Rmu_sc0010244.1_g000010

Ribonuclease H protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010244.1
Physical Location & Seq
Reverse (-)
28036 .. 28707
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010244.1_g000010.1.cds

Sequence Viewer

Length: 672 bp
atggctgctgctatcgcatccatgacggccaggctagcgaccaaactgtcgctcagagcaggcgaagaaccagtggacttggggaatctcagggttccggggaaggaatttttggctcgcaacttttacttggtgggcagattgaacacttgtagggcagtggtgatggagtccttcaggagtgctgtgcggtcgatgtggaggctgtcggggacagtggagctccaaccacggggtgaacggtttctgtttactttcactcatgaaagggatgttgctcgtgtgaagaagggtggtccatggggctttcagcgcgctatgatccttctgaacgactatgatggcttctcagagatctctgctgtgaagctggattttgtttggatctgggttacactgcagggcatccctccgggtattttgacggaacctaccgtccggttggttggagggacgattggagaggttttggaggtgtaccggttggcgctgcgcaggagtgaagctcgtgtccggcttgttctctccatcaacgatccggtaaggctggatcgcaaggttagggtttctcctattgacgtcctaacccttcattttaagtatgaaaggctcctaggtccgtgtcgctcatgctctctgctcaatcatggtgggcagcgatgccctaggtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.

Protein Analysis

223

Amino Acids

25.16

Weight (kDa)

10.35

Isoelectric Point (pI)

35.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000172)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G59650 AT3G59650
fragaria_vesca FvH4_1g19981 FvH4_1g22221 FvH4_2g13530 FvH4_2g13791 FvH4_2g14332 FvH4_2g14911 FvH4_2g16332 FvH4_3g10980 FvH4_3g11141 FvH4_3g14171 FvH4_3g26311 FvH4_3g28254 FvH4_3g29741 FvH4_4g05261 FvH4_4g12002 FvH4_4g13371 FvH4_4g15541 FvH4_4g18531 FvH4_5g02661 FvH4_5g02662 FvH4_5g16791 FvH4_5g29700 FvH4_5g35881 FvH4_5g37061 FvH4_6g01571 FvH4_6g12761 FvH4_6g14961 FvH4_6g20381 FvH4_6g22001 FvH4_6g23673 FvH4_6g23960 FvH4_6g28051 FvH4_6g31094 FvH4_6g36541 FvH4_7g00911 FvH4_7g06200 FvH4_7g06200 FvH4_7g09551
malus_domestica MD08G1230600.v1.1
prunus_persica Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1 Prupe.1G206900_v2.0.a1
pyrus_communis pycom08g20050 pycom15g37590
rosa_chinensis RchiOBHm_Chr1g0333831 RchiOBHm_Chr1g0344871 RchiOBHm_Chr3g0473241 RchiOBHm_Chr5g0018871 RchiOBHm_Chr6g0265791
rosa_laevigata RLG00000005720 RLG00000012718 RLG00000027174 RLG00000029225 RLG00000029527
rosa_multiflora Rmu_co8002714.1_g000001 Rmu_co8072270.1_g000001 Rmu_co8095594.1_g000001 Rmu_co8308871.1_g000001 Rmu_co8398699.1_g000001 Rmu_co8404287.1_g000001 Rmu_sc0000035.1_g000010 Rmu_sc0000133.1_g000007 Rmu_sc0000253.1_g000023 Rmu_sc0000308.1_g000010 Rmu_sc0000309.1_g000030 Rmu_sc0000515.1_g000015 Rmu_sc0000865.1_g000001 Rmu_sc0000889.1_g000005 Rmu_sc0001262.1_g000011 Rmu_sc0001518.1_g000013 Rmu_sc0001533.1_g000006 Rmu_sc0001547.1_g000007 Rmu_sc0001826.1_g000013 Rmu_sc0002060.1_g000017 Rmu_sc0002129.1_g000005 Rmu_sc0002449.1_g000016 Rmu_sc0002460.1_g000036 Rmu_sc0002475.1_g000014 Rmu_sc0002553.1_g000017 Rmu_sc0002759.1_g000033 Rmu_sc0002918.1_g000009 Rmu_sc0002955.1_g000020 Rmu_sc0003094.1_g000010 Rmu_sc0003669.1_g000009 Rmu_sc0004109.1_g000008 Rmu_sc0004350.1_g000007 Rmu_sc0004542.1_g000018 Rmu_sc0004967.1_g000005 Rmu_sc0005026.1_g000005 Rmu_sc0005369.1_g000013 Rmu_sc0005400.1_g000025 Rmu_sc0005420.1_g000006 Rmu_sc0005467.1_g000013 Rmu_sc0005497.1_g000003 Rmu_sc0005607.1_g000023 Rmu_sc0005949.1_g000008 Rmu_sc0005970.1_g000002 Rmu_sc0006452.1_g000001 Rmu_sc0006720.1_g000008 Rmu_sc0006867.1_g000004 Rmu_sc0007177.1_g000006 Rmu_sc0007199.1_g000011 Rmu_sc0007783.1_g000004 Rmu_sc0007885.1_g000006 Rmu_sc0008619.1_g000001 Rmu_sc0008709.1_g000004 Rmu_sc0008709.1_g000005 Rmu_sc0009185.1_g000029 Rmu_sc0010244.1_g000010 Rmu_sc0011610.1_g000005 Rmu_sc0011680.1_g000013 Rmu_sc0012075.1_g000003 Rmu_sc0012278.1_g000001 Rmu_sc0012628.1_g000001 Rmu_sc0018485.1_g000006 Rmu_sc0019960.1_g000001 Rmu_sc0020177.1_g000002 Rmu_sc0020656.1_g000001 Rmu_sc0021333.1_g000003 Rmu_sc0023170.1_g000002 Rmu_sc0023989.1_g000005 Rmu_sc0025259.1_g000001 Rmu_sc0025350.1_g000013 Rmu_sc0029678.1_g000002 Rmu_sc0035939.1_g000001 Rmu_sc0039260.1_g000001 Rmu_sc0039886.1_g000001 Rmu_ssc0000323.1_g000030 Rmu_ssc0000333.1_g000005 Rmu_ssc0000471.1_g000017 Rmu_ssc0000480.1_g000025
rosa_roxburghii Rroxscaffold_1G00006060 Rroxscaffold_1G00048570 Rroxscaffold_1G00057650 Rroxscaffold_1G00072720 Rroxscaffold_4G00281190 Rroxscaffold_4G00317160 Rroxscaffold_6G00411570
rosa_rugosa Rorug01G0004800 Rorug01G0112100 Rorug01G0206100 Rorug02G0324000 Rorug05G0305600 Rorug05G0326800 Rorug06G0018900 Rorug06G0167000 Rorug07G0031200 Rorug07G0071900
rosa_samantha Rh1AG134700 Rh1BG103000 Rh1CG007300 Rh1CG128100 Rh1DG140100 Rh2DG579500 Rh3DG199000 Rh4BG252500 Rh5AG374900 Rh5BG146800 Rh5BG151500 Rh5DG399700
rosa_wichuraiana Rw0G001820 Rw1G011230 Rw1G011240 Rw1G027290 Rw2G011670 Rw2G039270 Rw6G018440 Rw6G023120 Rw7G025180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 46
AatII GACGTC 1 cut(s) 582
Acc16I TGCGCA 1 cut(s) 494
AccII CGCG 1 cut(s) 315
AciI CCGC 1 cut(s) 190
AclWI GGATC 4 cut(s) 316, 392, 530, 558
AcoI YGGCCR 1 cut(s) 27
AcsI RAATTY 1 cut(s) 107
AcuI CTGAAG 1 cut(s) 160
AcyI GRCGYC 1 cut(s) 579
AdeI CACNNNGTG 1 cut(s) 236
AfaI GTAC 1 cut(s) 479
AfiI CCNNNNNNNGG 1 cut(s) 232
AgeI ACCGGT 1 cut(s) 480
AgsI TTSAA 1 cut(s) 145
AjnI CCWGG 1 cut(s) 29
AjuI GAANNNNNNNTTGG 2 cut(s) 95, 127
AloI GAACNNNNNNTCC 2 cut(s) 420, 452
AluBI AGCT 3 cut(s) 223, 370, 506
AluI AGCT 3 cut(s) 223, 370, 506
Alw21I GWGCWC 1 cut(s) 225
AlwI GGATC 4 cut(s) 316, 392, 530, 558
AoxI GGCC 1 cut(s) 27
ApeKI GCWGC 4 cut(s) 5, 8, 490, 655
ApoI RAATTY 1 cut(s) 107
AsiGI ACCGGT 1 cut(s) 480
Asp700I GAANNNNTTC 1 cut(s) 243
AspA2I CCTAGG 2 cut(s) 613, 665
AspLEI GCGC 4 cut(s) 315, 317, 490, 495
AspS9I GGNCC 2 cut(s) 296, 617
AsuC2I CCSGG 2 cut(s) 99, 414
AsuHPI GGTGA 2 cut(s) 175, 248
AsuNHI GCTAGC 1 cut(s) 34
AvaII GGWCC 2 cut(s) 296, 617
AvrII CCTAGG 2 cut(s) 613, 665
BanII GRGCYC 1 cut(s) 225
BauI CACGAG 2 cut(s) 279, 507
Bbv12I GWGCWC 1 cut(s) 225
BbvI GCAGC 2 cut(s) 477, 667
BccI CCATC 3 cut(s) 160, 335, 536
BceAI ACGGC 1 cut(s) 42
BciT130I CCWGG 1 cut(s) 31
BcnI CCSGG 2 cut(s) 99, 414
BfaI CTAG 3 cut(s) 35, 614, 666
BfmI CTRYAG 1 cut(s) 398
BfoI RGCGCY 1 cut(s) 491
BglII AGATCT 1 cut(s) 354
BisI GCNGC 4 cut(s) 6, 9, 491, 656
BlnI CCTAGG 2 cut(s) 613, 665
BlsI GCNGC 4 cut(s) 7, 10, 492, 657
Bme1390I CCNGG 3 cut(s) 31, 99, 414
Bme18I GGWCC 2 cut(s) 296, 617
BmgT120I GGNCC 2 cut(s) 296, 617
BmiI GGNNCC 3 cut(s) 96, 429, 611
BmrFI CCNGG 3 cut(s) 31, 99, 414
BmsI GCATC 3 cut(s) 26, 414, 650
BmtI GCTAGC 1 cut(s) 38
BplI GAGNNNNNCTC 2 cut(s) 490, 522
BpuMI CCSGG 2 cut(s) 99, 414
BsaHI GRCGYC 1 cut(s) 579
BsaJI CCNNGG 5 cut(s) 98, 230, 299, 613, 665
BsaWI WCCGGW 3 cut(s) 438, 480, 538
Bsc4I CCNNNNNNNGG 1 cut(s) 232
Bse118I RCCGGY 1 cut(s) 480
Bse1I ACTGG 1 cut(s) 71
BseBI CCWGG 1 cut(s) 31
BseDI CCNNGG 5 cut(s) 98, 230, 299, 613, 665
BseGI GGATG 3 cut(s) 17, 277, 405
BseLI CCNNNNNNNGG 1 cut(s) 232
BseMII CTCAG 3 cut(s) 67, 103, 363
BseNI ACTGG 1 cut(s) 71
BsePI GCGCGC 1 cut(s) 313
BseXI GCAGC 2 cut(s) 477, 667
Bsh1236I CGCG 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 194
BshFI GGCC 1 cut(s) 29
BshTI ACCGGT 1 cut(s) 480
BsiEI CGRYCG 1 cut(s) 194
BsiHKAI GWGCWC 1 cut(s) 225
BsiSI CCGG 6 cut(s) 98, 413, 439, 481, 514, 539
BslFI GGGAC 2 cut(s) 226, 466
BslI CCNNNNNNNGG 1 cut(s) 232
BsmFI GGGAC 2 cut(s) 226, 466
BsnI GGCC 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 225
Bsp143I GATC 5 cut(s) 321, 354, 384, 535, 550
Bsp19I CCATGG 1 cut(s) 299
BspACI CCGC 1 cut(s) 190
BspANI GGCC 1 cut(s) 29
BspCNI CTCAG 3 cut(s) 66, 102, 362
BspFNI CGCG 1 cut(s) 315
BspHI TCATGA 1 cut(s) 262
BspLI GGNNCC 3 cut(s) 96, 429, 611
BspMAI CTGCAG 1 cut(s) 402
BspOI GCTAGC 1 cut(s) 38
BspPI GGATC 4 cut(s) 316, 392, 530, 558
BsrFI RCCGGY 1 cut(s) 480
BsrI ACTGG 1 cut(s) 71
BssAI RCCGGY 1 cut(s) 480
BssECI CCNNGG 5 cut(s) 98, 230, 299, 613, 665
BssHII GCGCGC 1 cut(s) 313
BssMI GATC 5 cut(s) 321, 354, 384, 535, 550
BssNI GRCGYC 1 cut(s) 579
BssSI CACGAG 2 cut(s) 279, 507
BssT1I CCWWGG 3 cut(s) 299, 613, 665
Bst2BI CACGAG 2 cut(s) 279, 507
Bst2UI CCWGG 1 cut(s) 31
Bst4CI ACNGT 4 cut(s) 48, 217, 243, 436
BstACI GRCGYC 1 cut(s) 579
BstC8I GCNNGC 4 cut(s) 36, 61, 118, 315
BstDEI CTNAG 3 cut(s) 53, 89, 349
BstDSI CCRYGG 2 cut(s) 230, 299
BstF5I GGATG 3 cut(s) 17, 277, 405
BstFNI CGCG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 4 cut(s) 315, 317, 490, 495
BstKTI GATC 5 cut(s) 324, 357, 387, 538, 553
BstMBI GATC 5 cut(s) 321, 354, 384, 535, 550
BstMCI CGRYCG 1 cut(s) 194
BstMWI GCNNNNNNNGC 3 cut(s) 14, 35, 312
BstNI CCWGG 1 cut(s) 31
BstSCI CCNGG 3 cut(s) 29, 97, 412
BstSFI CTRYAG 1 cut(s) 398
BstUI CGCG 1 cut(s) 315
BstV1I GCAGC 2 cut(s) 477, 667
BstX2I RGATCY 2 cut(s) 354, 384
BstYI RGATCY 2 cut(s) 354, 384
BsuRI GGCC 1 cut(s) 29
BtgI CCRYGG 2 cut(s) 230, 299
BtsCI GGATG 3 cut(s) 17, 277, 405
BtsI GCAGTG 2 cut(s) 165, 395
BtsIMutI CAGTG 4 cut(s) 78, 165, 222, 395
Cac8I GCNNGC 4 cut(s) 36, 61, 118, 315
CciI TCATGA 1 cut(s) 262
CfoI GCGC 4 cut(s) 315, 317, 490, 495
Cfr10I RCCGGY 1 cut(s) 480
Cfr13I GGNCC 2 cut(s) 296, 617
Csp6I GTAC 1 cut(s) 478
CspAI ACCGGT 1 cut(s) 480
CspCI CAANNNNNGTGG 2 cut(s) 631, 666
CviAII CATG 5 cut(s) 22, 263, 300, 630, 647
CviQI GTAC 1 cut(s) 478
DdeI CTNAG 3 cut(s) 53, 89, 349
DpnI GATC 5 cut(s) 323, 356, 386, 537, 552
DpnII GATC 5 cut(s) 321, 354, 384, 535, 550
DraIII CACNNNGTG 1 cut(s) 236
DrdI GACNNNNNNGTC 1 cut(s) 46
DseDI GACNNNNNNGTC 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 27
Ecl136II GAGCTC 1 cut(s) 223
Eco130I CCWWGG 3 cut(s) 299, 613, 665
Eco24I GRGCYC 1 cut(s) 225
Eco47I GGWCC 2 cut(s) 296, 617
Eco53kI GAGCTC 1 cut(s) 223
Eco57I CTGAAG 1 cut(s) 160
EcoICRI GAGCTC 1 cut(s) 223
EcoRII CCWGG 1 cut(s) 29
EcoT14I CCWWGG 3 cut(s) 299, 613, 665
EcoT38I GRGCYC 1 cut(s) 225
ErhI CCWWGG 3 cut(s) 299, 613, 665
FaeI CATG 5 cut(s) 25, 266, 303, 633, 650
FaiI YATR 8 cut(s) 23, 264, 301, 320, 339, 603, 631, 648
FaqI GGGAC 2 cut(s) 226, 466
FatI CATG 5 cut(s) 21, 262, 299, 629, 646
Fnu4HI GCNGC 4 cut(s) 6, 9, 491, 656
FokI GGATG 3 cut(s) 4, 284, 392
FriOI GRGCYC 1 cut(s) 225
Fsp4HI GCNGC 4 cut(s) 6, 9, 491, 656
FspBI CTAG 3 cut(s) 35, 614, 666
FspI TGCGCA 1 cut(s) 494
GlaI GCGC 4 cut(s) 314, 316, 489, 494
GluI GCNGC 4 cut(s) 6, 9, 491, 656
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 1 cut(s) 29
HapII CCGG 6 cut(s) 98, 413, 439, 481, 514, 539
HhaI GCGC 4 cut(s) 315, 317, 490, 495
Hin1I GRCGYC 1 cut(s) 579
Hin1II CATG 5 cut(s) 25, 266, 303, 633, 650
Hin6I GCGC 4 cut(s) 313, 315, 488, 493
HinP1I GCGC 4 cut(s) 313, 315, 488, 493
HinfI GANTC 2 cut(s) 85, 170
HpaII CCGG 6 cut(s) 98, 413, 439, 481, 514, 539
HphI GGTGA 2 cut(s) 175, 248
Hpy166II GTNNAC 4 cut(s) 76, 239, 252, 478
Hpy188I TCNGA 3 cut(s) 56, 330, 352
Hpy188III TCNNGA 2 cut(s) 178, 263
Hpy8I GTNNAC 4 cut(s) 76, 239, 252, 478
HpyAV CCTTC 5 cut(s) 97, 184, 283, 335, 599
HpyCH4III ACNGT 4 cut(s) 48, 217, 243, 436
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 1 cut(s) 400
HpyF10VI GCNNNNNNNGC 3 cut(s) 14, 35, 312
HpyF3I CTNAG 3 cut(s) 53, 89, 349
HpySE526I ACGT 1 cut(s) 579
Hsp92I GRCGYC 1 cut(s) 579
Hsp92II CATG 5 cut(s) 25, 266, 303, 633, 650
HspAI GCGC 4 cut(s) 313, 315, 488, 493
Kzo9I GATC 5 cut(s) 321, 354, 384, 535, 550
LmnI GCTCC 3 cut(s) 220, 228, 615
Lsp1109I GCAGC 2 cut(s) 477, 667
LweI GCATC 3 cut(s) 26, 414, 650
MaeI CTAG 3 cut(s) 35, 614, 666
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 1 cut(s) 391
MalI GATC 5 cut(s) 323, 356, 386, 537, 552
MboI GATC 5 cut(s) 321, 354, 384, 535, 550
MboII GAAGA 2 cut(s) 77, 298
MflI RGATCY 2 cut(s) 354, 384
MhlI GDGCHC 1 cut(s) 225
MluCI AATT 1 cut(s) 107
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 2 cut(s) 250, 427
MnlI CCTC 5 cut(s) 195, 420, 443, 457, 466
MroXI GAANNNNTTC 1 cut(s) 243
MseI TTAA 1 cut(s) 597
MspI CCGG 6 cut(s) 98, 413, 439, 481, 514, 539
MspR9I CCNGG 3 cut(s) 31, 99, 414
MteI GCGCNGCGC 1 cut(s) 491
MvaI CCWGG 1 cut(s) 31
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 3 cut(s) 14, 35, 312
NciI CCSGG 2 cut(s) 99, 414
NcoI CCATGG 1 cut(s) 299
NdeII GATC 5 cut(s) 321, 354, 384, 535, 550
NheI GCTAGC 1 cut(s) 34
NlaIII CATG 5 cut(s) 25, 266, 303, 633, 650
NlaIV GGNNCC 3 cut(s) 96, 429, 611
NsbI TGCGCA 1 cut(s) 494
PagI TCATGA 1 cut(s) 262
PauI GCGCGC 1 cut(s) 313
PdmI GAANNNNTTC 1 cut(s) 243
PfeI GAWTC 1 cut(s) 85
PinAI ACCGGT 1 cut(s) 480
PkrI GCNGC 4 cut(s) 7, 10, 492, 657
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
Psp124BI GAGCTC 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 29
PspGI CCWGG 1 cut(s) 29
PspN4I GGNNCC 3 cut(s) 96, 429, 611
PspPI GGNCC 2 cut(s) 296, 617
PstI CTGCAG 1 cut(s) 402
PsuI RGATCY 2 cut(s) 354, 384
PteI GCGCGC 1 cut(s) 313
RsaI GTAC 1 cut(s) 479
RsaNI GTAC 1 cut(s) 478
SacI GAGCTC 1 cut(s) 225
SaqAI TTAA 1 cut(s) 597
SatI GCNGC 4 cut(s) 6, 9, 491, 656
Sau3AI GATC 5 cut(s) 321, 354, 384, 535, 550
Sau96I GGNCC 2 cut(s) 296, 617
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 3 cut(s) 31, 99, 414
SduI GDGCHC 1 cut(s) 225
SfaNI GCATC 3 cut(s) 26, 414, 650
SfcI CTRYAG 1 cut(s) 398
SinI GGWCC 2 cut(s) 296, 617
Sse9I AATT 1 cut(s) 107
SsiI CCGC 1 cut(s) 190
SspMI CTAG 3 cut(s) 35, 614, 666
SstI GAGCTC 1 cut(s) 225
StyD4I CCNGG 3 cut(s) 29, 97, 412
StyI CCWWGG 3 cut(s) 299, 613, 665
TaaI ACNGT 4 cut(s) 48, 217, 243, 436
TaiI ACGT 1 cut(s) 582
TaqI TCGA 1 cut(s) 194
TasI AATT 1 cut(s) 107
TfiI GAWTC 1 cut(s) 85
Tru1I TTAA 1 cut(s) 597
Tru9I TTAA 1 cut(s) 597
TscAI CASTG 4 cut(s) 78, 165, 222, 402
TseI GCWGC 4 cut(s) 5, 8, 490, 655
TspDTI ATGAA 3 cut(s) 279, 581, 618
TspGWI ACGGA 2 cut(s) 440, 609
TspRI CASTG 4 cut(s) 78, 165, 222, 402
VpaK11BI GGWCC 2 cut(s) 296, 617
XapI RAATTY 1 cut(s) 107
XmaJI CCTAGG 2 cut(s) 613, 665
XmnI GAANNNNTTC 1 cut(s) 243
XspI CTAG 3 cut(s) 35, 614, 666
ZraI GACGTC 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.