNGC	3 cut(s)	14, 35, 303
NdeII	GATC	3 cut(s)	191, 384, 478
NheI	GCTAGC	1 cut(s)	34
NlaIII	CATG	5 cut(s)	25, 125, 199, 266, 500
NlaIV	GGNNCC	2 cut(s)	86, 504
PasI	CCCWGGG	1 cut(s)	232
PceI	AGGCCT	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	495
PfeI	GAWTC	1 cut(s)	322
PflMI	CCANNNNNTGG	1 cut(s)	232
PinAI	ACCGGT	1 cut(s)	70
PkrI	GCNGC	2 cut(s)	7, 10
Psp6I	CCWGG	3 cut(s)	29, 231, 412
PspGI	CCWGG	3 cut(s)	29, 231, 412
PspN4I	GGNNCC	2 cut(s)	86, 504
PspPI	GGNCC	1 cut(s)	223
PsuI	RGATCY	2 cut(s)	191, 384
RseI	CAYNNNNRTG	1 cut(s)	267
SapI	GCTCTTC	1 cut(s)	495
SatI	GCNGC	2 cut(s)	6, 9
Sau3AI	GATC	3 cut(s)	191, 384, 478
Sau96I	GGNCC	1 cut(s)	223
ScrFI	CCNGG	3 cut(s)	31, 233, 414
SexAI	ACCWGGT	1 cut(s)	412
SfaNI	GCATC	1 cut(s)	414
SinI	GGWCC	1 cut(s)	223
SmiMI	CAYNNNNRTG	1 cut(s)	267
Sse9I	AATT	1 cut(s)	107
SseBI	AGGCCT	1 cut(s)	297
SsiI	CCGC	2 cut(s)	158, 280
SspMI	CTAG	1 cut(s)	35
StuI	AGGCCT	1 cut(s)	297
StyD4I	CCNGG	3 cut(s)	29, 231, 412
TaaI	ACNGT	1 cut(s)	217
TaiI	ACGT	1 cut(s)	271
TasI	AATT	1 cut(s)	107
TfiI	GAWTC	1 cut(s)	322
TseI	GCWGC	2 cut(s)	5, 8
TspDTI	ATGAA	1 cut(s)	279
Van91I	CCANNNNNTGG	1 cut(s)	232
VpaK11BI	GGWCC	1 cut(s)	223
XapI	RAATTY	1 cut(s)	107
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.