FvH4_5g02662

Ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000172
Physical Location & Seq
Reverse (-)
1600434 .. 1603172
2739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g02662.t1

Sequence Viewer

Length: 546 bp
ATGCGGCGTGATCTCGGTATGGCAGCGGCTAGGGTTCTCGGTGGCGGTGCGGCAATGGCGTCCATGATCGCTCGCTTGATCTCAAAGCTCTCTCTTCGTCAAGAGGACGAACCTGTGGATCTAGGAAACCTAAAAAGTCTGGGAAAGGGTTTCGTCGCTCAAAGGTTTTATCTGGTGGGTAAACTGAACTCTGCCCGTGCTGTGCAATTCGATTCCTTTCGAAGCGTCATCCGAGCGATGTGGAGACTATCTGTGCTAGTGGAGAGGGCCATGATCTTGTTGAATGATTACGACGGCTTCTCTGATATCATGGCAGTGCCACTCGACTTCTTTTGGATTTGGGTGGAGGTATGTGACTTATCGGCGACACTCACCACAAAGGCCACACTCTGGCTGGTAGGGGAGACCATCGGACCTGTCCTTAATGTCGACCAGGCGGGACTGAGGAAGGGATCTACTCACGTGCGCGTCACCCTTCCTCTAAACAGCTTGGTGAGGATGGATAGGAGACTGCGCGTGTCATCGGAGGATGTGATTATGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00230 ko00670 ko01100 ko01110 ko01130 ko01523 map00230 map00670 map01100 map01110 map01130 map01523
Pfam Domains
Protein Families
DDE_Tnp_1_7 DUF4283 RVT_1 RVT_3 zf-CCHC_4 zf-RVT

Protein Analysis

182

Amino Acids

20.11

Weight (kDa)

9.79

Isoelectric Point (pI)

36.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 390
AccI GTMKAC 1 cut(s) 429
AccII CGCG 2 cut(s) 468, 516
AciI CCGC 5 cut(s) 4, 26, 45, 50, 437
AclWI GGATC 2 cut(s) 126, 460
AcvI CACGTG 1 cut(s) 463
AcyI GRCGYC 1 cut(s) 59
AfiI CCNNNNNNNGG 1 cut(s) 390
AgsI TTSAA 1 cut(s) 283
AjnI CCWGG 1 cut(s) 432
AluBI AGCT 2 cut(s) 88, 489
AluI AGCT 2 cut(s) 88, 489
Alw26I GTCTC 3 cut(s) 238, 398, 502
AlwI GGATC 2 cut(s) 126, 460
AoxI GGCC 2 cut(s) 267, 381
ApeKI GCWGC 1 cut(s) 23
AspLEI GCGC 2 cut(s) 468, 516
AspS9I GGNCC 2 cut(s) 267, 413
AsuHPI GGTGA 3 cut(s) 364, 463, 505
AsuII TTCGAA 1 cut(s) 220
AvaII GGWCC 1 cut(s) 413
BbrPI CACGTG 1 cut(s) 463
BbvI GCAGC 1 cut(s) 35
BccI CCATC 2 cut(s) 416, 493
BceAI ACGGC 1 cut(s) 310
BciT130I CCWGG 1 cut(s) 434
BcoDI GTCTC 3 cut(s) 238, 398, 502
BfaI CTAG 3 cut(s) 30, 122, 257
BisI GCNGC 4 cut(s) 5, 24, 27, 51
BlsI GCNGC 4 cut(s) 6, 25, 28, 52
Bme1390I CCNGG 1 cut(s) 434
Bme18I GGWCC 1 cut(s) 413
BmgT120I GGNCC 2 cut(s) 267, 413
BmrFI CCNGG 1 cut(s) 434
Bpu14I TTCGAA 1 cut(s) 220
BsaAI YACGTR 1 cut(s) 463
BsaHI GRCGYC 1 cut(s) 59
BsaI GGTCTC 1 cut(s) 398
Bsc4I CCNNNNNNNGG 1 cut(s) 390
Bse3DI GCAATG 1 cut(s) 60
BseBI CCWGG 1 cut(s) 434
BseGI GGATG 3 cut(s) 228, 504, 535
BseLI CCNNNNNNNGG 1 cut(s) 390
BseMI GCAATG 1 cut(s) 60
BseMII CTCAG 1 cut(s) 434
BseXI GCAGC 1 cut(s) 35
Bsh1236I CGCG 2 cut(s) 468, 516
BshFI GGCC 2 cut(s) 269, 383
BslFI GGGAC 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 390
BsmAI GTCTC 3 cut(s) 238, 398, 502
BsmFI GGGAC 1 cut(s) 453
BsnI GGCC 2 cut(s) 269, 383
Bso31I GGTCTC 1 cut(s) 398
Bsp119I TTCGAA 1 cut(s) 220
Bsp143I GATC 6 cut(s) 10, 66, 78, 118, 273, 452
BspACI CCGC 5 cut(s) 4, 26, 45, 50, 437
BspANI GGCC 2 cut(s) 269, 383
BspCNI CTCAG 1 cut(s) 435
BspFNI CGCG 2 cut(s) 468, 516
BspPI GGATC 2 cut(s) 126, 460
BspT104I TTCGAA 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 398
BsrDI GCAATG 1 cut(s) 60
BssMI GATC 6 cut(s) 10, 66, 78, 118, 273, 452
BssNI GRCGYC 1 cut(s) 59
Bst2UI CCWGG 1 cut(s) 434
Bst6I CTCTTC 1 cut(s) 99
BstACI GRCGYC 1 cut(s) 59
BstBAI YACGTR 1 cut(s) 463
BstBI TTCGAA 1 cut(s) 220
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 443
BstF5I GGATG 3 cut(s) 228, 504, 535
BstFNI CGCG 2 cut(s) 468, 516
BstHHI GCGC 2 cut(s) 468, 516
BstKTI GATC 6 cut(s) 13, 69, 81, 121, 276, 455
BstMAI GTCTC 3 cut(s) 238, 398, 502
BstMBI GATC 6 cut(s) 10, 66, 78, 118, 273, 452
BstMWI GCNNNNNNNGC 1 cut(s) 56
BstNI CCWGG 1 cut(s) 434
BstSCI CCNGG 1 cut(s) 432
BstUI CGCG 2 cut(s) 468, 516
BstV1I GCAGC 1 cut(s) 35
BstX2I RGATCY 2 cut(s) 118, 452
BstYI RGATCY 2 cut(s) 118, 452
BsuRI GGCC 2 cut(s) 269, 383
BtgZI GCGATG 1 cut(s) 251
BtsCI GGATG 3 cut(s) 228, 504, 535
BtsI GCAGTG 1 cut(s) 321
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 73
CfoI GCGC 2 cut(s) 468, 516
Cfr13I GGNCC 2 cut(s) 267, 413
CseI GACGC 3 cut(s) 48, 214, 457
CviAII CATG 3 cut(s) 64, 271, 310
CviJI RGCY 7 cut(s) 29, 88, 269, 297, 383, 394, 489
CviKI_1 RGCY 7 cut(s) 29, 88, 269, 297, 383, 394, 489
DdeI CTNAG 1 cut(s) 443
DpnI GATC 6 cut(s) 12, 68, 80, 120, 275, 454
DpnII GATC 6 cut(s) 10, 66, 78, 118, 273, 452
Eam1104I CTCTTC 1 cut(s) 99
EarI CTCTTC 1 cut(s) 99
Eco31I GGTCTC 1 cut(s) 398
Eco32I GATATC 1 cut(s) 307
Eco47I GGWCC 1 cut(s) 413
Eco72I CACGTG 1 cut(s) 463
EcoRII CCWGG 1 cut(s) 432
EcoRV GATATC 1 cut(s) 307
FaeI CATG 3 cut(s) 67, 274, 313
FaiI YATR 6 cut(s) 20, 65, 272, 311, 352, 539
FaqI GGGAC 1 cut(s) 453
FatI CATG 3 cut(s) 63, 270, 309
FauI CCCGC 1 cut(s) 430
FblI GTMKAC 1 cut(s) 429
Fnu4HI GCNGC 4 cut(s) 5, 24, 27, 51
FokI GGATG 3 cut(s) 215, 511, 542
Fsp4HI GCNGC 4 cut(s) 5, 24, 27, 51
FspBI CTAG 3 cut(s) 30, 122, 257
GlaI GCGC 2 cut(s) 467, 515
GluI GCNGC 4 cut(s) 5, 24, 27, 51
HaeIII GGCC 2 cut(s) 269, 383
HgaI GACGC 3 cut(s) 48, 214, 457
HhaI GCGC 2 cut(s) 468, 516
Hin1I GRCGYC 1 cut(s) 59
Hin1II CATG 3 cut(s) 67, 274, 313
Hin6I GCGC 2 cut(s) 466, 514
HinP1I GCGC 2 cut(s) 466, 514
HincII GTYRAC 1 cut(s) 430
HindII GTYRAC 1 cut(s) 430
HinfI GANTC 1 cut(s) 212
HphI GGTGA 3 cut(s) 364, 463, 505
Hpy166II GTNNAC 2 cut(s) 182, 430
Hpy188I TCNGA 4 cut(s) 233, 304, 413, 526
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 2 cut(s) 182, 430
Hpy99I CGWCG 2 cut(s) 158, 296
HpyAV CCTTC 2 cut(s) 442, 485
HpyCH4IV ACGT 1 cut(s) 462
HpyCH4V TGCA 1 cut(s) 205
HpyF10VI GCNNNNNNNGC 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 443
HpySE526I ACGT 1 cut(s) 462
Hsp92I GRCGYC 1 cut(s) 59
Hsp92II CATG 3 cut(s) 67, 274, 313
HspAI GCGC 2 cut(s) 466, 514
Kzo9I GATC 6 cut(s) 10, 66, 78, 118, 273, 452
LpnPI CCDG 8 cut(s) 125, 126, 158, 376, 380, 419, 429, 446
Lsp1109I GCAGC 1 cut(s) 35
MaeI CTAG 3 cut(s) 30, 122, 257
MaeII ACGT 1 cut(s) 462
MaeIII GTNAC 2 cut(s) 353, 469
MalI GATC 6 cut(s) 12, 68, 80, 120, 275, 454
MboI GATC 6 cut(s) 10, 66, 78, 118, 273, 452
MboII GAAGA 1 cut(s) 86
MflI RGATCY 2 cut(s) 118, 452
MluCI AATT 1 cut(s) 206
MnlI CCTC 7 cut(s) 97, 258, 340, 438, 489, 489, 520
MseI TTAA 1 cut(s) 423
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 26
MspR9I CCNGG 1 cut(s) 434
MvaI CCWGG 1 cut(s) 434
MvnI CGCG 2 cut(s) 468, 516
MwoI GCNNNNNNNGC 1 cut(s) 56
NdeII GATC 6 cut(s) 10, 66, 78, 118, 273, 452
NlaIII CATG 3 cut(s) 67, 274, 313
NmuCI GTSAC 2 cut(s) 353, 469
NspV TTCGAA 1 cut(s) 220
PfeI GAWTC 1 cut(s) 212
PflMI CCANNNNNTGG 1 cut(s) 390
PkrI GCNGC 4 cut(s) 6, 25, 28, 52
PmaCI CACGTG 1 cut(s) 463
PmlI CACGTG 1 cut(s) 463
Ppu21I YACGTR 1 cut(s) 463
Psp6I CCWGG 1 cut(s) 432
PspCI CACGTG 1 cut(s) 463
PspGI CCWGG 1 cut(s) 432
PspPI GGNCC 2 cut(s) 267, 413
PsuI RGATCY 2 cut(s) 118, 452
RseI CAYNNNNRTG 1 cut(s) 314
SalI GTCGAC 1 cut(s) 428
SaqAI TTAA 1 cut(s) 423
SatI GCNGC 4 cut(s) 5, 24, 27, 51
Sau3AI GATC 6 cut(s) 10, 66, 78, 118, 273, 452
Sau96I GGNCC 2 cut(s) 267, 413
ScrFI CCNGG 1 cut(s) 434
SetI ASST 8 cut(s) 90, 115, 132, 167, 351, 418, 465, 491
SfuI TTCGAA 1 cut(s) 220
SinI GGWCC 1 cut(s) 413
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 1 cut(s) 206
SsiI CCGC 5 cut(s) 4, 26, 45, 50, 437
SspMI CTAG 3 cut(s) 30, 122, 257
StyD4I CCNGG 1 cut(s) 432
TaiI ACGT 1 cut(s) 465
TaqI TCGA 4 cut(s) 210, 220, 324, 429
TasI AATT 1 cut(s) 206
TauI GCSGC 3 cut(s) 7, 29, 53
TfiI GAWTC 1 cut(s) 212
Tru1I TTAA 1 cut(s) 423
Tru9I TTAA 1 cut(s) 423
TscAI CASTG 1 cut(s) 321
TseFI GTSAC 2 cut(s) 353, 469
TseI GCWGC 1 cut(s) 23
Tsp45I GTSAC 2 cut(s) 353, 469
TspRI CASTG 1 cut(s) 321
Van91I CCANNNNNTGG 1 cut(s) 390
VpaK11BI GGWCC 1 cut(s) 413
XcmI CCANNNNNNNNNTGG 1 cut(s) 391
XmiI GTMKAC 1 cut(s) 429
XspI CTAG 3 cut(s) 30, 122, 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.