Ribonuclease H protein
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 46 |
| AatII | GACGTC | 1 cut(s) | 582 |
| Acc16I | TGCGCA | 1 cut(s) | 494 |
| AccII | CGCG | 1 cut(s) | 315 |
| AciI | CCGC | 1 cut(s) | 190 |
| AclWI | GGATC | 4 cut(s) | 316, 392, 530, 558 |
| AcoI | YGGCCR | 1 cut(s) | 27 |
| AcsI | RAATTY | 1 cut(s) | 107 |
| AcuI | CTGAAG | 1 cut(s) | 160 |
| AcyI | GRCGYC | 1 cut(s) | 579 |
| AdeI | CACNNNGTG | 1 cut(s) | 236 |
| AfaI | GTAC | 1 cut(s) | 479 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 232 |
| AgeI | ACCGGT | 1 cut(s) | 480 |
| AgsI | TTSAA | 1 cut(s) | 145 |
| AjnI | CCWGG | 1 cut(s) | 29 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 95, 127 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 420, 452 |
| AluBI | AGCT | 3 cut(s) | 223, 370, 506 |
| AluI | AGCT | 3 cut(s) | 223, 370, 506 |
| Alw21I | GWGCWC | 1 cut(s) | 225 |
| AlwI | GGATC | 4 cut(s) | 316, 392, 530, 558 |
| AoxI | GGCC | 1 cut(s) | 27 |
| ApeKI | GCWGC | 4 cut(s) | 5, 8, 490, 655 |
| ApoI | RAATTY | 1 cut(s) | 107 |
| AsiGI | ACCGGT | 1 cut(s) | 480 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 243 |
| AspA2I | CCTAGG | 2 cut(s) | 613, 665 |
| AspLEI | GCGC | 4 cut(s) | 315, 317, 490, 495 |
| AspS9I | GGNCC | 2 cut(s) | 296, 617 |
| AsuC2I | CCSGG | 2 cut(s) | 99, 414 |
| AsuHPI | GGTGA | 2 cut(s) | 175, 248 |
| AsuNHI | GCTAGC | 1 cut(s) | 34 |
| AvaII | GGWCC | 2 cut(s) | 296, 617 |
| AvrII | CCTAGG | 2 cut(s) | 613, 665 |
| BanII | GRGCYC | 1 cut(s) | 225 |
| BauI | CACGAG | 2 cut(s) | 279, 507 |
| Bbv12I | GWGCWC | 1 cut(s) | 225 |
| BbvI | GCAGC | 2 cut(s) | 477, 667 |
| BccI | CCATC | 3 cut(s) | 160, 335, 536 |
| BceAI | ACGGC | 1 cut(s) | 42 |
| BciT130I | CCWGG | 1 cut(s) | 31 |
| BcnI | CCSGG | 2 cut(s) | 99, 414 |
| BfaI | CTAG | 3 cut(s) | 35, 614, 666 |
| BfmI | CTRYAG | 1 cut(s) | 398 |
| BfoI | RGCGCY | 1 cut(s) | 491 |
| BglII | AGATCT | 1 cut(s) | 354 |
| BisI | GCNGC | 4 cut(s) | 6, 9, 491, 656 |
| BlnI | CCTAGG | 2 cut(s) | 613, 665 |
| BlsI | GCNGC | 4 cut(s) | 7, 10, 492, 657 |
| Bme1390I | CCNGG | 3 cut(s) | 31, 99, 414 |
| Bme18I | GGWCC | 2 cut(s) | 296, 617 |
| BmgT120I | GGNCC | 2 cut(s) | 296, 617 |
| BmiI | GGNNCC | 3 cut(s) | 96, 429, 611 |
| BmrFI | CCNGG | 3 cut(s) | 31, 99, 414 |
| BmsI | GCATC | 3 cut(s) | 26, 414, 650 |
| BmtI | GCTAGC | 1 cut(s) | 38 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 490, 522 |
| BpuMI | CCSGG | 2 cut(s) | 99, 414 |
| BsaHI | GRCGYC | 1 cut(s) | 579 |
| BsaJI | CCNNGG | 5 cut(s) | 98, 230, 299, 613, 665 |
| BsaWI | WCCGGW | 3 cut(s) | 438, 480, 538 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 232 |
| Bse118I | RCCGGY | 1 cut(s) | 480 |
| Bse1I | ACTGG | 1 cut(s) | 71 |
| BseBI | CCWGG | 1 cut(s) | 31 |
| BseDI | CCNNGG | 5 cut(s) | 98, 230, 299, 613, 665 |
| BseGI | GGATG | 3 cut(s) | 17, 277, 405 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 232 |
| BseMII | CTCAG | 3 cut(s) | 67, 103, 363 |
| BseNI | ACTGG | 1 cut(s) | 71 |
| BsePI | GCGCGC | 1 cut(s) | 313 |
| BseXI | GCAGC | 2 cut(s) | 477, 667 |
| Bsh1236I | CGCG | 1 cut(s) | 315 |
| Bsh1285I | CGRYCG | 1 cut(s) | 194 |
| BshFI | GGCC | 1 cut(s) | 29 |
| BshTI | ACCGGT | 1 cut(s) | 480 |
| BsiEI | CGRYCG | 1 cut(s) | 194 |
| BsiHKAI | GWGCWC | 1 cut(s) | 225 |
| BsiSI | CCGG | 6 cut(s) | 98, 413, 439, 481, 514, 539 |
| BslFI | GGGAC | 2 cut(s) | 226, 466 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 232 |
| BsmFI | GGGAC | 2 cut(s) | 226, 466 |
| BsnI | GGCC | 1 cut(s) | 29 |
| Bsp1286I | GDGCHC | 1 cut(s) | 225 |
| Bsp143I | GATC | 5 cut(s) | 321, 354, 384, 535, 550 |
| Bsp19I | CCATGG | 1 cut(s) | 299 |
| BspACI | CCGC | 1 cut(s) | 190 |
| BspANI | GGCC | 1 cut(s) | 29 |
| BspCNI | CTCAG | 3 cut(s) | 66, 102, 362 |
| BspFNI | CGCG | 1 cut(s) | 315 |
| BspHI | TCATGA | 1 cut(s) | 262 |
| BspLI | GGNNCC | 3 cut(s) | 96, 429, 611 |
| BspMAI | CTGCAG | 1 cut(s) | 402 |
| BspOI | GCTAGC | 1 cut(s) | 38 |
| BspPI | GGATC | 4 cut(s) | 316, 392, 530, 558 |
| BsrFI | RCCGGY | 1 cut(s) | 480 |
| BsrI | ACTGG | 1 cut(s) | 71 |
| BssAI | RCCGGY | 1 cut(s) | 480 |
| BssECI | CCNNGG | 5 cut(s) | 98, 230, 299, 613, 665 |
| BssHII | GCGCGC | 1 cut(s) | 313 |
| BssMI | GATC | 5 cut(s) | 321, 354, 384, 535, 550 |
| BssNI | GRCGYC | 1 cut(s) | 579 |
| BssSI | CACGAG | 2 cut(s) | 279, 507 |
| BssT1I | CCWWGG | 3 cut(s) | 299, 613, 665 |
| Bst2BI | CACGAG | 2 cut(s) | 279, 507 |
| Bst2UI | CCWGG | 1 cut(s) | 31 |
| Bst4CI | ACNGT | 4 cut(s) | 48, 217, 243, 436 |
| BstACI | GRCGYC | 1 cut(s) | 579 |
| BstC8I | GCNNGC | 4 cut(s) | 36, 61, 118, 315 |
| BstDEI | CTNAG | 3 cut(s) | 53, 89, 349 |
| BstDSI | CCRYGG | 2 cut(s) | 230, 299 |
| BstF5I | GGATG | 3 cut(s) | 17, 277, 405 |
| BstFNI | CGCG | 1 cut(s) | 315 |
| BstH2I | RGCGCY | 1 cut(s) | 491 |
| BstHHI | GCGC | 4 cut(s) | 315, 317, 490, 495 |
| BstKTI | GATC | 5 cut(s) | 324, 357, 387, 538, 553 |
| BstMBI | GATC | 5 cut(s) | 321, 354, 384, 535, 550 |
| BstMCI | CGRYCG | 1 cut(s) | 194 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 14, 35, 312 |
| BstNI | CCWGG | 1 cut(s) | 31 |
| BstSCI | CCNGG | 3 cut(s) | 29, 97, 412 |
| BstSFI | CTRYAG | 1 cut(s) | 398 |
| BstUI | CGCG | 1 cut(s) | 315 |
| BstV1I | GCAGC | 2 cut(s) | 477, 667 |
| BstX2I | RGATCY | 2 cut(s) | 354, 384 |
| BstYI | RGATCY | 2 cut(s) | 354, 384 |
| BsuRI | GGCC | 1 cut(s) | 29 |
| BtgI | CCRYGG | 2 cut(s) | 230, 299 |
| BtsCI | GGATG | 3 cut(s) | 17, 277, 405 |
| BtsI | GCAGTG | 2 cut(s) | 165, 395 |
| BtsIMutI | CAGTG | 4 cut(s) | 78, 165, 222, 395 |
| Cac8I | GCNNGC | 4 cut(s) | 36, 61, 118, 315 |
| CciI | TCATGA | 1 cut(s) | 262 |
| CfoI | GCGC | 4 cut(s) | 315, 317, 490, 495 |
| Cfr10I | RCCGGY | 1 cut(s) | 480 |
| Cfr13I | GGNCC | 2 cut(s) | 296, 617 |
| Csp6I | GTAC | 1 cut(s) | 478 |
| CspAI | ACCGGT | 1 cut(s) | 480 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 631, 666 |
| CviAII | CATG | 5 cut(s) | 22, 263, 300, 630, 647 |
| CviQI | GTAC | 1 cut(s) | 478 |
| DdeI | CTNAG | 3 cut(s) | 53, 89, 349 |
| DpnI | GATC | 5 cut(s) | 323, 356, 386, 537, 552 |
| DpnII | GATC | 5 cut(s) | 321, 354, 384, 535, 550 |
| DraIII | CACNNNGTG | 1 cut(s) | 236 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 46 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 46 |
| EaeI | YGGCCR | 1 cut(s) | 27 |
| Ecl136II | GAGCTC | 1 cut(s) | 223 |
| Eco130I | CCWWGG | 3 cut(s) | 299, 613, 665 |
| Eco24I | GRGCYC | 1 cut(s) | 225 |
| Eco47I | GGWCC | 2 cut(s) | 296, 617 |
| Eco53kI | GAGCTC | 1 cut(s) | 223 |
| Eco57I | CTGAAG | 1 cut(s) | 160 |
| EcoICRI | GAGCTC | 1 cut(s) | 223 |
| EcoRII | CCWGG | 1 cut(s) | 29 |
| EcoT14I | CCWWGG | 3 cut(s) | 299, 613, 665 |
| EcoT38I | GRGCYC | 1 cut(s) | 225 |
| ErhI | CCWWGG | 3 cut(s) | 299, 613, 665 |
| FaeI | CATG | 5 cut(s) | 25, 266, 303, 633, 650 |
| FaiI | YATR | 8 cut(s) | 23, 264, 301, 320, 339, 603, 631, 648 |
| FaqI | GGGAC | 2 cut(s) | 226, 466 |
| FatI | CATG | 5 cut(s) | 21, 262, 299, 629, 646 |
| Fnu4HI | GCNGC | 4 cut(s) | 6, 9, 491, 656 |
| FokI | GGATG | 3 cut(s) | 4, 284, 392 |
| FriOI | GRGCYC | 1 cut(s) | 225 |
| Fsp4HI | GCNGC | 4 cut(s) | 6, 9, 491, 656 |
| FspBI | CTAG | 3 cut(s) | 35, 614, 666 |
| FspI | TGCGCA | 1 cut(s) | 494 |
| GlaI | GCGC | 4 cut(s) | 314, 316, 489, 494 |
| GluI | GCNGC | 4 cut(s) | 6, 9, 491, 656 |
| HaeII | RGCGCY | 1 cut(s) | 491 |
| HaeIII | GGCC | 1 cut(s) | 29 |
| HapII | CCGG | 6 cut(s) | 98, 413, 439, 481, 514, 539 |
| HhaI | GCGC | 4 cut(s) | 315, 317, 490, 495 |
| Hin1I | GRCGYC | 1 cut(s) | 579 |
| Hin1II | CATG | 5 cut(s) | 25, 266, 303, 633, 650 |
| Hin6I | GCGC | 4 cut(s) | 313, 315, 488, 493 |
| HinP1I | GCGC | 4 cut(s) | 313, 315, 488, 493 |
| HinfI | GANTC | 2 cut(s) | 85, 170 |
| HpaII | CCGG | 6 cut(s) | 98, 413, 439, 481, 514, 539 |
| HphI | GGTGA | 2 cut(s) | 175, 248 |
| Hpy166II | GTNNAC | 4 cut(s) | 76, 239, 252, 478 |
| Hpy188I | TCNGA | 3 cut(s) | 56, 330, 352 |
| Hpy188III | TCNNGA | 2 cut(s) | 178, 263 |
| Hpy8I | GTNNAC | 4 cut(s) | 76, 239, 252, 478 |
| HpyAV | CCTTC | 5 cut(s) | 97, 184, 283, 335, 599 |
| HpyCH4III | ACNGT | 4 cut(s) | 48, 217, 243, 436 |
| HpyCH4IV | ACGT | 1 cut(s) | 579 |
| HpyCH4V | TGCA | 1 cut(s) | 400 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 14, 35, 312 |
| HpyF3I | CTNAG | 3 cut(s) | 53, 89, 349 |
| HpySE526I | ACGT | 1 cut(s) | 579 |
| Hsp92I | GRCGYC | 1 cut(s) | 579 |
| Hsp92II | CATG | 5 cut(s) | 25, 266, 303, 633, 650 |
| HspAI | GCGC | 4 cut(s) | 313, 315, 488, 493 |
| Kzo9I | GATC | 5 cut(s) | 321, 354, 384, 535, 550 |
| LmnI | GCTCC | 3 cut(s) | 220, 228, 615 |
| Lsp1109I | GCAGC | 2 cut(s) | 477, 667 |
| LweI | GCATC | 3 cut(s) | 26, 414, 650 |
| MaeI | CTAG | 3 cut(s) | 35, 614, 666 |
| MaeII | ACGT | 1 cut(s) | 579 |
| MaeIII | GTNAC | 1 cut(s) | 391 |
| MalI | GATC | 5 cut(s) | 323, 356, 386, 537, 552 |
| MboI | GATC | 5 cut(s) | 321, 354, 384, 535, 550 |
| MboII | GAAGA | 2 cut(s) | 77, 298 |
| MflI | RGATCY | 2 cut(s) | 354, 384 |
| MhlI | GDGCHC | 1 cut(s) | 225 |
| MluCI | AATT | 1 cut(s) | 107 |
| MlyI | GAGTC | 1 cut(s) | 179 |
| MmeI | TCCRAC | 2 cut(s) | 250, 427 |
| MnlI | CCTC | 5 cut(s) | 195, 420, 443, 457, 466 |
| MroXI | GAANNNNTTC | 1 cut(s) | 243 |
| MseI | TTAA | 1 cut(s) | 597 |
| MspI | CCGG | 6 cut(s) | 98, 413, 439, 481, 514, 539 |
| MspR9I | CCNGG | 3 cut(s) | 31, 99, 414 |
| MteI | GCGCNGCGC | 1 cut(s) | 491 |
| MvaI | CCWGG | 1 cut(s) | 31 |
| MvnI | CGCG | 1 cut(s) | 315 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 14, 35, 312 |
| NciI | CCSGG | 2 cut(s) | 99, 414 |
| NcoI | CCATGG | 1 cut(s) | 299 |
| NdeII | GATC | 5 cut(s) | 321, 354, 384, 535, 550 |
| NheI | GCTAGC | 1 cut(s) | 34 |
| NlaIII | CATG | 5 cut(s) | 25, 266, 303, 633, 650 |
| NlaIV | GGNNCC | 3 cut(s) | 96, 429, 611 |
| NsbI | TGCGCA | 1 cut(s) | 494 |
| PagI | TCATGA | 1 cut(s) | 262 |
| PauI | GCGCGC | 1 cut(s) | 313 |
| PdmI | GAANNNNTTC | 1 cut(s) | 243 |
| PfeI | GAWTC | 1 cut(s) | 85 |
| PinAI | ACCGGT | 1 cut(s) | 480 |
| PkrI | GCNGC | 4 cut(s) | 7, 10, 492, 657 |
| PleI | GAGTC | 1 cut(s) | 178 |
| PpsI | GAGTC | 1 cut(s) | 178 |
| Psp124BI | GAGCTC | 1 cut(s) | 225 |
| Psp6I | CCWGG | 1 cut(s) | 29 |
| PspGI | CCWGG | 1 cut(s) | 29 |
| PspN4I | GGNNCC | 3 cut(s) | 96, 429, 611 |
| PspPI | GGNCC | 2 cut(s) | 296, 617 |
| PstI | CTGCAG | 1 cut(s) | 402 |
| PsuI | RGATCY | 2 cut(s) | 354, 384 |
| PteI | GCGCGC | 1 cut(s) | 313 |
| RsaI | GTAC | 1 cut(s) | 479 |
| RsaNI | GTAC | 1 cut(s) | 478 |
| SacI | GAGCTC | 1 cut(s) | 225 |
| SaqAI | TTAA | 1 cut(s) | 597 |
| SatI | GCNGC | 4 cut(s) | 6, 9, 491, 656 |
| Sau3AI | GATC | 5 cut(s) | 321, 354, 384, 535, 550 |
| Sau96I | GGNCC | 2 cut(s) | 296, 617 |
| SchI | GAGTC | 1 cut(s) | 179 |
| ScrFI | CCNGG | 3 cut(s) | 31, 99, 414 |
| SduI | GDGCHC | 1 cut(s) | 225 |
| SfaNI | GCATC | 3 cut(s) | 26, 414, 650 |
| SfcI | CTRYAG | 1 cut(s) | 398 |
| SinI | GGWCC | 2 cut(s) | 296, 617 |
| Sse9I | AATT | 1 cut(s) | 107 |
| SsiI | CCGC | 1 cut(s) | 190 |
| SspMI | CTAG | 3 cut(s) | 35, 614, 666 |
| SstI | GAGCTC | 1 cut(s) | 225 |
| StyD4I | CCNGG | 3 cut(s) | 29, 97, 412 |
| StyI | CCWWGG | 3 cut(s) | 299, 613, 665 |
| TaaI | ACNGT | 4 cut(s) | 48, 217, 243, 436 |
| TaiI | ACGT | 1 cut(s) | 582 |
| TaqI | TCGA | 1 cut(s) | 194 |
| TasI | AATT | 1 cut(s) | 107 |
| TfiI | GAWTC | 1 cut(s) | 85 |
| Tru1I | TTAA | 1 cut(s) | 597 |
| Tru9I | TTAA | 1 cut(s) | 597 |
| TscAI | CASTG | 4 cut(s) | 78, 165, 222, 402 |
| TseI | GCWGC | 4 cut(s) | 5, 8, 490, 655 |
| TspDTI | ATGAA | 3 cut(s) | 279, 581, 618 |
| TspGWI | ACGGA | 2 cut(s) | 440, 609 |
| TspRI | CASTG | 4 cut(s) | 78, 165, 222, 402 |
| VpaK11BI | GGWCC | 2 cut(s) | 296, 617 |
| XapI | RAATTY | 1 cut(s) | 107 |
| XmaJI | CCTAGG | 2 cut(s) | 613, 665 |
| XmnI | GAANNNNTTC | 1 cut(s) | 243 |
| XspI | CTAG | 3 cut(s) | 35, 614, 666 |
| ZraI | GACGTC | 1 cut(s) | 580 |